mRNA_E-fasciculatus_F_contig13571.2659.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13571.2659.1
Unique NamemRNA_E-fasciculatus_F_contig13571.2659.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13571.2659.1 vs. uniprot
Match: A0A6H5JHL4_9PHAE (GLOBIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHL4_9PHAE)

HSP 1 Score: 489 bits (1260), Expect = 9.000e-156
Identity = 278/380 (73.16%), Postives = 307/380 (80.79%), Query Frame = 2 
Query:    2 ATAVANVASVSPPSSAALRPYELLDQQMKKSAEPTLLQLPASSTARMEQAAAHRAGGRGVGEAGGQRDLPSGTLSHGDGEP--GGSDPRHPRRDNGSPLSSVPRTPATRVGVRELHGHQAADGRGSREESALLLTPGSDKTGRAHRAFPSPAKNRNGSRRSARRGDSGSRSFCRRRHRPNGEKKKSPGGGVAPGRVSMPQSSKEAGSVDQAGVFSDGGDXXXXXXXXXXXXXXXGASRQPPVRKLSHEAATMFGFLEEEEEDGGGEVEAKTEQRAHSWDRRPRSMNAVDISAVDSIGANAMAFFERKRLQRKQRGGERAGDGSVVAGSPMKVEKGEEKKEDEAWLDSLPRHWQPQLQSLPRQEEPIEGKPGGGYNALAAA 1135
            A+AVAN+ SVS PSSAALRPYE++ Q+ +K++EPT LQLPA+STARME+AAAH  GGRGVGEAGG+RDLPS  LSHGDGEP  GGSDPR  RRDNGS LSSVPRTPATRVGVRELHGHQ ADG G REE ALL TP  DKTGRAHRA+PSPAK  NGSRR+ARRGDSGSRSF RRRHRPNGEKKKSP   VAPGR S PQ SK AG  DQAGVFSD G+               G SRQPPVRKLSHEAATMFGFLEE       E EAKTEQR +SWDRRP+SMNA DI+AVDSIGANAMAFFE+KRLQ+KQ  GER+G+GS VAGSPM+V++ EEKKEDEA  +SL R+WQ  LQ+LPRQEE +E KPG  Y+ALAAA
Sbjct:  727 ASAVANIVSVSAPSSAALRPYEVMAQEAQKASEPTPLQLPATSTARMEKAAAHGVGGRGVGEAGGRRDLPSEALSHGDGEPEPGGSDPRQARRDNGSHLSSVPRTPATRVGVRELHGHQTADGCGPREEPALLRTPACDKTGRAHRAYPSPAKCHNGSRRAARRGDSGSRSFSRRRHRPNGEKKKSPA--VAPGRGSTPQGSKGAGVADQAGVFSDDGNDGKAQSSKRTGGGGKGPSRQPPVRKLSHEAATMFGFLEEXXXXXXXEAEAKTEQRMNSWDRRPKSMNAADIAAVDSIGANAMAFFEKKRLQKKQSRGERSGNGSAVAGSPMEVKEAEEKKEDEAESNSLLRNWQ--LQALPRQEEAVEAKPGEEYDALAAA 1102
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BLAST of mRNA_E-fasciculatus_F_contig13571.2659.1 vs. uniprot
Match: D7FWG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWG0_ECTSI)

HSP 1 Score: 457 bits (1175), Expect = 4.070e-144
Identity = 266/369 (72.09%), Postives = 287/369 (77.78%), Query Frame = 2 
Query:   29 VSPPSSAALRPYELLDQQMKKSAEPTLLQLPASSTARMEQAAAHRAGGRGVGEAGGQRDLPSGTLSHGDGEPGGSDPRHPRRDNGSPLSSVPRTPATRVGVRELHGHQAADGRGSREESALLLTPGSDKTGRAHRAFPSPAKNRNGSRRSARRGDSGSRSFCRRRHRPNGEKKKSPGGGVAPGRVSMPQSSKEAGSVDQAGVFSDGGDXXXXXXXXXXXXXXXGASRQPPVRKLSHEAATMFGFLEEEEEDGGGEVEAKTEQRAHSWDRRPRSMNAVDISAVDSIGANAMAFFERKRLQRKQRGGERAGDGSVVAGSPMKVEKGEEKKEDEAWLDSLPRHWQPQLQSLPRQEEPIEGKPGGGYNALAAA 1135
