mRNA_E-fasciculatus_F_contig13566.2652.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13566.2652.1
Unique NamemRNA_E-fasciculatus_F_contig13566.2652.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13566.2652.1 vs. uniprot
Match: D7FSZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ2_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.470e-24
Identity = 69/97 (71.13%), Postives = 77/97 (79.38%), Query Frame = 2 
Query:    2 GEENRGNMGDGEVT-TSHGTVEVSQTQSWSLSAEIVQRPQQQHXXXXXXXRMSTRIRMHRIVSDIRTVRREFKTEAFRWRVWQASASRQSEVAGTGD 289
            GEE R N  D +V  T +G+VE SQ+QSWSLSAEIVQRPQQ  XXXXXX R ST I M+RIVSDIRTVRR +KT+AFR RVW+ SA RQ EVAGTGD
Sbjct:   71 GEEARDNRDDFKVANTPNGSVEASQSQSWSLSAEIVQRPQQ-XXXXXXXERFSTLIGMNRIVSDIRTVRRAYKTDAFRLRVWRTSAWRQGEVAGTGD 166
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BLAST of mRNA_E-fasciculatus_F_contig13566.2652.1 vs. uniprot
Match: A0A6H5L667_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L667_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.580e-19
Identity = 60/92 (65.22%), Postives = 66/92 (71.74%), Query Frame = 2 
Query:    2 GEENRGNMGDGEVT-TSHGTVEVSQTQSWSLSAEIVQRPQQQHXXXXXXXRMSTRIRMHRIVSDIRTVRREFKTEAFRWRVWQASASRQSEV 274
            GEE R    DG+VT T +G VE SQTQSWSLSAEIVQRPQQ+        R+ST I MHRIVSDIRTVRR  KT AFR RVW+ +A RQ EV
Sbjct:  947 GEEAREKSDDGKVTNTRNGAVEGSQTQSWSLSAEIVQRPQQRQQQKQRE-RLSTLIGMHRIVSDIRTVRRACKTYAFRLRVWRTAAWRQGEV 1037
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BLAST of mRNA_E-fasciculatus_F_contig13566.2652.1 vs. uniprot
Match: D7FSZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ5_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 4.980e-13
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:    6 RRTGGTWATERSP-PLTARSRSLRPSPGHCPRKSFNDRSSSTSSRSSKRECRPVFECTASCPTSGR 200
            RR G T  T RSP PLTARSR LR SPG CPR+SFNDRSS  SSRS++ + RP+ ECTASCP SGR
Sbjct: 1174 RRQGTTVTTVRSPTPLTARSRPLRASPGRCPRRSFNDRSSG-SSRSNRSDFRPLSECTASCPISGR 1238
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13566.2652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSZ2_ECTSI2.470e-2471.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L667_9PHAE3.580e-1965.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSZ5_ECTSI4.980e-1369.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13566contigE-fasciculatus_F_contig13566:2469..3508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size542
Cds size402
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13566.2652.1prot_E-fasciculatus_F_contig13566.2652.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13566 2608..3508 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927853.5729933-UTR-E-fasciculatus_F_contig13566:2468..26071622927853.5729933-UTR-E-fasciculatus_F_contig13566:2468..2607Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13566 2469..2607 -
1695995724.0364075-UTR-E-fasciculatus_F_contig13566:2468..26071695995724.0364075-UTR-E-fasciculatus_F_contig13566:2468..2607Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13566 2469..2607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927853.5910535-CDS-E-fasciculatus_F_contig13566:2607..27381622927853.5910535-CDS-E-fasciculatus_F_contig13566:2607..2738Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13566 2608..2738 -
1695995724.0475214-CDS-E-fasciculatus_F_contig13566:2607..27381695995724.0475214-CDS-E-fasciculatus_F_contig13566:2607..2738Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13566 2608..2738 -
