mRNA_E-fasciculatus_F_contig13555.2646.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13555.2646.1
Unique NamemRNA_E-fasciculatus_F_contig13555.2646.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13555.2646.1 vs. uniprot
Match: D8LNC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC9_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 6.720e-29
Identity = 61/87 (70.11%), Postives = 69/87 (79.31%), Query Frame = 2 
Query:  230 MIRARRQRSSARPKGWPVRLGKLERYDESSISNFAYAVHMRDFMGDQTPPEIAPLEAGRLKMNFVQAVMVAVEIHEEGLFRHIITYL 490
            M+RARRQRS AR KGW  RL KL+ YDE++I  +A    MRDFMG QTPPEI  LEAGRLKMNFV+AV  A+EI EEGLFRHII+YL
Sbjct:    1 MMRARRQRSLARSKGWQARLRKLDHYDEANIMKYA----MRDFMGSQTPPEIELLEAGRLKMNFVRAVTAAIEIPEEGLFRHIISYL 83
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BLAST of mRNA_E-fasciculatus_F_contig13555.2646.1 vs. uniprot
Match: D8LNB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB4_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.040e-27
Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 2 
Query:  230 MIRARRQRSS-ARPKGWPVRLGKLERYDESSISNFAYAVHMRDFMGDQTPPEIAPLEAGRLKMNFVQAVMVAVEIHEEGLFRHIITYL 490
            M+RAR +RSS AR KGW  RL KLERYDE+SI  +A    MRDFMG QTPPEI  LEAGRLKMNFV+AV+  VEI EEGLFRHI++YL
Sbjct:    1 MMRARHERSSSARSKGWRARLRKLERYDEASIIKYA----MRDFMGGQTPPEIELLEAGRLKMNFVRAVIAVVEIQEEGLFRHIMSYL 84
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BLAST of mRNA_E-fasciculatus_F_contig13555.2646.1 vs. uniprot
Match: D7FME9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME9_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 3.240e-25
Identity = 62/109 (56.88%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:  164 RLLKRLERNSGQETWKARGWLIMIRARRQRSSARPKGWPVRLGKLERYDESSISNFAYAVHMRDFMGDQTPPEIAPLEAGRLKMNFVQAVMVAVEIHEEGLFRHIITYL 490
            R ++RL    GQ  W A GWLIMIRAR QR  ARPKGWP+RL KLER++E++I      VH       + PPE+  LEAGR +MNFV+AV   VEI+EEGLFRHII++L
Sbjct:  199 RAVERLRTFPGQRRWHAGGWLIMIRARHQRFLARPKGWPIRLRKLERFNEANI------VH-------KIPPELELLEAGRSRMNFVRAVTAVVEINEEGLFRHIISFL 294
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BLAST of mRNA_E-fasciculatus_F_contig13555.2646.1 vs. uniprot
Match: D7FMF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF1_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.680e-17
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 2 
Query:  230 MIRARRQRSSARPKGWPVRLGKLERYDESSISNFAYAVHMRDFMGDQTPPEIAPLEAGRLKMNFVQAVMVAVEIHEEGLFRHIITYL 490
            M+RAR QRS  R  GWPVRL KLERY++++I N             + PPE+  LEAGR +MNF +A M  VE +EEGLFRHII++L
Sbjct:    1 MLRARHQRSLGRSTGWPVRLRKLERYNKANIFN-------------KIPPELELLEAGRSRMNFARAAMAVVETNEEGLFRHIISFL 74