            VSPPSSAALRPYEL+ ++ KK+AEPT LQLPASSTARME+AAAH  GGRGV EAGGQRDLPS  LSHGDGEP   +P                       VRELHGHQAA+G G REE ALL TPG DKTGRAHRAFPSPAK+RNGSRR+ARRGDSGSRSF RRRHRPNGEKKKSP G VA GRVS P  SK  G  DQAGVFSD GD               G SRQPPVRKLSHEAATMFGFL+EEE DGGGE EAKTEQR +SWDRRP+SMNA DISAVDSIGANAMAFFE+KRLQ+KQRG ER+G+GSVVAGSPMKV++ EEKKEDEA   SL R+WQPQLQ+LPRQEE  E KPG  Y+ALAAA
Sbjct:  695 VSPPSSAALRPYELMAERAKKAAEPTPLQLPASSTARMEKAAAHGVGGRGVSEAGGQRDLPSEALSHGDGEP---EP-----------------------VRELHGHQAAEGGGLREEPALLRTPGGDKTGRAHRAFPSPAKSRNGSRRAARRGDSGSRSFSRRRHRPNGEKKKSPAG-VALGRVSTPPGSKGVGVADQAGVFSDDGDDGKARSSKRTGGGGKGPSRQPPVRKLSHEAATMFGFLDEEE-DGGGEAEAKTEQRLNSWDRRPKSMNAADISAVDSIGANAMAFFEKKRLQKKQRG-ERSGNGSVVAGSPMKVKEAEEKKEDEAESSSLLRNWQPQLQALPRQEEAAEAKPGAEYDALAAA 1034
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13571.2659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHL4_9PHAE9.000e-15673.16GLOBIN domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FWG0_ECTSI4.070e-14472.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13571contigE-fasciculatus_F_contig13571:1999..3606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1136
Cds size642
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13571.2659.1prot_E-fasciculatus_F_contig13571.2659.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13571 1999..3113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927854.4379604-CDS-E-fasciculatus_F_contig13571:1998..25021622927854.4379604-CDS-E-fasciculatus_F_contig13571:1998..2502Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13571 1999..2502 +
1695995724.4411118-CDS-E-fasciculatus_F_contig13571:1998..25021695995724.4411118-CDS-E-fasciculatus_F_contig13571:1998..2502Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13571 1999..2502 +
1622927854.4603615-CDS-E-fasciculatus_F_contig13571:2975..31131622927854.4603615-CDS-E-fasciculatus_F_contig13571:2975..3113Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13571 2976..3113 +
1695995724.454945-CDS-E-fasciculatus_F_contig13571:2975..31131695995724.454945-CDS-E-fasciculatus_F_contig13571:2975..3113Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13571 2976..3113 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927854.4706743-UTR-E-fasciculatus_F_contig13571:3113..36061622927854.4706743-UTR-E-fasciculatus_F_contig13571:3113..3606Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13571 3114..3606 +
