mRNA_E-fasciculatus_F_contig13553.2644.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13553.2644.1
Unique NamemRNA_E-fasciculatus_F_contig13553.2644.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: D7FPN8_ECTSI (RecG-like helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN8_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 5.240e-129
Identity = 189/202 (93.56%), Postives = 198/202 (98.02%), Query Frame = 1
Query:    1 DALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDKIDIVVFGGSWLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSPQQE 606
            DALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETS VA+LVEGEVAT+LLKVVKVQSDP +RSP+ITRVHCVDV EDKIDIV+FGGSWLCKNY+PGETKVVSGKVTMDKYSGALVM+SPEVVAPAADLEKVLVIQPTYPLTAGLSG SLRSVIALALDQLEGVTQFPPEWID+ET+REHGWPSLREALSAAHSPQQE
Sbjct:  195 DALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSRVANLVEGEVATLLLKVVKVQSDPRKRSPRITRVHCVDVVEDKIDIVMFGGSWLCKNYEPGETKVVSGKVTMDKYSGALVMNSPEVVAPAADLEKVLVIQPTYPLTAGLSGSSLRSVIALALDQLEGVTQFPPEWIDQETMREHGWPSLREALSAAHSPQQE 396          
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 376 bits (966), Expect = 7.620e-119
Identity = 189/202 (93.56%), Postives = 196/202 (97.03%), Query Frame = 1
Query:    1 DALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDKIDIVVFGGSWLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSPQQE 606
            DALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDP  RSP+ITRVHCVDVAEDKIDIV+FGGSWLCKNY+PGETKVVSGKVTMDKYS +LVM+ PEVVAPAADLEKVLVIQPTYPLTAGLSG SLRSVIALALDQLEGVT FPPEWID+ET+REHGWPSLREALSAAHSPQQE
Sbjct:  125 DALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPRWRSPRITRVHCVDVAEDKIDIVMFGGSWLCKNYEPGETKVVSGKVTMDKYSESLVMTMPEVVAPAADLEKVLVIQPTYPLTAGLSGSSLRSVIALALDQLEGVTHFPPEWIDQETMREHGWPSLREALSAAHSPQQE 326          
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: UPI00167A4736 (ATP-dependent DNA helicase RecG n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI00167A4736)

HSP 1 Score: 137 bits (344), Expect = 7.120e-34
Identity = 79/199 (39.70%), Postives = 114/199 (57.29%), Query Frame = 1
Query:    7 LKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDKIDIVVFG--GSWLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSP 597
            +KGVGPR A+ + K     + DLLWHLP+G+VDRR    + +  EG +AT+ L V++ Q  P RR P   RV C D   D ID+V F   G WL K    GE +VVSG+V  +++ G   M+ P+ V P A+ +++ +++PTYP T GL    L   +  AL++L  +    PEWI    + + GWP   EA+   H+P
Sbjct:   16 IKGVGPRYAKLIEKAAGPQLVDLLWHLPSGVVDRRPAPPIPEAPEGRIATLTLTVLRHQPSPNRRGPY--RVVCTDGHGD-IDLVYFHAKGDWLEKLLPVGERRVVSGRV--ERFQGRAQMAHPDHVVPEAEADQIRIVEPTYPTTEGLPVRILGKAVGGALERLPTL----PEWISPSLVAQRGWPRWDEAIRRVHAP 205          