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13555.2646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LNC9_ECTSI6.720e-2970.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNB4_ECTSI1.040e-2770.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FME9_ECTSI3.240e-2556.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMF1_ECTSI1.680e-1752.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13555contigE-fasciculatus_F_contig13555:1127..2527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size988
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13555.2646.1prot_E-fasciculatus_F_contig13555.2646.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13555 1143..2032 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927852.8426797-UTR-E-fasciculatus_F_contig13555:1126..11421622927852.8426797-UTR-E-fasciculatus_F_contig13555:1126..1142Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13555 1127..1142 +
1695995723.6908042-UTR-E-fasciculatus_F_contig13555:1126..11421695995723.6908042-UTR-E-fasciculatus_F_contig13555:1126..1142Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13555 1127..1142 +
1622927852.8784547-UTR-E-fasciculatus_F_contig13555:2032..25271622927852.8784547-UTR-E-fasciculatus_F_contig13555:2032..2527Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13555 2033..2527 +
1695995723.722091-UTR-E-fasciculatus_F_contig13555:2032..25271695995723.722091-UTR-E-fasciculatus_F_contig13555:2032..2527Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13555 2033..2527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927852.857082-CDS-E-fasciculatus_F_contig13555:1142..12601622927852.857082-CDS-E-fasciculatus_F_contig13555:1142..1260Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13555 1143..1260 +
1695995723.7013862-CDS-E-fasciculatus_F_contig13555:1142..12601695995723.7013862-CDS-E-fasciculatus_F_contig13555:1142..1260Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13555 1143..1260 +
1622927852.8674037-CDS-E-fasciculatus_F_contig13555:1673..20321622927852.8674037-CDS-E-fasciculatus_F_contig13555:1673..2032Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13555 1674..2032 +
1695995723.7110713-CDS-E-fasciculatus_F_contig13555:1673..20321695995723.7110713-CDS-E-fasciculatus_F_contig13555:1673..2032Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13555 1674..2032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13555.2646.1

>prot_E-fasciculatus_F_contig13555.2646.1 ID=prot_E-fasciculatus_F_contig13555.2646.1|Name=mRNA_E-fasciculatus_F_contig13555.2646.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=159bp
MQSAWLIFFLCLKSIVPAFLLCWCLRCLCRFCIDRHREAELHKDNLFMLR
LLKRLERNSGQETWKARGWLIMIRARRQRSSARPKGWPVRLGKLERYDES
SISNFAYAVHMRDFMGDQTPPEIAPLEAGRLKMNFVQAVMVAVEIHEEGL
FRHIITYL*
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mRNA from alignment at E-fasciculatus_F_contig13555:1127..2527+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13555.2646.1 ID=mRNA_E-fasciculatus_F_contig13555.2646.1|Name=mRNA_E-fasciculatus_F_contig13555.2646.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1401bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13555:1127..2527+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTGCGGCGAAACTCATGCAGTCTGCATGGCTGATTTTCTTCCTTTGTC