1695995724.465523-UTR-E-fasciculatus_F_contig13571:3113..36061695995724.465523-UTR-E-fasciculatus_F_contig13571:3113..3606Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13571 3114..3606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13571.2659.1

>prot_E-fasciculatus_F_contig13571.2659.1 ID=prot_E-fasciculatus_F_contig13571.2659.1|Name=mRNA_E-fasciculatus_F_contig13571.2659.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=214bp
RNRRRKRRFRFATLICCLAAVRAFGPADEKVGGTDAASAAGEFNGSHGAS
RCPSCRRQGSRRSGWPARLAQRNVVPRRWGARWVRPETPAQGQRVAPVER
AENTCNSGWSEGATRPPGGGRERFARGIRAPAYPWVRQDGKGAPGFSLSC
QESKRQQAVGETRGFGVEIVLPPTPPTKRRKEKVPRRRRCTRSGFHASKL
EGSGLGGPSRRFQ*
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mRNA from alignment at E-fasciculatus_F_contig13571:1999..3606+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13571.2659.1 ID=mRNA_E-fasciculatus_F_contig13571.2659.1|Name=mRNA_E-fasciculatus_F_contig13571.2659.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1608bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13571:1999..3606+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCAACCGCCGTCGCAAACGTCGCTTCCGTTTCGCCACCCTCATCTGCTG
CCTTGCGGCCGTACGAGCTTTTGGACCAGCAGATGAAAAAGTCGGCGGAA
CCGACGCTGCTTCAGCTGCCGGCGAGTTCAACGGCTCGCATGGAGCAAGC
CGCTGCCCATCGTGCCGGCGGCAGGGGAGTCGGCGAAGCGGGTGGCCAGC
GAGACTTGCCCAGCGGAACGTTGTCCCACGGCGATGGGGAGCCAGGTGGG
TCCGACCCGAGACACCCGCGCAGGGACAACGGGTCGCCCCTGTCGAGCGT
GCCGAGAACACCTGCAACTCGGGTTGGAGTGAGGGAGCTACACGGCCACC
AGGCGGCGGACGGGAGAGGTTCGCGCGAGGAATCCGCGCTCCTGCTTACC
CCTGGGTCCGACAAGACGGGAAGGGCGCACCGGGCTTTTCCCTCTCCTGC
CAAGAATCGAAACGGCAGCAGGCGGTCGGCGAGACGAGGGGATTCGGGGT
CGAGGTGAGATGTTCGCCGTGGTGTGTTTGTGTGTGTGTTTTTTGTTGGC
TCCACGGACCGTCCAAAAGCGCCTTCCTCCGTTTTGGTGCATACATCGTC
GCCATGTGGAGAGTTCCTTGCCTCTGCGTGTTTGTGTGCAAGAAGAAAAA
GCACGTACCAGGCGAACCGAGGCCAGTCGTTCGAGGTATGGCTCCACACT
TAGACGAGTTGCTATACAGTATGGTTGTCCGTGTTTTCGCGTCGAGTCAT
GTACACACCATACCACGGCGCGGAATAAATTAGTCCTATTGTAAGTAGAC
GATTAGATTACACACGTGGGAGGGTACAGCGCAATTACATCGTTCTCCAT
CCGTTGCGTGACACGCTGTTTGGCTCTGTGTTCGGTGCTCTTGTGCTACA
TTCGGCCAACTTGTTACTCCCCGTTAACATGCCCTCCCCCCCACCCTACT
CTTCCTTGGCGTGACCCGCCTCCCCAGATCGTTCTGCCGCCGACGCCACC
GACCAAACGGCGAAAAGAAAAAGTCCCCCGGCGGCGGCGTTGCACCCGGT