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: A0A6L7ZYW1_9PROT (DNA helicase (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6L7ZYW1_9PROT)

HSP 1 Score: 128 bits (322), Expect = 1.270e-33
Identity = 79/201 (39.30%), Postives = 111/201 (55.22%), Query Frame = 1
Query:    4 ALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDKIDIVVFGGS--WLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSPQ 600
            AL G+GPR  E +A++    + DLLW LPTG+VDRR    VA+ V GE+AT+ +++   +     + P   RV C D     + +V F     WL K Y  GET+VVSG+V  D++ G   M+ P+    AA  + +  + P YPLT GL+  +++  I  ALD+    TQ  PEW D   I +  WP  REAL  AH P+
Sbjct:   15 ALPGIGPRLKELVARVAGPRIVDLLWTLPTGLVDRRHAPKVAEAVIGEIATITVRIDAHEQPGAPKRPY--RVICSDET-GFLTLVFFHAKQDWLEKTYPVGETRVVSGRV--DEFGGGRQMTHPDFAVSAAQADSIRTVHPVYPLTQGLTRTAMKRAIDGALDRAP--TQ--PEWADAALIAQRQWPDWREALQRAHRPE 206          
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: A0A3M1JVB7_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JVB7_9PROT)

HSP 1 Score: 133 bits (335), Expect = 1.210e-32
Identity = 81/200 (40.50%), Postives = 114/200 (57.00%), Query Frame = 1
Query:    7 LKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLR-RSPKITRVHCVDVAEDKIDIVVFGGS--WLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSP 597
            L GVG R A  LA++G+  V DLLWHLPTGMVDRR +  V D  +G +AT+ ++V +    P R R P   RV C D +   IDIV F  +  ++ +    G  +V+SGKV  + + G + MS P+ +    D +++  ++P YPLTAGLSG  LR  I  ALD    +     EW++       GWP  R A++AAH+P
Sbjct:   16 LPGVGGRTAAHLARMGIARVVDLLWHLPTGMVDRRHSPRVKDAGDGVIATLTVEVARHHPAPPRGRRPY--RVKCFDDS-GTIDIVFFHANRDYIQEMLPEGAVRVISGKV--EHFHGQVQMSHPDYILRPEDRDRIPALEPVYPLTAGLSGKVLRKAITAALDTAPDLQ----EWLEPAHQARQGWPDWRRAITAAHAP 206          
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: A8TKY0_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=alpha proteobacterium BAL199 TaxID=331869 RepID=A8TKY0_9PROT)

HSP 1 Score: 132 bits (333), Expect = 2.270e-32
Identity = 77/200 (38.50%), Postives = 116/200 (58.00%), Query Frame = 1
Query:    7 LKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDKIDIVVFG--GSWLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSPQ 600
            +KGVGPR A+ + K     + DLLWHLP+G+VDRR +  + +  +G VAT+ L V++ Q  P RR P   RV C D   D ID+V F   G WL K    GE +VVSG+  ++++ G   M+ PE V P  + E++ +++PTYP T GL   +LR  +  AL+++  +     EW+    + +  WP   EA+  AH+P+
Sbjct:   16 IKGVGPRYAKLIEKAAGPQIVDLLWHLPSGVVDRRPSPPIPEAPDGRVATLTLTVLRHQPPPGRRGPY--RVVCSDGHAD-IDLVYFHAKGDWLEKLLPVGEVRVVSGR--LERFQGRAQMAHPEHVVPEEEAEEIRIVEPTYPSTEGLPMRTLRRAVEGALERIPTLD----EWMSPSLLAQRAWPRWDEAVRRAHAPE 206          
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: A0A1G7A333_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Rhodospira trueperi TaxID=69960 RepID=A0A1G7A333_9PROT)

