mRNA_E-fasciculatus_F_contig13562.2651.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13562.2651.1 vs. uniprot
Match: D8LIZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIZ5_ECTSI) HSP 1 Score: 229 bits (584), Expect = 4.420e-68 Identity = 181/239 (75.73%), Postives = 184/239 (76.99%), Query Frame = 1
Query: 97 VYIWHRQRGELIGSLDGHAGTVNSVHWNPSRPGMLASVCDDQTVRIWEPPRPKPEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXFGGEGAMRGVGVRFASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGVTEGAREGXXXXXXXXXXXXXXXXXGRRSGVGVKGVKVEGGRRWGYGLGHPVAAGQPWVVDGGGGEGDHDSGYSARIAALRW 813
VYIWHR+RGELIGSLDGHAGTVNSVHWNPSRPGMLASVCDDQTVRIWEPPR KPEQP XXXXX + GEGAMRGVGVRF SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LGVTEG REG XXXXXXX GRRS +GVKGVKVEGGRRWGYGLGHP AAGQ WV DGGGGEGDHDSGYSARIAALRW
Sbjct: 3 VYIWHRKRGELIGSLDGHAGTVNSVHWNPSRPGMLASVCDDQTVRIWEPPRTKPEQPPLXXXXXGDASASAAATGGDAAGCSTGYAGEGAMRGVGVRFGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTE------------LGVTEGGREGGSGNRSXXXXXXXG---GRRSSLGVKGVKVEGGRRWGYGLGHPAAAGQGWVGDGGGGEGDHDSGYSARIAALRW 226
BLAST of mRNA_E-fasciculatus_F_contig13562.2651.1 vs. uniprot
Match: A0A0A9JJT6_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9JJT6_ARUDO) HSP 1 Score: 119 bits (299), Expect = 1.120e-27 Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 1
Query: 1 RYEGHHQNRYIVRSTFGGLDDRFVASGSEDSMVYIWHRQRGELIGSLDGHAGTVNSVHWNPSRPGMLASVCDDQTVRIW 237
RY GH ++R+++RS FGG + F+ASGSEDS VYIWHR G+LI +L GH+GTVN V WNP+ P MLAS DD T+RIW
Sbjct: 61 RYSGHKRSRFVIRSCFGGSEQAFIASGSEDSQVYIWHRATGDLIETLPGHSGTVNCVSWNPANPHMLASASDDHTIRIW 139
BLAST of mRNA_E-fasciculatus_F_contig13562.2651.1 vs. uniprot
Match: A0A6A2XBH6_HIBSY (Transducin family protein / WD-40 repeat family protein isoform 2 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XBH6_HIBSY) HSP 1 Score: 125 bits (315), Expect = 1.470e-27 Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 1
Query: 1 RYEGHHQNRYIVRSTFGGLDDRFVASGSEDSMVYIWHRQRGELIGSLDGHAGTVNSVHWNPSRPGMLASVCDDQTVRIW 237
+Y GH +NR+I+RS FGGLD+ F+ASGSEDS+VY+WHR GELI SL GH+G VN V WNP+ P MLAS DD+T+RIW
Sbjct: 328 KYRGHKRNRFIIRSCFGGLDEAFIASGSEDSLVYLWHRGTGELIESLPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 406
BLAST of mRNA_E-fasciculatus_F_contig13562.2651.1 vs. uniprot
Match: A0A8J5VKG9_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5VKG9_ZIZPA) HSP 1 Score: 118 bits (296), Expect = 2.730e-27 Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1
Query: 1 RYEGHHQNRYIVRSTFGGLDDRFVASGSEDSMVYIWHRQRGELIGSLDGHAGTVNSVHWNPSRPGMLASVCDDQTVRIW 237
RY GH ++R+++RS FGG + F+ASGSEDS +YIWHR G+LI +L GH GTVN V WNP+ P MLAS DD TVRIW
Sbjct: 61 RYAGHKRSRFVIRSCFGGSEQAFIASGSEDSQIYIWHRGTGDLIETLPGHTGTVNCVSWNPANPHMLASASDDHTVRIW 139
BLAST of mRNA_E-fasciculatus_F_contig13562.2651.1 vs. uniprot
Match: A0A1J6I4L3_NICAT (Compass-like h3k4 histone methylase component wdr5b n=8 Tax=Nicotiana TaxID=4085 RepID=A0A1J6I4L3_NICAT) HSP 1 Score: 125 bits (314), Expect = 8.870e-27 Identity = 52/79 (65.82%), Postives = 65/79 (82.28%), Query Frame = 1
Query: 1 RYEGHHQNRYIVRSTFGGLDDRFVASGSEDSMVYIWHRQRGELIGSLDGHAGTVNSVHWNPSRPGMLASVCDDQTVRIW 237
+Y+GH ++R++VRS FGGLD FVASGSEDS VYIWHR GEL+G+L GH+GTVN V WNP+ P MLAS DD+++RIW
Sbjct: 478 KYKGHKRSRFVVRSCFGGLDQAFVASGSEDSQVYIWHRGSGELVGTLAGHSGTVNCVSWNPTNPHMLASASDDRSIRIW 556
BLAST of mRNA_E-fasciculatus_F_contig13562.2651.1 vs. uniprot
Match: UPI0009009328 (WD repeat-containing protein 26-like isoform X1 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI0009009328) HSP 1 Score: 125 bits (314), Expect = 8.990e-27 Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 1