CGGGTTTCCATGCCTCAAAGCTCGAAGGAAGCGGGCTCGGTGGACCAAGC
CGGCGTTTTCAGTGACGGCGGCGATGGGGGCAAAGCTCGGAACAGTAGAC
GAACTGGGAGGGGCGGGAAGGGTGCTTCGAGGCAACCGCCGGTGCGAAAG
CTGTCCCACGAAGCCGCGACGATGTTCGGGTTCTTGGAGGAGGAGGAGGA
GGACGGCGGTGGGGAGGTGGAGGCTAAGACCGAGCAGAGGGCGCACAGCT
GGGACAGGCGGCCGCGGAGCATGAACGCCGTCGACATCTCTGCGGTAGAC
TCGATCGGGGCCAACGCCATGGCCTTCTTCGAGAGGAAGAGGCTCCAAAG
GAAGCAGAGGGGTGGGGAAAGGGCGGGGGACGGATCAGTAGTGGCGGGGT
CACCGATGAAAGTCGAGAAAGGAGAGGAGAAAAAGGAAGACGAGGCATGG
TTGGACTCATTGCCAAGACACTGGCAGCCGCAGCTGCAGTCTCTACCGCG
GCAGGAAGAGCCCATTGAGGGAAAGCCGGGGGGAGGCTACAACGCATTAG
CCGCGGCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13571:1999..3606+

>mRNA_E-fasciculatus_F_contig13571.2659.1 ID=mRNA_E-fasciculatus_F_contig13571.2659.1|Name=mRNA_E-fasciculatus_F_contig13571.2659.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1284bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13571:1999..3606+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCAACCGCCGTCGCAAACGTCGCTTCCGTTTCGCCACCCTCATCTGCTG
CCTTGCGGCCGTACGAGCTTTTGGACCAGCAGATGAAAAAGTCGGCGGAA
CCGACGCTGCTTCAGCTGCCGGCGAGTTCAACGGCTCGCATGGAGCAAGC
CGCTGCCCATCGTGCCGGCGGCAGGGGAGTCGGCGAAGCGGGTGGCCAGC
GAGACTTGCCCAGCGGAACGTTGTCCCACGGCGATGGGGAGCCAGGTGGG
TCCGACCCGAGACACCCGCGCAGGGACAACGGGTCGCCCCTGTCGAGCGT
GCCGAGAACACCTGCAACTCGGGTTGGAGTGAGGGAGCTACACGGCCACC
AGGCGGCGGACGGGAGAGGTTCGCGCGAGGAATCCGCGCTCCTGCTTACC
CCTGGGTCCGACAAGACGGGAAGGGCGCACCGGGCTTTTCCCTCTCCTGC
CAAGAATCGAAACGGCAGCAGGCGGTCGGCGAGACGAGGGGATTCGGGGT
CGAGCGCAACCGCCGTCGCAAACGTCGCTTCCGTTTCGCCACCCTCATCT
GCTGCCTTGCGGCCGTACGAGCTTTTGGACCAGCAGATGAAAAAGTCGGC
GGAACCGACGCTGCTTCAGCTGCCGGCGAGTTCAACGGCTCGCATGGAGC
AAGCCGCTGCCCATCGTGCCGGCGGCAGGGGAGTCGGCGAAGCGGGTGGC
CAGCGAGACTTGCCCAGCGGAACGTTGTCCCACGGCGATGGGGAGCCAGG
TGGGTCCGACCCGAGACACCCGCGCAGGGACAACGGGTCGCCCCTGTCGA
GCGTGCCGAGAACACCTGCAACTCGGGTTGGAGTGAGGGAGCTACACGGC
CACCAGGCGGCGGACGGGAGAGGTTCGCGCGAGGAATCCGCGCTCCTGCT
TACCCCTGGGTCCGACAAGACGGGAAGGGCGCACCGGGCTTTTCCCTCTC
CTGCCAAGAATCGAAACGGCAGCAGGCGGTCGGCGAGACGAGGGGATTCG
GGGTCGAGATCGTTCTGCCGCCGACGCCACCGACCAAACGGCGAAAAGAA
AAAGTCCCCCGGCGGCGGCGTTGCACCCGGTCGGGTTTCCATGCCTCAAA
GCTCGAAGGAAGCGGGCTCGGTGGACCAAGCCGGCGTTTTCAGTGAATCG
TTCTGCCGCCGACGCCACCGACCAAACGGCGAAAAGAAAAAGTCCCCCGG
CGGCGGCGTTGCACCCGGTCGGGTTTCCATGCCTCAAAGCTCGAAGGAAG
CGGGCTCGGTGGACCAAGCCGGCGTTTTCAGTGA
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