HSP 1 Score: 132 bits (331), Expect = 4.300e-32
Identity = 79/206 (38.35%), Postives = 116/206 (56.31%), Query Frame = 1
Query:    4 ALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDK---IDIVVFGGS--WLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSPQQE 606
            +LKGVG R A  + KL    V D+LWHLPTG++DRR    VA+ V G +AT++L V     D  R  P  +R      A D+   + +V F  S  ++ K    GE + VSG++  + Y+    M+ P+ VAP ++L ++  ++P +PLT GL+  +LR V+  AL     V +  PEW+D   +  HGWP+  EAL AAH P+ E
Sbjct:   15 SLKGVGGRVAPLIEKLAGPKVVDVLWHLPTGVIDRRHRPKVAEAVPGRIATLVLTV-----DEHRPPPPASRAPYRIAASDETGTLTLVFFRASRDYMMKLLPIGEQRAVSGRI--EYYNDLPQMAHPDHVAPVSELAEIQTVEPVHPLTQGLTPKTLRKVVESALAAGLKVAEQTPEWLDPSVLERHGWPAWGEALRAAHHPEDE 213          
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: Q2RTL7_RHORT (ATP-dependent DNA helicase RecG n=2 Tax=Rhodospirillum rubrum TaxID=1085 RepID=Q2RTL7_RHORT)

HSP 1 Score: 131 bits (329), Expect = 8.150e-32
Identity = 81/203 (39.90%), Postives = 116/203 (57.14%), Query Frame = 1
Query:    4 ALKGVGPRKAEQLAKL-GVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDKIDIVVFGGS--WLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSPQQ 603
            +LKG G   A  +A+L G   V DLLWHLP+G+VDRR +  +A+  +G V T+ + VV+   +P  RSP   RV C D A   + +V F G   +L      GET+V+SGKV  +++ GA  +  P  V P A+ E V  ++P YPL+ G++G  L  +IA ALD +     +P EWID       GWP   +AL A H+P++
Sbjct:   15 SLKGAGKTMAPLIARLIGGDKVVDLLWHLPSGLVDRRFSPLIAEAPDGVVVTLTV-VVEAHQEPPPRSPSPYRVVCRD-ASGFVTLVFFHGRARYLNDLLPVGETRVISGKV--ERFGGAPQIVHPTHVVPLAEAEAVCRVEPVYPLSGGVAGKVLARLIAQALDDIPDPAAWPDEWIDAPLKAREGWPGWIDALRAVHAPEE 213          
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: UPI001B8C2549 (ATP-dependent DNA helicase RecG n=1 Tax=Magnetospirillum sp. J10 TaxID=611300 RepID=UPI001B8C2549)

HSP 1 Score: 129 bits (325), Expect = 2.780e-31
Identity = 79/203 (38.92%), Postives = 113/203 (55.67%), Query Frame = 1
Query:    7 LKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKIT-RVHCVDVAEDKIDIVVFGG--SWLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSPQQE 606
            L G+GP+ A    +L    V DLLWHLP+G++DRR    +AD   G+VAT+    V++ +     SPK   RV C D     + +V F G   WL +    GE +V+SG V  + ++  + M+ P+ + P AD E+V+ I+P YPLT GL+G  +   + LA++Q   +    PEW D    R  GWPS R+AL A H PQ E
Sbjct:   16 LAGIGPKMAPLYERLAGGRVLDLLWHLPSGVIDRRFAPKLADAPSGKVATL---TVQIDAHIPSNSPKRPYRVRCSDET-GFLHLVFFHGREDWLRRQLPEGEWRVISGVV--EHFNTEIQMTHPDHMVPVADKEQVMSIEPVYPLTGGLTGRMVTKTVRLAVEQAPQL----PEWQDEAWFRRQGWPSWRQALEALHQPQSE 208          
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: A0A7C9KMS4_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C9KMS4_9PROT)

HSP 1 Score: 129 bits (323), Expect = 5.380e-31
Identity = 76/199 (38.19%), Postives = 112/199 (56.28%), Query Frame = 1
Query:    7 LKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDKIDIVVFGG--SWLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSP 597
            L G+GPR A  + +L    V DLLWHLP+G++DRR +  + D   G VAT+ + V K    P RR+P   RV   D    ++D+V F     WL K    GE +VVSG+V +  + G L M+ P+ +A  A+ +K+  I+P +PLT GLS  +L   IA ++     +    PEW+D + +R  GWP  R A++ A +P
Sbjct:   16 LPGIGPRIARLVERLAGAKVVDLLWHLPSGLIDRRFSPTIKDAPAGAVATIAVHVDKHVKPPARRAPY--RVKVSD-GTGRMDLVFFNAHDDWLAKALPVGEDRVVSGRVEL--FRGVLQMTHPDHIATPAERDKLAAIEPVWPLTQGLSPKTLARAIAASVADAPNL----PEWLDPQLVRREGWPPWRTAVAKAQAP 205          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPN8_ECTSI5.240e-12993.56RecG-like helicase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JXY9_9PHAE7.620e-11993.56ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
UPI00167A47367.120e-3439.70ATP-dependent DNA helicase RecG n=1 Tax=Thalassoba... [more]
A0A6L7ZYW1_9PROT1.270e-3339.30DNA helicase (Fragment) n=1 Tax=Rhodospirillaceae ... [more]
A0A3M1JVB7_9PROT1.210e-3240.50ATP-dependent DNA helicase RecG n=1 Tax=Alphaprote... [more]
A8TKY0_9PROT2.270e-3238.50ATP-dependent DNA helicase RecG n=1 Tax=alpha prot... [more]
A0A1G7A333_9PROT4.300e-3238.35ATP-dependent DNA helicase RecG n=1 Tax=Rhodospira... [more]
Q2RTL7_RHORT8.150e-3239.90ATP-dependent DNA helicase RecG n=2 Tax=Rhodospiri... [more]
UPI001B8C25492.780e-3138.92ATP-dependent DNA helicase RecG n=1 Tax=Magnetospi... [more]
A0A7C9KMS4_9PROT5.380e-3138.19ATP-dependent DNA helicase RecG n=1 Tax=Alphaprote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13553contigE-fasciculatus_F_contig13553:2..3585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score132.5
Seed ortholog evalue2.2e-28
Seed eggNOG ortholog331869.BAL199_25314
Preferred namerecG
KEGG koko:K03655
KEGG Pathwayko03440,map03440
GOsGO:0003674,GO:0003678,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009314,GO:0009379,GO:0009628,GO:0009987,GO:0010501,GO:0016020,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051276,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140097,GO:0140098,GO:1901360,GO:1902494
EggNOG free text desc.Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
EggNOG OGs1MWN2@1224,2TR86@28211,4BPUE@82117,COG1200@1,COG1200@2
EC3.6.4.12
COG Functional cat.L
Best tax levelunclassified Alphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-16_001280.1
Exons5
Model size606
Cds size606
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13553.2644.1prot_E-fasciculatus_F_contig13553.2644.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13553 2..3585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927852.6542478-CDS-E-fasciculatus_F_contig13553:1..531622927852.6542478-CDS-E-fasciculatus_F_contig13553:1..53Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13553 2..53 +
