mRNA_E-fasciculatus_F_contig13553.2644.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: D7FPN8_ECTSI (RecG-like helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN8_ECTSI) HSP 1 Score: 379 bits (972), Expect = 5.240e-129 Identity = 189/202 (93.56%), Postives = 198/202 (98.02%), Query Frame = 1
Query: 1 DALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDKIDIVVFGGSWLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSPQQE 606
DALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETS VA+LVEGEVAT+LLKVVKVQSDP +RSP+ITRVHCVDV EDKIDIV+FGGSWLCKNY+PGETKVVSGKVTMDKYSGALVM+SPEVVAPAADLEKVLVIQPTYPLTAGLSG SLRSVIALALDQLEGVTQFPPEWID+ET+REHGWPSLREALSAAHSPQQE
Sbjct: 195 DALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSRVANLVEGEVATLLLKVVKVQSDPRKRSPRITRVHCVDVVEDKIDIVMFGGSWLCKNYEPGETKVVSGKVTMDKYSGALVMNSPEVVAPAADLEKVLVIQPTYPLTAGLSGSSLRSVIALALDQLEGVTQFPPEWIDQETMREHGWPSLREALSAAHSPQQE 396
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE) HSP 1 Score: 376 bits (966), Expect = 7.620e-119 Identity = 189/202 (93.56%), Postives = 196/202 (97.03%), Query Frame = 1
Query: 1 DALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDKIDIVVFGGSWLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSPQQE 606
DALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDP RSP+ITRVHCVDVAEDKIDIV+FGGSWLCKNY+PGETKVVSGKVTMDKYS +LVM+ PEVVAPAADLEKVLVIQPTYPLTAGLSG SLRSVIALALDQLEGVT FPPEWID+ET+REHGWPSLREALSAAHSPQQE
Sbjct: 125 DALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPRWRSPRITRVHCVDVAEDKIDIVMFGGSWLCKNYEPGETKVVSGKVTMDKYSESLVMTMPEVVAPAADLEKVLVIQPTYPLTAGLSGSSLRSVIALALDQLEGVTHFPPEWIDQETMREHGWPSLREALSAAHSPQQE 326
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: UPI00167A4736 (ATP-dependent DNA helicase RecG n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI00167A4736) HSP 1 Score: 137 bits (344), Expect = 7.120e-34 Identity = 79/199 (39.70%), Postives = 114/199 (57.29%), Query Frame = 1
Query: 7 LKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDKIDIVVFG--GSWLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSP 597
+KGVGPR A+ + K + DLLWHLP+G+VDRR + + EG +AT+ L V++ Q P RR P RV C D D ID+V F G WL K GE +VVSG+V +++ G M+ P+ V P A+ +++ +++PTYP T GL L + AL++L + PEWI + + GWP EA+ H+P
Sbjct: 16 IKGVGPRYAKLIEKAAGPQLVDLLWHLPSGVVDRRPAPPIPEAPEGRIATLTLTVLRHQPSPNRRGPY--RVVCTDGHGD-IDLVYFHAKGDWLEKLLPVGERRVVSGRV--ERFQGRAQMAHPDHVVPEAEADQIRIVEPTYPTTEGLPVRILGKAVGGALERLPTL----PEWISPSLVAQRGWPRWDEAIRRVHAP 205
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: A0A6L7ZYW1_9PROT (DNA helicase (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6L7ZYW1_9PROT) HSP 1 Score: 128 bits (322), Expect = 1.270e-33 Identity = 79/201 (39.30%), Postives = 111/201 (55.22%), Query Frame = 1
Query: 4 ALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDKIDIVVFGGS--WLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSPQ 600
AL G+GPR E +A++ + DLLW LPTG+VDRR VA+ V GE+AT+ +++ + + P RV C D + +V F WL K Y GET+VVSG+V D++ G M+ P+ AA + + + P YPLT GL+ +++ I ALD+ TQ PEW D I + WP REAL AH P+