1622927853.6097145-CDS-E-fasciculatus_F_contig13566:3237..35081622927853.6097145-CDS-E-fasciculatus_F_contig13566:3237..3508Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13566 3238..3508 -
1695995724.0633523-CDS-E-fasciculatus_F_contig13566:3237..35081695995724.0633523-CDS-E-fasciculatus_F_contig13566:3237..3508Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13566 3238..3508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13566.2652.1

>prot_E-fasciculatus_F_contig13566.2652.1 ID=prot_E-fasciculatus_F_contig13566.2652.1|Name=mRNA_E-fasciculatus_F_contig13566.2652.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=134bp
GRGEQGEHGRRRGHHLSRHGRGLSDPVLVIVRGNRSTTAAAAPAAEAARE
NVDPYSNAPHRVRHPDGEEGIQDRGVPLEGVASVGFAAKRGGWDGRLETA
RVEERPDLQRYRPMAKSCLTEVERVGDAGKKGA*
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mRNA from alignment at E-fasciculatus_F_contig13566:2469..3508-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13566.2652.1 ID=mRNA_E-fasciculatus_F_contig13566.2652.1|Name=mRNA_E-fasciculatus_F_contig13566.2652.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1040bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13566:2469..3508- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGCGAGGAGAACAGGGGGAACATGGGCGACGGAGAGGTCACCACCTCTC
ACGGCACGGTCGAGGTCTCTCAGACCCAGTCCTGGTCATTGTCCGCGGAA
ATCGTTCAACGACCGCAGCAGCAGCACCAGCAGCAGAAGCAGCAAGAGAG
AATGTCGACCCGTATTCGAATGCACCGCATCGTGTCCGACATCCGGACGG
TGAGGAGGGAATTCAAGACCGAGGCGTTCCGCTGGAGGGTGTGGCAAGCG
TCGGCTTCGCGGCAAAGCGAGGTGAGGAACCGAACAGTGTTTGACGAACA
GAAAATACATGAGGGTTGGCTGCTGCGCAAGTCGATTGCACTGACTGCTA
GGAAATGGAAGCGGGAAGTAATCCCGTTTCCCATGGCTTTGCTTCTTTTG
TGAATCAAAACGGTGTTGGTGCCCCCTGTCAATACGTCTTTACTGCCCAG
CCAGATTCTGGTAGCACCACGTAGGAGATTGTAGTGAGATCGGGTTGGGA
GATACCTGTCGTTCCCCTGCCTCCCACCGCGAACGGGAAGTACCCCAACA
TATTGTTGTAACACTATCCCCACCTTCAACTCCTGCAGCTATGTAGTGCC
CCCTAGGAAATGACCACAAGCAACTTAGGGATTAGATTTTGTCCACCACA
AAGCAAGAGAGTCAGCAAACAATAGCGCTATCGCCCACCTCACAAGTAGT
CCACCGCTTTCCTCTCGTTATCGCTGATAGCCCCTTCTCGGTCCTCTATC
GTCATTGTTTCGTTTGCCAGGTGGCTGGGACGGGAGACTAGAAACCGCGC
GGGTCGAAGAACGTCCGGATTTACAACGATACCGCCCTATGGCGAAGTCG
TGCTTAACGGAGGTTGAGCGAGTAGGGGACGCCGGGAAAAAAGGTGCCTG
ACAATAGGCGATAAATATACAGCATGACGACTTGTGTTGCAATACCTTGG
GATCATATACGGGGCAGACTACGGCGCGATAGTGTGTGCAACGATGTAGC
ACCATGGACACCATCAAGGTTTCATCTCACCCTCGCCCGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13566:2469..3508-

>mRNA_E-fasciculatus_F_contig13566.2652.1 ID=mRNA_E-fasciculatus_F_contig13566.2652.1|Name=mRNA_E-fasciculatus_F_contig13566.2652.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=804bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13566:2469..3508- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGCGAGGAGAACAGGGGGAACATGGGCGACGGAGAGGTCACCACCTCTC
ACGGCACGGTCGAGGTCTCTCAGACCCAGTCCTGGTCATTGTCCGCGGAA
ATCGTTCAACGACCGCAGCAGCAGCACCAGCAGCAGAAGCAGCAAGAGAG
AATGTCGACCCGTATTCGAATGCACCGCATCGTGTCCGACATCCGGACGG
TGAGGAGGGAATTCAAGACCGAGGCGTTCCGCTGGAGGGTGTGGCAAGCG
TCGGCTTCGCGGCAAAGCGAGGGGCGAGGAGAACAGGGGGAACATGGGCG
ACGGAGAGGTCACCACCTCTCACGGCACGGTCGAGGTCTCTCAGACCCAG
TCCTGGTCATTGTCCGCGGAAATCGTTCAACGACCGCAGCAGCAGCACCA
GCAGCAGAAGCAGCAAGAGAGAATGTCGACCCGTATTCGAATGCACCGCA
TCGTGTCCGACATCCGGACGGTGAGGAGGGAATTCAAGACCGAGGCGTTC
CGCTGGAGGGTGTGGCAAGCGTCGGCTTCGCGGCAAAGCGAGGTGGCTGG
GACGGGAGACTAGAAACCGCGCGGGTCGAAGAACGTCCGGATTTACAACG
ATACCGCCCTATGGCGAAGTCGTGCTTAACGGAGGTTGAGCGAGTAGGGG
ACGCCGGGAAAAAAGGTGCCTGAGTGGCTGGGACGGGAGACTAGAAACCG
CGCGGGTCGAAGAACGTCCGGATTTACAACGATACCGCCCTATGGCGAAG
TCGTGCTTAACGGAGGTTGAGCGAGTAGGGGACGCCGGGAAAAAAGGTGC
CTGA
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