Query: 1 RYEGHHQNRYIVRSTFGGLDDRFVASGSEDSMVYIWHRQRGELIGSLDGHAGTVNSVHWNPSRPGMLASVCDDQTVRIW 237
+++GH +NR++VRS FGGLD+ F+ASGSEDS VYIWHR GEL+G+L GH+GTVN V WN + P MLAS DD+T+RIW
Sbjct: 477 KFKGHKRNRFVVRSCFGGLDEAFIASGSEDSQVYIWHRSSGELVGTLHGHSGTVNCVSWNGANPHMLASASDDRTIRIW 555
BLAST of mRNA_E-fasciculatus_F_contig13562.2651.1 vs. uniprot
Match: A0A2P5Y6X4_GOSBA (Uncharacterized protein n=3 Tax=Gossypium TaxID=3633 RepID=A0A2P5Y6X4_GOSBA) HSP 1 Score: 121 bits (303), Expect = 9.100e-27 Identity = 51/79 (64.56%), Postives = 62/79 (78.48%), Query Frame = 1
Query: 1 RYEGHHQNRYIVRSTFGGLDDRFVASGSEDSMVYIWHRQRGELIGSLDGHAGTVNSVHWNPSRPGMLASVCDDQTVRIW 237
+Y GH + R+I+RS FGGL+ FVASGSEDS+VYIWHR GELI +L GH+G VN V WNP+ P MLAS DD+T+RIW
Sbjct: 219 KYRGHKRTRFIIRSCFGGLEQAFVASGSEDSLVYIWHRGTGELIEALPGHSGAVNCVSWNPTNPHMLASASDDRTIRIW 297
BLAST of mRNA_E-fasciculatus_F_contig13562.2651.1 vs. uniprot
Match: A0A3Q7I4V8_SOLLC (Uncharacterized protein n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=A0A3Q7I4V8_SOLLC) HSP 1 Score: 118 bits (296), Expect = 1.350e-26 Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 1
Query: 1 RYEGHHQNRYIVRSTFGGLDDRFVASGSEDSMVYIWHRQRGELIGSLDGHAGTVNSVHWNPSRPGMLASVCDDQTVRIWEP 243
++EGH Q++Y++RS FGGLD F+ASGSEDS VYIW+R+ + I L GH+ TVNSV WNP RP MLAS DDQT+RIW P
Sbjct: 155 KFEGHRQHKYVIRSCFGGLDSTFIASGSEDSKVYIWNRRGSKPIEILCGHSMTVNSVSWNPKRPQMLASASDDQTIRIWGP 235
BLAST of mRNA_E-fasciculatus_F_contig13562.2651.1 vs. uniprot
Match: A0A7J8X7M7_GOSAI (Uncharacterized protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8X7M7_GOSAI) HSP 1 Score: 120 bits (302), Expect = 1.430e-26 Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 1
Query: 1 RYEGHHQNRYIVRSTFGGLDDRFVASGSEDSMVYIWHRQRGELIGSLDGHAGTVNSVHWNPSRPGMLASVCDDQTVRIW 237
+Y GH + R+I+RS FGGL+ F+ASGSEDS+VYIWHR GELI +L GH+G VN V WNP+ P MLAS DD+T+RIW
Sbjct: 226 KYRGHKRTRFIIRSCFGGLEQAFIASGSEDSLVYIWHRGTGELIETLPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 304
BLAST of mRNA_E-fasciculatus_F_contig13562.2651.1 vs. uniprot
Match: UPI0009017F1C (WD repeat-containing protein 26-like n=3 Tax=Ipomoea TaxID=4119 RepID=UPI0009017F1C) HSP 1 Score: 124 bits (312), Expect = 1.560e-26 Identity = 53/79 (67.09%), Postives = 62/79 (78.48%), Query Frame = 1
Query: 1 RYEGHHQNRYIVRSTFGGLDDRFVASGSEDSMVYIWHRQRGELIGSLDGHAGTVNSVHWNPSRPGMLASVCDDQTVRIW 237
+Y+GH + RY+VRS FGGLD F+ASGSEDS VYIWHR GEL+G L GH+GTVN V WNP P MLAS DD+T+RIW
Sbjct: 470 KYKGHKRCRYVVRSCFGGLDQAFIASGSEDSQVYIWHRGSGELVGMLRGHSGTVNCVSWNPVNPHMLASASDDRTIRIW 548 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13562.2651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13562.2651.1 >prot_E-fasciculatus_F_contig13562.2651.1 ID=prot_E-fasciculatus_F_contig13562.2651.1|Name=mRNA_E-fasciculatus_F_contig13562.2651.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=241bp MVYIWHRQRGELIGSLDGHAGTVNSVHWNPSRPGMLASVCDDQTVRIWEPback to top mRNA from alignment at E-fasciculatus_F_contig13562:748..3524- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13562.2651.1 ID=mRNA_E-fasciculatus_F_contig13562.2651.1|Name=mRNA_E-fasciculatus_F_contig13562.2651.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2777bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13562:748..3524- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13562:748..3524- >mRNA_E-fasciculatus_F_contig13562.2651.1 ID=mRNA_E-fasciculatus_F_contig13562.2651.1|Name=mRNA_E-fasciculatus_F_contig13562.2651.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1446bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13562:748..3524- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |