mRNA_E-fasciculatus_F_contig1356.2649.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1356.2649.1
Unique NamemRNA_E-fasciculatus_F_contig1356.2649.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1356.2649.1 vs. uniprot
Match: D7G2F8_ECTSI (DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F8_ECTSI)

HSP 1 Score: 396 bits (1018), Expect = 6.510e-136
Identity = 198/212 (93.40%), Postives = 203/212 (95.75%), Query Frame = 1 
Query:    1 MAVKGGFGARNPDVGKKRHTFHCQLTTNSRGHAANSEAANMLEDLAKLCAVRGGDGSVFKERGFKNAAGVLRRLGTQITNIQQLKDLRKHEPQRVRGLGDSVMKELSTFYEEGKMHRLDGLEADPKLKCLKLFQEISWVGAVKAHQLYDKGMRSIEDLRTKGLHLLSEQAQICLNSRHEDITQRMPRSEAAEIEGVVTKVAQSMCPGVICQA 636
            MAVKGGFGARNPDVGKKRHTFHCQ TT SRGHAANSEAANMLEDLAKLCAVRGGDGSVFKERGFKNAAGVLRRLG QITNIQQLKDLRKHEPQRVRGLGDSVMKELSTFYEEG+MHRLDGLEADPKLKCLK+ QE+ WVGAVKA QLYDKG+RSIEDLRTKGLHLLSEQAQICL SRHEDI QRMPRSEAAEIE VVTKVAQS+CPGVICQA
Sbjct:    1 MAVKGGFGARNPDVGKKRHTFHCQSTTTSRGHAANSEAANMLEDLAKLCAVRGGDGSVFKERGFKNAAGVLRRLGVQITNIQQLKDLRKHEPQRVRGLGDSVMKELSTFYEEGRMHRLDGLEADPKLKCLKILQEVGWVGAVKAQQLYDKGVRSIEDLRTKGLHLLSEQAQICL-SRHEDIMQRMPRSEAAEIEAVVTKVAQSICPGVICQA 211
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1356.2649.1 vs. uniprot
Match: A0A6H5JHQ3_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ3_9PHAE)

HSP 1 Score: 380 bits (977), Expect = 5.680e-124
Identity = 188/207 (90.82%), Postives = 199/207 (96.14%), Query Frame = 1 
Query:    1 MAVKGGFGARNPDVGKKRHTFHCQLTTNSRGHAANSEAANMLEDLAKLCAVRGGDGSVFKERGFKNAAGVLRRLGTQITNIQQLKDLRKHEPQRVRGLGDSVMKELSTFYEEGKMHRLDGLEADPKLKCLKLFQEISWVGAVKAHQLYDKGMRSIEDLRTKGLHLLSEQAQICLNSRHEDITQRMPRSEAAEIEGVVTKVAQSMCPG 621
            MAVKGGFGARNPDVGKKRHTFHCQ TTNSRGHA NSEAA+MLEDLAKLCAVRGGDGSVFKERGFKNAAGVL+RLG QITNIQQLKDLRKHEPQRVRGLGDSVMKEL+TFYEEG+M+RLD LEADPKLKCLK+FQE+ WVGAVKA QLYD+G+RSIEDLRTKGLHLLSEQAQICLN RHEDITQRMPRSEAAEIE VVT+VAQS+CPG
Sbjct:  477 MAVKGGFGARNPDVGKKRHTFHCQSTTNSRGHAVNSEAADMLEDLAKLCAVRGGDGSVFKERGFKNAAGVLKRLGVQITNIQQLKDLRKHEPQRVRGLGDSVMKELATFYEEGRMYRLDELEADPKLKCLKIFQEVGWVGAVKAQQLYDQGIRSIEDLRTKGLHLLSEQAQICLN-RHEDITQRMPRSEAAEIEAVVTRVAQSICPG 682
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1356.2649.1 vs. uniprot
Match: D7G2F7_ECTSI (DNA polymerase lambda n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F7_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 2.360e-76
Identity = 139/215 (64.65%), Postives = 162/215 (75.35%), Query Frame = 1 
Query:    1 MAVKGGFGARNPDVGKKRHTFHCQLTTNSRGHAANSEAANMLEDLAKLCAVRGGDGSVFKERGFKNAAGVLRRLGTQITNIQQLKDLRKHEPQRVRGLGDSVMKELSTFYEEGK-MHRLDGLEADPKLK--CLKLFQEISWVGAVKAHQLYDKGMRSIEDLRTKGLHLLSEQAQICLNSRHEDITQRMPRSEAAEIEGVVTKVAQSMCPGVICQA 636
            M ++G  GAR P+V  +R     Q ++     + N EAA+ML+ LA+LCA RGGDGSVF ERGFK+AA  LR LGTQIT+I+QLKDLRK++P+RVRG+GD  MKEL+ F  EGK   R     ADP     CLKLFQE+ WVGAVKA QLYDKGMRSIEDLRT G  LL+EQ ++CLN RHEDI QRMPRSEAAEIE  VTKVAQS+CPGVICQA
Sbjct:  258 MNLEGEVGARKPNVDMRR-VSQGQPSSFWGPQSPNKEAADMLDGLAELCATRGGDGSVFNERGFKSAAAALRMLGTQITDIEQLKDLRKNDPERVRGVGDGAMKELTAFLAEGKGKSRAPVSGADPPAPEACLKLFQEVGWVGAVKARQLYDKGMRSIEDLRTSGRDLLTEQMRVCLN-RHEDIKQRMPRSEAAEIEAAVTKVAQSICPGVICQA 470
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BLAST of mRNA_E-fasciculatus_F_contig1356.2649.1 vs. uniprot
Match: A0A6H5JQ91_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ91_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 3.710e-47
Identity = 97/161 (60.25%), Postives = 110/161 (68.32%), Query Frame = 1 
Query:  160 GDGSVFKERGFKNAAGVLRRLGTQITNIQQLKDLRKHEPQRVRGLGDSVMKELSTFYEEGKMHRLDGLEADPKL--KCLKLFQEISWVGAVKAHQLYDKGMRSIEDLRTKGLHLLSEQAQICLNSRHEDITQRMPRSEAAEIEGVVTKVAQSMCPGVICQA 636
            GDGSVF ERGFK+AA  LR LGTQIT+I+QLK+  +   +               F    +  R    E DP     CLKLFQE+ WVGAVK  QLYDKGMRSIE+LRT+G HLL+EQ + CLN RHEDI  RMPRSEAAEIE  VTKVAQS+CPGVICQA
Sbjct:  285 GDGSVFNERGFKSAAATLRMLGTQITDIEQLKETSERGSR--------------PFLPRARARRSPVSEVDPPTVEACLKLFQEVGWVGAVKTQQLYDKGMRSIENLRTRGRHLLTEQVRFCLN-RHEDIKPRMPRSEAAEIEAAVTKVAQSICPGVICQA 430
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1356.2649.1 vs. uniprot
Match: A0A077ZZ96_STYLE (DNA polymerase n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZZ96_STYLE)

HSP 1 Score: 85.9 bits (211), Expect = 6.570e-16
Identity = 56/169 (33.14%), Postives = 92/169 (54.44%), Query Frame = 1 
Query:  103 NSEAANMLEDLAKLCAVRGGDGSVFKERGFKNAAGVLRRLGTQITNIQQLKDLRKHEPQRVRGLGDSVMKELSTFYEEGKMHRLDGLEADPKLKCLKLFQEISWVGAVKAHQLYDKGMRSIEDLRTKGLHLLSEQAQICLNSRHEDITQRMPRSEAAEIEGVVTKVAQS 609
            N+E A+ L+ L K    +G  G +F   G+K A   L+     I NI Q+         +V  +GD + K++  F ++G + R + ++ D K   LKL + +  +G   A +LYDK +R+IEDLR K  HLL++  +I L   HED  +++PR E   +E ++ +V Q+
Sbjct:  215 NNEIADQLDRLLKYYTTQGDRGRMF---GYKRALTSLKLFNEPIYNIDQI--------DKVPNIGDGIRKKIKEFIDDGIIKRFEFIDTDEKHNTLKLIESVWGIGPKNAQKLYDKKIRTIEDLR-KNQHLLTDMQKIGLKY-HEDFIEKIPRKE---VEQLLERVKQT 367
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1356.2649.1 vs. uniprot
Match: J9HWK2_9SPIT (DNA polymerase n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9HWK2_9SPIT)

HSP 1 Score: 83.6 bits (205), Expect = 3.340e-15
Identity = 60/197 (30.46%), Postives = 99/197 (50.25%), Query Frame = 1 
Query:   28 RNPDVGKKRHTFHCQLTTNSRGHAANSEAANMLEDLAKLCAVRGGDGSVFKERGFKNAAGVLRRLGTQITNIQQLKDLRKHEPQRVRGLGDSVMKELSTFYEEGKMHRLDGLEADPKLKCLKLFQEISWVGAVKAHQLYDKGMRSIEDLRTKGLHLLSEQAQICLNSRHEDITQRMPRSEAAEIEGVVTKVAQSMCP 618
            +N D GKKR                N+E A  L+ L K        G ++   G+K A   +R +   I ++ QLKD        V  +G+ ++K+L  +  EG + R + ++ D K+K L+LF+++  +G  KA +L+DK MRSIEDLR     LL+   +I L    ED  +++PR E  ++   V +++  + P
Sbjct:  100 QNGDSGKKR--------------PLNNEIAEQLDRLFKYYQTLKDKGRMW---GYKRAVTQVRSIKEPIYSLDQLKD--------VPNIGEGILKKLREYVAEGSIKRFEFIDTDEKIKTLQLFEQVWGIGPSKAQELWDKKMRSIEDLRNHQ-SLLTSMQKIGLKY-FEDFNEKIPREEVTKLLEKVREISYKVIP 269
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1356.2649.1 vs. uniprot
Match: A0A251R3K5_PRUPE (DNA polymerase n=2 Tax=Prunus persica TaxID=3760 RepID=A0A251R3K5_PRUPE)

HSP 1 Score: 82.4 bits (202), Expect = 7.610e-15
Identity = 51/170 (30.00%), Postives = 91/170 (53.53%), Query Frame = 1 
Query:  118 NMLEDLAKLCAVRGGDGSVFKERGFKNAAGVLRRLGTQITNIQQLKDLRKHEPQRVRGLGDSVMKELSTFYEEGKMHRLDGLEADPKLKCLKLFQEISWVGAVKAHQLYDKGMRSIEDLRTKGLHLLSEQAQICLNSRHEDITQRMPRSEAAEIEGVVTKVAQSMCPGVI 627
            N+ +   KL  +    G   +   +  A  V+ +L  +I ++ Q+KDL          +G S+   +      GK+ +L+  E D K++ L LF+EI  VG   A +LY+KG R+++DL+ +     S++  +     ++DI QR+PR EA E+E ++ KV +++ PGV+
Sbjct:  174 NITQIFGKLINIYRALGDDRRSFSYYKAVPVIEKLPFKIQSVDQVKDLPN--------IGKSMQDHIQEIVTTGKLSKLEHFETDEKVRTLALFEEIWGVGPATALKLYEKGHRTLDDLKNEDSLTNSQKLGL---RYYDDIKQRIPRHEAEEMEHLLQKVGENVLPGVV 332
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BLAST of mRNA_E-fasciculatus_F_contig1356.2649.1 vs. uniprot
Match: A0A4Y1QQK2_PRUDU (DNA polymerase (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QQK2_PRUDU)

HSP 1 Score: 82.0 bits (201), Expect = 1.490e-14
Identity = 53/178 (29.78%), Postives = 93/178 (52.25%), Query Frame = 1 
Query:   94 HAANSEAANMLEDLAKLCAVRGGDGSVFKERGFKNAAGVLRRLGTQITNIQQLKDLRKHEPQRVRGLGDSVMKELSTFYEEGKMHRLDGLEADPKLKCLKLFQEISWVGAVKAHQLYDKGMRSIEDLRTKGLHLLSEQAQICLNSRHEDITQRMPRSEAAEIEGVVTKVAQSMCPGVI 627
            H +  +  N+   +  L    G D   F    +  A  V+ +L  +I ++ Q+KDL          +G S+   +      GK+ +L+  E D K++ L LF+EI  VG   A +LY+KG R+++DL+ +     S++  +     ++DI QR+PR EA E+E ++ KV +++ PGV+
Sbjct:  174 HTSIPKTLNLQIRIRSLHCTLGDDRRSFS---YYKAVPVIEKLPFKIQSVDQVKDLPN--------IGKSMQDHIQEIVTTGKLSKLEHFETDEKVRTLALFEEIWGVGPATALKLYEKGHRTLDDLKNEDSLTNSQKLGL---RYYDDIKQRIPRHEAEEMEHLLQKVGENVLPGVV 337
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BLAST of mRNA_E-fasciculatus_F_contig1356.2649.1 vs. uniprot
Match: UPI001E1DF101 (DNA polymerase lambda-like isoform X2 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF101)

HSP 1 Score: 81.6 bits (200), Expect = 1.900e-14
Identity = 54/190 (28.42%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   67 CQLTTNSRGHAANSEAANMLEDLAKLCAVRGGDGSVFKERGFKNAAGVLRRLGTQITNIQQLKDLRKHEPQRVRGLGDSVMKELSTFYEEGKMHRLDGLEADPKLKCLKLFQEISWVGAVKAHQLYDKGMRSIEDLRTKGLHLLSEQAQICLNSRHEDITQRMPRSEAAEIEGVVTKVAQSMCPGVICQA 636
            C  ++ +     N    + LE++ +           F   G++ A  VL++    IT+ +        E   +  +G  + +++    E G++ +L+ L +  ++K +++F+++   GA  A   Y +G R++EDLR K    L+ Q ++ L   ++DI  RMPRSEA EIE VV   A+S+  G+ICQA
Sbjct:  230 CAQSSKTAVENCNKHITDKLEEMVRTYESTNDKWRAF---GYQKAIQVLKKQSKPITSYE--------EAMALPSIGKRLAEKIWEIAESGELRKLNELRSSDEIKVIEMFKDVWGAGAHTARTWYQQGFRTLEDLRMKAN--LTHQQKVGLRC-YDDILDRMPRSEAGEIEKVVKDAAESLQEGIICQA 405
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1356.2649.1 vs. uniprot
Match: UPI001E1DAC20 (DNA polymerase lambda-like isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DAC20)

HSP 1 Score: 81.6 bits (200), Expect = 1.960e-14
Identity = 54/190 (28.42%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   67 CQLTTNSRGHAANSEAANMLEDLAKLCAVRGGDGSVFKERGFKNAAGVLRRLGTQITNIQQLKDLRKHEPQRVRGLGDSVMKELSTFYEEGKMHRLDGLEADPKLKCLKLFQEISWVGAVKAHQLYDKGMRSIEDLRTKGLHLLSEQAQICLNSRHEDITQRMPRSEAAEIEGVVTKVAQSMCPGVICQA 636
            C  ++ +     N    + LE++ +           F   G++ A  VL++    IT+ +        E   +  +G  + +++    E G++ +L+ L +  ++K +++F+++   GA  A   Y +G R++EDLR K    L+ Q ++ L   ++DI  RMPRSEA EIE VV   A+S+  G+ICQA
Sbjct:  230 CAQSSKTAVENCNKHITDKLEEMVRTYESTNDKWRAF---GYQKAIQVLKKQSKPITSYE--------EAMALPSIGKRLAEKIWEIAESGELRKLNELRSSDEIKVIEMFKDVWGAGAHTARTWYQQGFRTLEDLRMKAN--LTHQQKVGLRC-YDDILDRMPRSEAGEIEKVVKDAAESLQEGIICQA 405
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1356.2649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2F8_ECTSI6.510e-13693.40DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5JHQ3_9PHAE5.680e-12490.82DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G2F7_ECTSI2.360e-7664.65DNA polymerase lambda n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JQ91_9PHAE3.710e-4760.25DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A077ZZ96_STYLE6.570e-1633.14DNA polymerase n=1 Tax=Stylonychia lemnae TaxID=59... [more]
J9HWK2_9SPIT3.340e-1530.46DNA polymerase n=1 Tax=Oxytricha trifallax TaxID=1... [more]
A0A251R3K5_PRUPE7.610e-1530.00DNA polymerase n=2 Tax=Prunus persica TaxID=3760 R... [more]
A0A4Y1QQK2_PRUDU1.490e-1429.78DNA polymerase (Fragment) n=1 Tax=Prunus dulcis Ta... [more]
UPI001E1DF1011.900e-1428.42DNA polymerase lambda-like isoform X2 n=1 Tax=Merc... [more]
UPI001E1DAC201.960e-1428.42DNA polymerase lambda-like isoform X1 n=2 Tax=Merc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1356contigE-fasciculatus_F_contig1356:12697..14862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score398.3
Seed ortholog evalue2.3e-108
Seed eggNOG ortholog2880.D7G2F8
Preferred namePOLB
KEGG rclassRC00536
KEGG koko:K01834,ko:K02330,ko:K03512,ko:K10981
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03410,ko03450,ko04922,ko05166,ko05203,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03410,map03450,map04922,map05166,map05203,map05230
KEGG ModuleM00001,M00002,M00003,M00296