1695995723.574124-CDS-E-fasciculatus_F_contig13553:1..531695995723.574124-CDS-E-fasciculatus_F_contig13553:1..53Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13553 2..53 +
1622927852.6707315-CDS-E-fasciculatus_F_contig13553:299..4151622927852.6707315-CDS-E-fasciculatus_F_contig13553:299..415Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13553 300..415 +
1695995723.585971-CDS-E-fasciculatus_F_contig13553:299..4151695995723.585971-CDS-E-fasciculatus_F_contig13553:299..415Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13553 300..415 +
1622927852.6864095-CDS-E-fasciculatus_F_contig13553:1319..14231622927852.6864095-CDS-E-fasciculatus_F_contig13553:1319..1423Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13553 1320..1423 +
1695995723.5972142-CDS-E-fasciculatus_F_contig13553:1319..14231695995723.5972142-CDS-E-fasciculatus_F_contig13553:1319..1423Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13553 1320..1423 +
1622927852.7029626-CDS-E-fasciculatus_F_contig13553:2120..22531622927852.7029626-CDS-E-fasciculatus_F_contig13553:2120..2253Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13553 2121..2253 +
1695995723.606113-CDS-E-fasciculatus_F_contig13553:2120..22531695995723.606113-CDS-E-fasciculatus_F_contig13553:2120..2253Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13553 2121..2253 +
1622927852.7168589-CDS-E-fasciculatus_F_contig13553:3384..35851622927852.7168589-CDS-E-fasciculatus_F_contig13553:3384..3585Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13553 3385..3585 +
1695995723.6149657-CDS-E-fasciculatus_F_contig13553:3384..35851695995723.6149657-CDS-E-fasciculatus_F_contig13553:3384..3585Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13553 3385..3585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13553.2644.1

>prot_E-fasciculatus_F_contig13553.2644.1 ID=prot_E-fasciculatus_F_contig13553.2644.1|Name=mRNA_E-fasciculatus_F_contig13553.2644.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=202bp
DALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEV
ATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDKIDIVVFGGSWLCKNYKP
GETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLS
GPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSPQ
QE
