mRNA_E-fasciculatus_F_contig13590.2673.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13590.2673.1
Unique NamemRNA_E-fasciculatus_F_contig13590.2673.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13590.2673.1 vs. uniprot
Match: D7G1K8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1K8_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 9.860e-55
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 2 
Query:    2 ASDCECVNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGVMNCNYFALGQNCRACSDLCTDQGDGTWLDQDGFPCKPCSAV 247
            ASDCECVNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGVMNCNYFALGQNCRACSDLC DQGDGTWLDQDGFPCKPCSA+
Sbjct:  233 ASDCECVNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGVMNCNYFALGQNCRACSDLCDDQGDGTWLDQDGFPCKPCSAI 314
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13590.2673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1K8_ECTSI9.860e-5597.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13590contigE-fasciculatus_F_contig13590:120..987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13590.2673.1prot_E-fasciculatus_F_contig13590.2673.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13590 163..880 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927855.8742664-UTR-E-fasciculatus_F_contig13590:119..1621622927855.8742664-UTR-E-fasciculatus_F_contig13590:119..162Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13590 120..162 +
1695995725.0715835-UTR-E-fasciculatus_F_contig13590:119..1621695995725.0715835-UTR-E-fasciculatus_F_contig13590:119..162Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13590 120..162 +
1622927855.9196393-UTR-E-fasciculatus_F_contig13590:880..9871622927855.9196393-UTR-E-fasciculatus_F_contig13590:880..987Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13590 881..987 +
1695995725.1051428-UTR-E-fasciculatus_F_contig13590:880..9871695995725.1051428-UTR-E-fasciculatus_F_contig13590:880..987Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13590 881..987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927855.8875668-CDS-E-fasciculatus_F_contig13590:162..2381622927855.8875668-CDS-E-fasciculatus_F_contig13590:162..238Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13590 163..238 +
1695995725.0797455-CDS-E-fasciculatus_F_contig13590:162..2381695995725.0797455-CDS-E-fasciculatus_F_contig13590:162..238Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13590 163..238 +
1622927855.904729-CDS-E-fasciculatus_F_contig13590:749..8801622927855.904729-CDS-E-fasciculatus_F_contig13590:749..880Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13590 750..880 +
1695995725.0890672-CDS-E-fasciculatus_F_contig13590:749..8801695995725.0890672-CDS-E-fasciculatus_F_contig13590:749..880Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13590 750..880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13590.2673.1

>prot_E-fasciculatus_F_contig13590.2673.1 ID=prot_E-fasciculatus_F_contig13590.2673.1|Name=mRNA_E-fasciculatus_F_contig13590.2673.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=69bp
MAVLTRRSKNMVCDPTCSDQSDLVWGVMNCNYFALGQNCRACSDLCTDQG
DGTWLDQDGFPCKPCSAV*
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mRNA from alignment at E-fasciculatus_F_contig13590:120..987+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13590.2673.1 ID=mRNA_E-fasciculatus_F_contig13590.2673.1|Name=mRNA_E-fasciculatus_F_contig13590.2673.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=868bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13590:120..987+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCCTCGGACTGCGAGTGCGTCAACAGCCTGTCGGAGGAGGAGATGGCCG
TGCTCACGCGACGGTCGAAGAACATGGTGTGCGACCCGACCTGCTCGGAC
CAGTCCGACCTCGTCTGGGGTGAGTTACGGTAGCGAATTTGGTTTTCGTT
TTGTTAGCCCCATTTTATTTTTTTTTGTTTTCGAATTCGGGTCGGAACCT
TTGTATCGTATTTTTTGCTAGGAACTACTTCGGAACACTCAGAAAAAAAT
AAAAATTCAAAGAGTCAAAGAGTTGCACAATACAAATGTCTCATCTTTGG
TGGTTTTCTGGGATTTTTTATACTTTGCGCCTCAAAAGCTGAACCACAAA
GAAGGAAATCCCGGACGGAGAAATTCAGAGCCAACCGTAAGAACTTCTCC
TGAAAACAAAAAGGAACGCGTGTGTACGAAGATTTTTAGTCTGCGTGGCC
CCGGCACGAAGACACCGTGTGTGTGTGTGTGTGCGGCTCGGTTGTCCTTG
CGTGCGATGCCGTAGGCTATTAGTTTCGGTGACGTCTTCCTTCCAGCAAC
ACGCCGACAACCACCACTGCCTTCTAAAAAAACACTCACCCTAACGAGCG
CCACTGCCCTTTGCCGTGCCCAACTCTCAGGCGTGATGAACTGCAACTAC
TTCGCCCTGGGCCAGAACTGCCGCGCGTGCAGCGACCTCTGCACCGACCA
GGGGGACGGCACCTGGCTGGACCAGGACGGCTTCCCGTGCAAGCCGTGCT
CCGCCGTCTAAAGCGGCCAACATGACTGAGAAAAAAAAACGCGAGCCAAA
AAACATATGTCAGATCGTCGCCCCTTGATACGGGGGGGGGCGGGGCGTTT
GTTTTGTGTACTCTCTCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13590:120..987+

>mRNA_E-fasciculatus_F_contig13590.2673.1 ID=mRNA_E-fasciculatus_F_contig13590.2673.1|Name=mRNA_E-fasciculatus_F_contig13590.2673.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13590:120..987+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCGTGCTCACGCGACGGTCGAAGAACATGGTGTGCGACCCGACCTG
CTCGGACCAGTCCGACCTCGTCTGGGATGGCCGTGCTCACGCGACGGTCG
AAGAACATGGTGTGCGACCCGACCTGCTCGGACCAGTCCGACCTCGTCTG
GGGCGTGATGAACTGCAACTACTTCGCCCTGGGCCAGAACTGCCGCGCGT
GCAGCGACCTCTGCACCGACCAGGGGGACGGCACCTGGCTGGACCAGGAC
GGCTTCCCGTGCAAGCCGTGCTCCGCCGTCTAAGCGTGATGAACTGCAAC
TACTTCGCCCTGGGCCAGAACTGCCGCGCGTGCAGCGACCTCTGCACCGA
CCAGGGGGACGGCACCTGGCTGGACCAGGACGGCTTCCCGTGCAAGCCGT
GCTCCGCCGTCTAA
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