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000726,GO:0000793,GO:0000794,GO:0000795,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002562,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0003906,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006281,GO:0006284,GO:0006285,GO:0006286,GO:0006287,GO:0006288,GO:0006289,GO:0006290,GO:0006302,GO:0006303,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007275,GO:0007431,GO:0007435,GO:0007568,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009653,GO:0009887,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010332,GO:0012501,GO:0015630,GO:0015631,GO:0016311,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016579,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0019538,GO:0019899,GO:0022612,GO:0023052,GO:0030145,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0033152,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035272,GO:0035556,GO:0036211,GO:0036296,GO:0042221,GO:0042493,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0045471,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0048513,GO:0048534,GO:0048535,GO:0048536,GO:0048731,GO:0048732,GO:0048856,GO:0048872,GO:0050789,GO:0050794,GO:0050896,GO:0051103,GO:0051402,GO:0051575,GO:0051716,GO:0055093,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070646,GO:0070647,GO:0070997,GO:0071704,GO:0071707,GO:0071897,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097510,GO:0098501,GO:0098502,GO:0099080,GO:0099081,GO:0099086,GO:0099512,GO:0099513,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901700
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsCOG1796@1,KOG2534@2759
EC2.7.7.7,5.4.2.11
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons4
Model size637
Cds size636
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1356.2649.1prot_E-fasciculatus_F_contig1356.2649.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1356 12697..14862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927853.199763-CDS-E-fasciculatus_F_contig1356:12696..127921622927853.199763-CDS-E-fasciculatus_F_contig1356:12696..12792Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1356 12697..12792 +
1695995723.8818982-CDS-E-fasciculatus_F_contig1356:12696..127921695995723.8818982-CDS-E-fasciculatus_F_contig1356:12696..12792Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1356 12697..12792 +
1622927853.2105875-CDS-E-fasciculatus_F_contig1356:12988..131471622927853.2105875-CDS-E-fasciculatus_F_contig1356:12988..13147Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1356 12989..13147 +
1695995723.894559-CDS-E-fasciculatus_F_contig1356:12988..131471695995723.894559-CDS-E-fasciculatus_F_contig1356:12988..13147Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1356 12989..13147 +
1622927853.2211902-CDS-E-fasciculatus_F_contig1356:13792..140641622927853.2211902-CDS-E-fasciculatus_F_contig1356:13792..14064Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1356 13793..14064 +
1695995723.9038377-CDS-E-fasciculatus_F_contig1356:13792..140641695995723.9038377-CDS-E-fasciculatus_F_contig1356:13792..14064Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1356 13793..14064 +
1622927853.232778-CDS-E-fasciculatus_F_contig1356:14753..148621622927853.232778-CDS-E-fasciculatus_F_contig1356:14753..14862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1356 14754..14862 +
1695995723.9134135-CDS-E-fasciculatus_F_contig1356:14753..148621695995723.9134135-CDS-E-fasciculatus_F_contig1356:14753..14862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1356 14754..14862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1356.2649.1

>prot_E-fasciculatus_F_contig1356.2649.1 ID=prot_E-fasciculatus_F_contig1356.2649.1|Name=mRNA_E-fasciculatus_F_contig1356.2649.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=212bp
MAVKGGFGARNPDVGKKRHTFHCQLTTNSRGHAANSEAANMLEDLAKLCA
VRGGDGSVFKERGFKNAAGVLRRLGTQITNIQQLKDLRKHEPQRVRGLGD
SVMKELSTFYEEGKMHRLDGLEADPKLKCLKLFQEISWVGAVKAHQLYDK
GMRSIEDLRTKGLHLLSEQAQICLNSRHEDITQRMPRSEAAEIEGVVTKV
AQSMCPGVICQA
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mRNA from alignment at E-fasciculatus_F_contig1356:12697..14862+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1356.2649.1 ID=mRNA_E-fasciculatus_F_contig1356.2649.1|Name=mRNA_E-fasciculatus_F_contig1356.2649.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2166bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1356:12697..14862+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGTGAAGGGTGGGTTCGGCGCCAGGAACCCCGACGTCGGCAAAAA
GAGGCACACGTTTCACTGCCAATTGACCACCAACTCCCGGGGCCATGTGA
GATAGCCGGAACTAAAGTGCTTCGCTTGGTGTCTCTTGGTAGATGCGACA
CACCAGCTTACTACGTAGTCTCAAAGAATATAACTGGTGATACGCTATGG
TGCTGATAGACTTATACCACACTTGTGTGTTGTCGTCCTCTTTTACACTT
GGAACGCTTCTCTCTCCTGTGTACTTCCCCTCCTTTCGACAGGCAGCAAA
CAGTGAGGCCGCCAATATGCTGGAAGACCTGGCCAAGCTGTGCGCCGTCC
GCGGCGGCGACGGAAGCGTTTTCAAAGAGAGGGGTTTCAAGAACGCGGCG
GGGGTGCTCAGGAGGCTTGGGACGCAAATCACCAACATCCAGCAGCTCAA
GGTTTGCGATGGGTTGTTTCAATCAATCCTAAATTATGTACAAACGCTCA
CAACAATAGGTTTTGATAGATAGAAGGTGGCCTTCCGTGGTCGCACAATG
GATGTTAAGCTATCGATCCACTTTTTATCAGGAATGCGGCGAGAAATAGG
TTCTGTCGTGAAATACGTGGAAAGGTGTAGGCATCTCAAAGATAGTTCTG
TTCGCGTGGGACAATGCAAGAACCGGGGTAGCTCTTTTTGTCGTCATGTG
TTGCTAGACCATTGCTTGTGTGTTTTTCGTATGAGTATTCGCCGCACCAG
ACAGCTGAACGATTCAAGGTATGCCAAGAACTCCTTGTGTGTATATCCCT
CGATGACGTCCCTGCCGTCGGTGTCTGCCGGCCGCATTGTGTGTGTCATT
GCCTGTCTCGGAACCATCAGCAAGTTGACGCAACCACGGCACGTGGCACA
TATACTGTGATCTGGACGAGCATGACGCCATTCGTCGATTTAAGGATTTG
TTGCTCGTCGTTGTGTTACACAGCAGGTTTGCTTTGTACATCTTTTCAGC
GCCTGATTTTGGCGCCCTGAACTCACCTATGACACGGCCGCCAACAGAGT
TTACGCTGTTCTGTATTGGTTCTGTTTGTTTGTGCTCTCTTCGTAGGACC
TGAGGAAACACGAACCCCAGCGTGTCCGAGGTCTCGGAGACAGCGTGATG