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mRNA from alignment at E-fasciculatus_F_contig13553:2..3585+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13553.2644.1 ID=mRNA_E-fasciculatus_F_contig13553.2644.1|Name=mRNA_E-fasciculatus_F_contig13553.2644.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3584bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13553:2..3585+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATGCCCTGAAGGGAGTCGGGCCGAGGAAGGCCGAACAGCTGGCCAAGCT AGGTAACGTGGGAGGGGGGAGTTGCGGAGTTACTGTAATGTTTGGCGGCG GCGGTCCTGTCGGTCGTCCGTCCGTTGCGTCTGCCCGTACTCGTACCGCG TACAATGTGGAGTCTGCTGCTGCTCCGTTTTCCACTCTGCTGCTCGGGCG CACACCTCTCATTCGGTCCCTTGCGGCAACTATCGCCCACCCGCTACGCA TTGTTTGCTTTGCCCACCTCCGCACGGCCAACGCGCTCGAGCAAACAGGT GTAACGACCGTGGCGGATCTGCTCTGGCACCTTCCCACGGGGATGGTAGA CCGGAGGGAGACGAGCCACGTGGCGGATCTGGTGGAGGGAGAGGTTGCTA CCATGTTGCTCAAGGTGACGCTCGTCCTCTCGTCTGACACTGCACGGGGC CCTTGTTGTTTCTGCTACACCGCATCATCACGCTTACCCCGTCACTTGCC TTTGTTCAGTGTATCCTTTTCGGACTAACAAACACCCTTTGTACCTTTTC GCGACTGGTCGGTCGTTTCGCTGTTGCGTGGCAAGTGGTCAATCGCGTCC ATGGTTTCCATCCGCGTAGATGAAGTGGGGTGGGTACCTGTGGTCGCGGT AGCTGTTGGTCGCTGTTGGCAATTACTGCTTTGTCAAATCGAGCAGGGAT CCCCCCATGGCTTGGGTGCTTGGAACGTGTGTTTGGCAGGTCACCCCCTC CACGCCGTGACATGTCCCAGTCCTCGTTTTCTCCTCCTCGTCTCTTTCGT GTGGTGTGGTCGCTTCGGCACGCATTATTGTCTCGCGCTTTTGTTCCAAG CATTGTCTTCCTTGAACGCGTTATTGTCTCCTGCTAGTCGGCGTGACCGA CCCCGGCTGGTGTGTCCAAATCCTCCCGACAGCTGTTGGCTAGTCCGAGA GCGTCCGGAATACAGGAGACTAGTGCAGCACACACAGGATAATACAGCAG TAGAGGTCCCTGTTCTGTGCCGGTATGTGCTCAGAAAATTCCCCGGCATC ATTCACACCTTACCGGACCGGCATCATTCAAACCTTACCGGACCGGCATC ATTCAAACCTTACCGGACCGGCATCATTCAAAGTCTTTTAGTGTGTGCCC GCCGAAAACACCGACATTATAGTGGGCACCACCGCTTTTCAAACCCCCAT TCTGTAGTTTGTTTTCAGCTGTTCGTTATTTCACTTTTTTTTTCTGGGCT GTTTGCTGTTTTTGTCTTTTTGCGCCCCTTGCTTGGCTGTGGTTTGCAAT GCTTTGCCCCGCGCGCAGGTGGTGAAAGTGCAGAGCGACCCCCTCAGGAG ATCGCCCAAGATCACACGCGTCCATTGCGTTGACGTGGCCGAGGATAAGA TAGACATCGTCGTGTTTGGCGGGTGAGAGCAAGAGAAGAGAAGTGTTTCT GCCCGGCTTACGTTATTAATAGTTTGTTCCATCCGTGCACAGCAGACGAC ACCGGAGTAGAGCTACCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNN NCCCCCGACCCTCCTAGGAGATGGGGTAGTGTGGTTCCTGATGTGTTGTT GGGGTGGCGGTGGGCACCAGGTCAACTCTACCAGAGGTTTTGGGTGGGCG TGGATACGTAGGCGTGTGGGGTGTTTTGTTGATCCCGGTATTGGAGGGAC GATCATGGCCAGACGTAAACACGGGTTGTCTTCTATGACGCCCCTCTCCC AGTCCCTTCCGGCAAACCCCCCCTCACGTAGCCCTCTGTCCATCCTTGCT CGCACACTATTGGTACGGAATGCTCGCGGATTGGCCTCCCAACCGGGCCC ACCTACAGTAACCGGACGCAACGCGATATTGGCCAGAATCTTTACGAACT AATACAGGCAGTGTCGGGTTCGGTTTAAGCGATACCAGGTATCATTTGAG AGCAAAATCGCGTTTAAGTGTGTGTTTCGGCCTATCGCGACCATGAGGAA GTACAACATTATCTGGAGTAAAAGAGAGTGTAGTTCGCTTGTCCCAACCC TCTCTTAGTCTCAACCGCACCCACTGTTATGCTGTACATGCCTCGGCGCC AATCTGAAAACACACGCAGTTCCTGGCTGTGCAAGAACTACAAGCCTGGG GAGACGAAGGTGGTGAGCGGAAAGGTCACCATGGACAAGTACAGCGGAGC CCTGGTGATGTCTTCGCCGGAGGTGGTAGCCCCCGCCGCCGATCTGGAGA AGGTGAGCAAGCAGGGAGGGAGGGAGAAACACCGCCCTCTCGGGATTCAA GCATCACCCATCAACGAGTGCGTCTTTCCAGGGTTGCACACGGGTGTCGA CGAGCTTCAGGAACCGAAAGAAAAGTGTTCATACAACGTCACTTTGGTAG AGAGGAGTATTTATTTCACCCTTTTGCTACTGTTGTGTGTTGTGTGGGGG GGGAGGCCCTCTTGGTATCAGTCACAAAACACCGAACGTCAACTTTGGTA GAGGGGTATTCCACCCTTTGGCTGGTGTGTGTCGAGTCAGGTCTTCTTGG