Sbjct: 15 ALPGIGPRLKELVARVAGPRIVDLLWTLPTGLVDRRHAPKVAEAVIGEIATITVRIDAHEQPGAPKRPY--RVICSDET-GFLTLVFFHAKQDWLEKTYPVGETRVVSGRV--DEFGGGRQMTHPDFAVSAAQADSIRTVHPVYPLTQGLTRTAMKRAIDGALDRAP--TQ--PEWADAALIAQRQWPDWREALQRAHRPE 206
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: A0A3M1JVB7_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JVB7_9PROT) HSP 1 Score: 133 bits (335), Expect = 1.210e-32 Identity = 81/200 (40.50%), Postives = 114/200 (57.00%), Query Frame = 1
Query: 7 LKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLR-RSPKITRVHCVDVAEDKIDIVVFGGS--WLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSP 597
L GVG R A LA++G+ V DLLWHLPTGMVDRR + V D +G +AT+ ++V + P R R P RV C D + IDIV F + ++ + G +V+SGKV + + G + MS P+ + D +++ ++P YPLTAGLSG LR I ALD + EW++ GWP R A++AAH+P
Sbjct: 16 LPGVGGRTAAHLARMGIARVVDLLWHLPTGMVDRRHSPRVKDAGDGVIATLTVEVARHHPAPPRGRRPY--RVKCFDDS-GTIDIVFFHANRDYIQEMLPEGAVRVISGKV--EHFHGQVQMSHPDYILRPEDRDRIPALEPVYPLTAGLSGKVLRKAITAALDTAPDLQ----EWLEPAHQARQGWPDWRRAITAAHAP 206
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: A8TKY0_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=alpha proteobacterium BAL199 TaxID=331869 RepID=A8TKY0_9PROT) HSP 1 Score: 132 bits (333), Expect = 2.270e-32 Identity = 77/200 (38.50%), Postives = 116/200 (58.00%), Query Frame = 1
Query: 7 LKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDKIDIVVFG--GSWLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSPQ 600
+KGVGPR A+ + K + DLLWHLP+G+VDRR + + + +G VAT+ L V++ Q P RR P RV C D D ID+V F G WL K GE +VVSG+ ++++ G M+ PE V P + E++ +++PTYP T GL +LR + AL+++ + EW+ + + WP EA+ AH+P+
Sbjct: 16 IKGVGPRYAKLIEKAAGPQIVDLLWHLPSGVVDRRPSPPIPEAPDGRVATLTLTVLRHQPPPGRRGPY--RVVCSDGHAD-IDLVYFHAKGDWLEKLLPVGEVRVVSGR--LERFQGRAQMAHPEHVVPEEEAEEIRIVEPTYPSTEGLPMRTLRRAVEGALERIPTLD----EWMSPSLLAQRAWPRWDEAVRRAHAPE 206
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: A0A1G7A333_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Rhodospira trueperi TaxID=69960 RepID=A0A1G7A333_9PROT) HSP 1 Score: 132 bits (331), Expect = 4.300e-32 Identity = 79/206 (38.35%), Postives = 116/206 (56.31%), Query Frame = 1
Query: 4 ALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDK---IDIVVFGGS--WLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSPQQE 606
+LKGVG R A + KL V D+LWHLPTG++DRR VA+ V G +AT++L V D R P +R A D+ + +V F S ++ K GE + VSG++ + Y+ M+ P+ VAP ++L ++ ++P +PLT GL+ +LR V+ AL V + PEW+D + HGWP+ EAL AAH P+ E
Sbjct: 15 SLKGVGGRVAPLIEKLAGPKVVDVLWHLPTGVIDRRHRPKVAEAVPGRIATLVLTV-----DEHRPPPPASRAPYRIAASDETGTLTLVFFRASRDYMMKLLPIGEQRAVSGRI--EYYNDLPQMAHPDHVAPVSELAEIQTVEPVHPLTQGLTPKTLRKVVESALAAGLKVAEQTPEWLDPSVLERHGWPAWGEALRAAHHPEDE 213
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: Q2RTL7_RHORT (ATP-dependent DNA helicase RecG n=2 Tax=Rhodospirillum rubrum TaxID=1085 RepID=Q2RTL7_RHORT) HSP 1 Score: 131 bits (329), Expect = 8.150e-32 Identity = 81/203 (39.90%), Postives = 116/203 (57.14%), Query Frame = 1
Query: 4 ALKGVGPRKAEQLAKL-GVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDKIDIVVFGGS--WLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSPQQ 603