AAGGAGCTCTCGACCTTCTACGAAGAGGGCAAGATGCATCGCCTCGACGG
GCTGGAGGCAGACCCCAAGCTCAAGTGCCTCAAGCTCTTTCAGGAGATCA
GCTGGGTGGGCGCCGTCAAGGCGCACCAGCTGTACGACAAGGGCATGCGC
TCAATCGAAGACCTCAGGACCAAGGGGCTGCACCTGCTGAGCGAGCAAGC
ACAGATTTGCCTCAACAGGTGTAAATATGCGTGGCTTCGTTTAACTAGAC
AAAACCTAGCGGCAATGGACGCGGGAGGCGTGATTCAGTCGCGGTAGTAC
CGGGCACCACGAACATTGGCAGGGGAGGGACCGAGTGAGCACGGTTTTTC
CCATCAGATAATGTTTCTTTTGTTCCCCTAGAAAGTGGAGTAAAACAACA
AAAAATTTCCCTCGTCAATCTGTCCCTTTGCTGTATCGGTTTGCAGGTTG
GCTGTCAGGCTGGTCCAACCTAAAATATTTGAACATAACGCACGATACAC
TCTGCGGAGTTGCGCCACAGATGGGAAGAAAATTGCTGCTGTATTCTCCA
TCGTCGTGCACAACCGTTTTTGGTAGACAAATTGAATGCCGTAGGCTGCG
CGCGGTGATCAATCGGAGCGGGTGGACTACGAGCGGTGTGAACAACCTCG
CCAAACATCCTGAAAGCTGATGCAATCATGAATGAAGTATTGATACCATC
TGCCTGTTCTGTGTACGCAGGAGCACCTGCGCCGGGTTGTTGTTTCTCAT
TGTTCTTGTTAGCAATGTACCAACCTACAGGCCTCGATCACCCTCCGTTT
TGTAACCCAGGATACGTCACTTGAGTTTACACCCACCCATCCATCCTGTC
CTCAACTTGCTTTGACCGTATTTTTCGTCCGTACCCTCGCCCCCCCCTGG
GGGGGAGCAGACACGAGGACATAACGCAGCGCATGCCGCGGTCCGAGGCC
GCTGAGATCGAAGGGGTGGTCACGAAGGTTGCCCAGAGCATGTGCCCGGG
AGTGATCTGCCAGGCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1356:12697..14862+

>mRNA_E-fasciculatus_F_contig1356.2649.1 ID=mRNA_E-fasciculatus_F_contig1356.2649.1|Name=mRNA_E-fasciculatus_F_contig1356.2649.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1272bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1356:12697..14862+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGTGAAGGGTGGGTTCGGCGCCAGGAACCCCGACGTCGGCAAAAA
GAGGCACACGTTTCACTGCCAATTGACCACCAACTCCCGGGGCCATATGG
CGGTGAAGGGTGGGTTCGGCGCCAGGAACCCCGACGTCGGCAAAAAGAGG
CACACGTTTCACTGCCAATTGACCACCAACTCCCGGGGCCATGCAGCAAA
CAGTGAGGCCGCCAATATGCTGGAAGACCTGGCCAAGCTGTGCGCCGTCC
GCGGCGGCGACGGAAGCGTTTTCAAAGAGAGGGGTTTCAAGAACGCGGCG
GGGGTGCTCAGGAGGCTTGGGACGCAAATCACCAACATCCAGCAGCTCAA
GGCAGCAAACAGTGAGGCCGCCAATATGCTGGAAGACCTGGCCAAGCTGT
GCGCCGTCCGCGGCGGCGACGGAAGCGTTTTCAAAGAGAGGGGTTTCAAG
AACGCGGCGGGGGTGCTCAGGAGGCTTGGGACGCAAATCACCAACATCCA
GCAGCTCAAGGACCTGAGGAAACACGAACCCCAGCGTGTCCGAGGTCTCG
GAGACAGCGTGATGAAGGAGCTCTCGACCTTCTACGAAGAGGGCAAGATG
CATCGCCTCGACGGGCTGGAGGCAGACCCCAAGCTCAAGTGCCTCAAGCT
CTTTCAGGAGATCAGCTGGGTGGGCGCCGTCAAGGCGCACCAGCTGTACG
ACAAGGGCATGCGCTCAATCGAAGACCTCAGGACCAAGGGGCTGCACCTG
CTGAGCGAGCAAGCACAGATTTGCCTCAACAGGACCTGAGGAAACACGAA
CCCCAGCGTGTCCGAGGTCTCGGAGACAGCGTGATGAAGGAGCTCTCGAC
CTTCTACGAAGAGGGCAAGATGCATCGCCTCGACGGGCTGGAGGCAGACC
CCAAGCTCAAGTGCCTCAAGCTCTTTCAGGAGATCAGCTGGGTGGGCGCC
GTCAAGGCGCACCAGCTGTACGACAAGGGCATGCGCTCAATCGAAGACCT
CAGGACCAAGGGGCTGCACCTGCTGAGCGAGCAAGCACAGATTTGCCTCA
ACAGCAGACACGAGGACATAACGCAGCGCATGCCGCGGTCCGAGGCCGCT
GAGATCGAAGGGGTGGTCACGAAGGTTGCCCAGAGCATGTGCCCGGGAGT
GATCTGCCAGGCACAGACACGAGGACATAACGCAGCGCATGCCGCGGTCC
GAGGCCGCTGAGATCGAAGGGGTGGTCACGAAGGTTGCCCAGAGCATGTG
CCCGGGAGTGATCTGCCAGGCA
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