TATCAGCCACAAACCCCGGGTCTTGCTCTGTACTATTATAGTTTGGGATC GGGATGGTGTACTGCTGTTTGAGGCAAAGAAGCTGGGGGCTGTGCAGAAG AATTATCGCCTGTAGCCAGCAGTATACGTGGCGTGTTTGCTACGGTGTCC GCAGGAGGCAGGCCATGGCCACGTCGCTTCTGGTTGTCGAAAAATGGGGT CAGGAACACCAGCGTGAATACGTCGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGTCACCACAAGATGAGTCGAGTCGGGTTGGCGTGGAGGGC TAAGCTTCAGAAAAAAAAAATGGAATCCAAGCTTTACATGTGTTTACATG TGCCAAATGTTGTTGTCCTAGGTGTCAGAATACCTTCTTTTTGGTGCGTG TTCTCTGCTGTTATACCGACAGCCACGTTGCAACATCGCAGAAGTCTGTG GTACCGTGCCACGAATTTATTTATTTTCTGTGCTTACGGTAAAAGGGTCA CTTTTACCCTTCTGCCGGCCCCCGACGCGAGGAATCCCATACCCGATCAT GGAGCCTATTGAGCGGCATTCTTGACTTCCACCCACCCACCGCTTGTTTC GTCTAACCCCTGTACCACCGAACCCTTCCTACTGATTCCTGTCCTTCCCA CGCCGTCGCTGCCGATGATTCACACAACTTCTGGCAAAGTAGGAAGGAAC GATTGGCCATCGGTTATCGGTCCTGCGGGAACAACGCTCCGTCCTCTCGA GGACGCGTCCGTGGTCAATGGTCTAGCAACTACGGCACGAAAAATATGAG TACGCCCCCCCCCCCACTCTCACGTACCCCCAGGTGTTGGTTATCCAGCC CACGTACCCCCTCACCGCCGGCCTGAGCGGCCCCAGCCTCCGCTCGGTTA TCGCCCTGGCCCTCGACCAGCTGGAGGGGGTGACGCAGTTTCCGCCGGAG TGGATAGACCGGGAAACGATACGGGAGCACGGCTGGCCAAGCCTTCGGGA AGCTCTATCCGCCGCCCACAGTCCTCAACAGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13553:2..3585+

>mRNA_E-fasciculatus_F_contig13553.2644.1 ID=mRNA_E-fasciculatus_F_contig13553.2644.1|Name=mRNA_E-fasciculatus_F_contig13553.2644.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1212bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13553:2..3585+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATGCCCTGAAGGGAGTCGGGCCGAGGAAGGCCGAACAGCTGGCCAAGCT
AGGATGCCCTGAAGGGAGTCGGGCCGAGGAAGGCCGAACAGCTGGCCAAG
CTAGGTGTAACGACCGTGGCGGATCTGCTCTGGCACCTTCCCACGGGGAT
GGTAGACCGGAGGGAGACGAGCCACGTGGCGGATCTGGTGGAGGGAGAGG
TTGCTACCATGTTGCTCAAGGTGTAACGACCGTGGCGGATCTGCTCTGGC
ACCTTCCCACGGGGATGGTAGACCGGAGGGAGACGAGCCACGTGGCGGAT
CTGGTGGAGGGAGAGGTTGCTACCATGTTGCTCAAGGTGGTGAAAGTGCA
GAGCGACCCCCTCAGGAGATCGCCCAAGATCACACGCGTCCATTGCGTTG
ACGTGGCCGAGGATAAGATAGACATCGTCGTGTTTGGCGGGTGGTGAAAG
TGCAGAGCGACCCCCTCAGGAGATCGCCCAAGATCACACGCGTCCATTGC
GTTGACGTGGCCGAGGATAAGATAGACATCGTCGTGTTTGGCGGTTCCTG
GCTGTGCAAGAACTACAAGCCTGGGGAGACGAAGGTGGTGAGCGGAAAGG
TCACCATGGACAAGTACAGCGGAGCCCTGGTGATGTCTTCGCCGGAGGTG
GTAGCCCCCGCCGCCGATCTGGAGAAGTTCCTGGCTGTGCAAGAACTACA
AGCCTGGGGAGACGAAGGTGGTGAGCGGAAAGGTCACCATGGACAAGTAC
AGCGGAGCCCTGGTGATGTCTTCGCCGGAGGTGGTAGCCCCCGCCGCCGA
TCTGGAGAAGGTGTTGGTTATCCAGCCCACGTACCCCCTCACCGCCGGCC
TGAGCGGCCCCAGCCTCCGCTCGGTTATCGCCCTGGCCCTCGACCAGCTG
GAGGGGGTGACGCAGTTTCCGCCGGAGTGGATAGACCGGGAAACGATACG
GGAGCACGGCTGGCCAAGCCTTCGGGAAGCTCTATCCGCCGCCCACAGTC
CTCAACAGGAGGTGTTGGTTATCCAGCCCACGTACCCCCTCACCGCCGGC
CTGAGCGGCCCCAGCCTCCGCTCGGTTATCGCCCTGGCCCTCGACCAGCT
GGAGGGGGTGACGCAGTTTCCGCCGGAGTGGATAGACCGGGAAACGATAC
GGGAGCACGGCTGGCCAAGCCTTCGGGAAGCTCTATCCGCCGCCCACAGT
CCTCAACAGGAG
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