TGAAGTCCATTGTACCGGCATTCCTACTCTGCTGGTGTCTACGGTGTCTC
TGCCGTTTCTGCATAGACCGTCACCGAGAAGCTGGTGAGTGCTGTGGAAG
CGGTCGTTGTCACAGGTTCCTCGTAGAGGGCACGGTCATTTTTGTACATA
AAGTGTAAGCTATAGGCAACACCCGGCCCACATTTGGTGCTCGCCCGTTG
GACGTGTGCATAGGTTTCTCTCTTTGAGTTGAACAGGTCATACAATAATG
CCAGCGATTTCTCTTCTGTCCTCTTGTCAATGCTTGAACGCGGTAGGGCT
TACGGCAAGGGCTGCCCTCTGTCAACAAAGTGTCGCAAGGCGAAAACCGG
TGTCCTGCAGTACCTCGAAGGAGTCATGCGAGGAGTACGGCGTAACCTGT
TCTTCGTTTTGCCCTTCTAATCCACAGAAGGTTGTACGCGTCCCTCCAAC
AGCAACAATATCGCTCCCAATGCATCTCCCTCTTTGGCTTGTCGCAGAGC
TGCACAAAGACAATTTATTTATGCTCCGCCTCTTGAAGCGCCTGGAAAGA
AATTCGGGTCAAGAAACTTGGAAGGCGCGGGGCTGGCTGATCATGATACG
GGCGCGTCGCCAACGGTCCTCGGCAAGGCCCAAGGGCTGGCCGGTCAGGT
TGGGGAAGCTCGAACGTTACGACGAGTCCAGCATATCCAATTTTGCTTAT
GCTGTGCATATGAGGGATTTTATGGGCGACCAGACCCCTCCTGAGATAGC
GCCACTGGAGGCGGGAAGGCTCAAGATGAATTTTGTGCAGGCGGTGATGG
TGGCGGTTGAGATTCACGAGGAAGGGTTGTTCCGCCACATCATTACGTAC
CTATGAAGGATGGGGGCGGTAACTACTGTAGGTATCGTGTGGTACGGATG
TTGGACGGGACTGAGAACGTTCTTTGAAAGTGAGGGGCGTCGGCGACGAC
GACACCACCACCACGAACAGCAAAGGACCAGACCAAAAGAGAACCTGGCA
ACTTTAGTAGGAGATGCCTATCCAAACAAGAACTTCGCAACATGTAACAA
GAACGGCTGCTCGGTTTCGGCGATACGTAAGGGCATTTAGTGCGGGCGCG
TACAACTCAGAAAAGGGTTTCTAGGTTACCTTTATGGAACATGTTGCGGT
GTGCGTCATCTATCTGACAGGGCGGTTGGGCGGCGGTGGTTCAACGATAA
AACCATTATATGAAGAGTAGTAGTGTTATGACCGCGGTTAGTGTTAGGAC
CTCGGTCATGCCGTGCCGATATGACAACCTCTGCTTCTCACCGGTGTTGC
GATTTTGTCGCATTCAGTCTCGGTGTGTTGCTGGTTCAACTGAAATCTGG
G
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13555:1127..2527+

>mRNA_E-fasciculatus_F_contig13555.2646.1 ID=mRNA_E-fasciculatus_F_contig13555.2646.1|Name=mRNA_E-fasciculatus_F_contig13555.2646.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=954bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13555:1127..2527+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGTCTGCATGGCTGATTTTCTTCCTTTGTCTGAAGTCCATTGTACC
GGCATTCCTACTCTGCTGGTGTCTACGGTGTCTCTGCCGTTTCTGCATAG
ACCGTCACCGAGAAGCTGATGCAGTCTGCATGGCTGATTTTCTTCCTTTG
TCTGAAGTCCATTGTACCGGCATTCCTACTCTGCTGGTGTCTACGGTGTC
TCTGCCGTTTCTGCATAGACCGTCACCGAGAAGCTGAGCTGCACAAAGAC
AATTTATTTATGCTCCGCCTCTTGAAGCGCCTGGAAAGAAATTCGGGTCA
AGAAACTTGGAAGGCGCGGGGCTGGCTGATCATGATACGGGCGCGTCGCC
AACGGTCCTCGGCAAGGCCCAAGGGCTGGCCGGTCAGGTTGGGGAAGCTC
GAACGTTACGACGAGTCCAGCATATCCAATTTTGCTTATGCTGTGCATAT
GAGGGATTTTATGGGCGACCAGACCCCTCCTGAGATAGCGCCACTGGAGG
CGGGAAGGCTCAAGATGAATTTTGTGCAGGCGGTGATGGTGGCGGTTGAG
ATTCACGAGGAAGGGTTGTTCCGCCACATCATTACGTACCTATGAAGCTG
CACAAAGACAATTTATTTATGCTCCGCCTCTTGAAGCGCCTGGAAAGAAA
TTCGGGTCAAGAAACTTGGAAGGCGCGGGGCTGGCTGATCATGATACGGG
CGCGTCGCCAACGGTCCTCGGCAAGGCCCAAGGGCTGGCCGGTCAGGTTG
GGGAAGCTCGAACGTTACGACGAGTCCAGCATATCCAATTTTGCTTATGC
TGTGCATATGAGGGATTTTATGGGCGACCAGACCCCTCCTGAGATAGCGC
CACTGGAGGCGGGAAGGCTCAAGATGAATTTTGTGCAGGCGGTGATGGTG
GCGGTTGAGATTCACGAGGAAGGGTTGTTCCGCCACATCATTACGTACCT
ATGA
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