+LKG G A +A+L G V DLLWHLP+G+VDRR + +A+ +G V T+ + VV+ +P RSP RV C D A + +V F G +L GET+V+SGKV +++ GA + P V P A+ E V ++P YPL+ G++G L +IA ALD + +P EWID GWP +AL A H+P++
Sbjct: 15 SLKGAGKTMAPLIARLIGGDKVVDLLWHLPSGLVDRRFSPLIAEAPDGVVVTLTV-VVEAHQEPPPRSPSPYRVVCRD-ASGFVTLVFFHGRARYLNDLLPVGETRVISGKV--ERFGGAPQIVHPTHVVPLAEAEAVCRVEPVYPLSGGVAGKVLARLIAQALDDIPDPAAWPDEWIDAPLKAREGWPGWIDALRAVHAPEE 213
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: UPI001B8C2549 (ATP-dependent DNA helicase RecG n=1 Tax=Magnetospirillum sp. J10 TaxID=611300 RepID=UPI001B8C2549) HSP 1 Score: 129 bits (325), Expect = 2.780e-31 Identity = 79/203 (38.92%), Postives = 113/203 (55.67%), Query Frame = 1
Query: 7 LKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKIT-RVHCVDVAEDKIDIVVFGG--SWLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSPQQE 606
L G+GP+ A +L V DLLWHLP+G++DRR +AD G+VAT+ V++ + SPK RV C D + +V F G WL + GE +V+SG V + ++ + M+ P+ + P AD E+V+ I+P YPLT GL+G + + LA++Q + PEW D R GWPS R+AL A H PQ E
Sbjct: 16 LAGIGPKMAPLYERLAGGRVLDLLWHLPSGVIDRRFAPKLADAPSGKVATL---TVQIDAHIPSNSPKRPYRVRCSDET-GFLHLVFFHGREDWLRRQLPEGEWRVISGVV--EHFNTEIQMTHPDHMVPVADKEQVMSIEPVYPLTGGLTGRMVTKTVRLAVEQAPQL----PEWQDEAWFRRQGWPSWRQALEALHQPQSE 208
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Match: A0A7C9KMS4_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C9KMS4_9PROT) HSP 1 Score: 129 bits (323), Expect = 5.380e-31 Identity = 76/199 (38.19%), Postives = 112/199 (56.28%), Query Frame = 1
Query: 7 LKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQSDPLRRSPKITRVHCVDVAEDKIDIVVFGG--SWLCKNYKPGETKVVSGKVTMDKYSGALVMSSPEVVAPAADLEKVLVIQPTYPLTAGLSGPSLRSVIALALDQLEGVTQFPPEWIDRETIREHGWPSLREALSAAHSP 597
L G+GPR A + +L V DLLWHLP+G++DRR + + D G VAT+ + V K P RR+P RV D ++D+V F WL K GE +VVSG+V + + G L M+ P+ +A A+ +K+ I+P +PLT GLS +L IA ++ + PEW+D + +R GWP R A++ A +P
Sbjct: 16 LPGIGPRIARLVERLAGAKVVDLLWHLPSGLIDRRFSPTIKDAPAGAVATIAVHVDKHVKPPARRAPY--RVKVSD-GTGRMDLVFFNAHDDWLAKALPVGEDRVVSGRVEL--FRGVLQMTHPDHIATPAERDKLAAIEPVWPLTQGLSPKTLARAIAASVADAPNL----PEWLDPQLVRREGWPPWRTAVAKAQAP 205 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13553.2644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13553.2644.1 >prot_E-fasciculatus_F_contig13553.2644.1 ID=prot_E-fasciculatus_F_contig13553.2644.1|Name=mRNA_E-fasciculatus_F_contig13553.2644.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=202bp DALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVback to top mRNA from alignment at E-fasciculatus_F_contig13553:2..3585+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13553.2644.1 ID=mRNA_E-fasciculatus_F_contig13553.2644.1|Name=mRNA_E-fasciculatus_F_contig13553.2644.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3584bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13553:2..3585+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13553:2..3585+ >mRNA_E-fasciculatus_F_contig13553.2644.1 ID=mRNA_E-fasciculatus_F_contig13553.2644.1|Name=mRNA_E-fasciculatus_F_contig13553.2644.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1212bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13553:2..3585+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |