mRNA_E-fasciculatus_F_contig13548.2638.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13548.2638.1
Unique NamemRNA_E-fasciculatus_F_contig13548.2638.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13548.2638.1 vs. uniprot
Match: D7G1K5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K5_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 6.260e-53
Identity = 128/176 (72.73%), Postives = 135/176 (76.70%), Query Frame = 1 
Query:  220 MGAVMVDDPAVILFAGGIGRGGMVVDSNVDVFAVPLDVADXXXXXXXXXXXXXXXXXXREEAMVDRNVLSLGVARTDMGAGGTRSALFFAGGCGMEDSGDDNEQETHSSGPTIVQDGGXXGD-GVAVDVPPGGDPDVPLLLKNCQATDAVDVFLLGGGVTGRKKEKGSCRFFLQTP 744
            MGAVMVDDPAVILFAGGIGRGGMVVDSNVDVFAVPLDV + XXXXXXXXXXXXXXXXX EE +VDR+VLSLGVARTDMGAGGT SA+FFAGGCGMED GD                  XX   GVAVDVPPG DPDVPLLLKNCQATDAVDVF LG G  G   ++G  +  L  P
Sbjct:    1 MGAVMVDDPAVILFAGGIGRGGMVVDSNVDVFAVPLDVDEDXXXXXXXXXXXXXXXXXXEETLVDRDVLSLGVARTDMGAGGTSSAMFFAGGCGMEDVGDXXXXXXXXXXXXXXXXXXXXXXXGVAVDVPPGADPDVPLLLKNCQATDAVDVFFLGSGGGGDGAQEGKGKLSLLPP 176
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BLAST of mRNA_E-fasciculatus_F_contig13548.2638.1 vs. uniprot
Match: A0A6H5KCH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCH0_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 2.700e-44
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 3 
Query:  699 AQERKGKLSLLPPDAVRLCEPKYAATVGVFFTGSPEEGDPSAWAPTAHVLVAGGIIPTGGGEGGGQYTATSTVDIFRDDGIDGATGE 959
            AQE KGKLSLLPPDAVRLCEPKYAATVGVFFTGSP+EGDPSAWAPTAHVLVAGGI+PTGGGEGGGQYTATSTVDIFR DGID ATGE
Sbjct:   89 AQEGKGKLSLLPPDAVRLCEPKYAATVGVFFTGSPDEGDPSAWAPTAHVLVAGGIVPTGGGEGGGQYTATSTVDIFRHDGIDEATGE 175
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BLAST of mRNA_E-fasciculatus_F_contig13548.2638.1 vs. uniprot
Match: A0A6H5KDG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDG8_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.410e-24
Identity = 58/80 (72.50%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:    2 DAFVLWSRVLQQC*CCWFGLTC*ALPLPPTTTPLPLLQRKHAAVDSSFEMARHPLRTAARPREGCCCLEGEGSWAPS-WS 238
            D F L SRVLQQC     G TC ALPL PTT PL LLQR HAA DSSFEMAR  LRTA R R+GCCCLEGE SWAPS WS
Sbjct:    3 DVFALSSRVLQQC-XXXXGSTCSALPLRPTTAPLSLLQRSHAAEDSSFEMARRLLRTA-RQRKGCCCLEGEDSWAPSSWS 80
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BLAST of mRNA_E-fasciculatus_F_contig13548.2638.1 vs. uniprot
Match: A0A835ZD19_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD19_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.110e-12
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 3 
Query:  720 LSLLPPDAVRLCEPKYAATVGVFFTGSPEEGDPSAWAPTAHVLVAGGIIPTGGGEGGGQYTATSTVDIFRDDGI 941
            L +       LCEPKYAAT GVF+TG P++G    WA T HV+VAGGI+  G G     Y AT T+DI R++G+
Sbjct:  147 LPMQSTQGFHLCEPKYAATTGVFWTGEPDQGMGGPWAQTPHVVVAGGIVSVGEG----MYRATDTIDILREEGV 216
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13548.2638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G1K5_ECTSI6.260e-5372.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCH0_9PHAE2.700e-4494.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDG8_9PHAE1.410e-2472.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZD19_9STRA1.110e-1250.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13548contigE-fasciculatus_F_contig13548:2..3266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionKelch-type beta propeller
Ec32 orthologEc-07_001360.1
Exons3
Model size959
Cds size705
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13548.2638.1prot_E-fasciculatus_F_contig13548.2638.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13548 44..2468 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927851.880147-UTR-E-fasciculatus_F_contig13548:1..431622927851.880147-UTR-E-fasciculatus_F_contig13548:1..43Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13548 2..43 +
1695995723.1806965-UTR-E-fasciculatus_F_contig13548:1..431695995723.1806965-UTR-E-fasciculatus_F_contig13548:1..43Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13548 2..43 +
1622927851.9203207-UTR-E-fasciculatus_F_contig13548:2468..24691622927851.9203207-UTR-E-fasciculatus_F_contig13548:2468..2469Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13548 2469..2469 +
1695995723.2111087-UTR-E-fasciculatus_F_contig13548:2468..24691695995723.2111087-UTR-E-fasciculatus_F_contig13548:2468..2469Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13548 2469..2469 +
1622927851.935197-UTR-E-fasciculatus_F_contig13548:3055..32661622927851.935197-UTR-E-fasciculatus_F_contig13548:3055..3266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13548 3056..3266 +
1695995723.2244866-UTR-E-fasciculatus_F_contig13548:3055..32661695995723.2244866-UTR-E-fasciculatus_F_contig13548:3055..3266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13548 3056..3266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927851.8954854-CDS-E-fasciculatus_F_contig13548:43..4291622927851.8954854-CDS-E-fasciculatus_F_contig13548:43..429Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13548 44..429 +
1695995723.191083-CDS-E-fasciculatus_F_contig13548:43..4291695995723.191083-CDS-E-fasciculatus_F_contig13548:43..429Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13548 44..429 +
1622927851.9087594-CDS-E-fasciculatus_F_contig13548:2149..24681622927851.9087594-CDS-E-fasciculatus_F_contig13548:2149..2468Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13548 2150..2468 +
1695995723.2010884-CDS-E-fasciculatus_F_contig13548:2149..24681695995723.2010884-CDS-E-fasciculatus_F_contig13548:2149..2468Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13548 2150..2468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13548.2638.1

>prot_E-fasciculatus_F_contig13548.2638.1 ID=prot_E-fasciculatus_F_contig13548.2638.1|Name=mRNA_E-fasciculatus_F_contig13548.2638.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=235bp
MLLVWIDLLSLAVAADHHAVAASSTKACGRRFLVRDGEASTPDSSPAAGG
LLLSRGRGFMGAVMVDDPAVILFAGGIGRGGMVVDSNVDVFAVPLDVADD
DDDDEDNATGGAAVGGGREEAMVDRNVLSLGVARTDMGAGGTRSALFFAG
GCGMEDSGDDNEQETHSSGPTIVQDGGGGGDGVAVDVPPGGDPDVPLLLK
NCQATDAVDVFLLGGGVTGRKKEKGSCRFFLQTP*
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mRNA from alignment at E-fasciculatus_F_contig13548:2..3266+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13548.2638.1 ID=mRNA_E-fasciculatus_F_contig13548.2638.1|Name=mRNA_E-fasciculatus_F_contig13548.2638.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3265bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13548:2..3266+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGATGCCTTCGTCCTTTGGTCCCGGGTGCTGCAGCAGTGCTGATGCTGCT
GGTTTGGATTGACCTGCTGAGCCTTGCCGTTGCCGCCGACCACCACGCCG
TTGCCGCTTCTTCAACGAAAGCATGCGGCCGTAGATTCCTCGTTCGAGAT
GGCGAGGCATCCACTCCGGACAGCAGCCCGGCCGCGGGAGGGCTGCTGCT
GTCTCGAGGGAGAGGGTTCATGGGCGCCGTCATGGTCGACGATCCAGCGG
TGATCTTGTTCGCAGGCGGCATCGGGAGGGGAGGAATGGTTGTCGATTCA
AACGTTGATGTTTTCGCGGTGCCGCTGGACGTTGCTGATGATGATGACGA
CGACGAGGACAACGCCACTGGCGGTGCTGCTGTCGGGGGTGGACGCGAAG
AAGCAATGGTGGACAGGAACGTTCTCTCGTGAGTGTCTCGTCAGCAGGCT
TCTTCTCTTCTTCTCGAGAAGTGATTAGAGATCACCCGCGTGCATTCATG
ATTTTGGTCTGCCGTACGAAATAGATACGTTTGCTGGCTCACGGCTCCAC
GACGATGAATCGATCGGGCTGGCCTGTCTGCTGTGTGTAGTTGGTGTGCA
TGTGTGCATACATAAACACACACACTCTCGGCTATTTTTGTGCCGAGAAA
ATGCGCGACGGGCTTCGAAATTTCAACCATGGGAGTCGGGTTTGTGTTCC
GCAACCTCTTCAACTCCTTTGTTGACCAATACCACGCTACAACATTTCAT
GGCGCGTCACACAGATCGCCGCAACCCATCCAGCAAAGCAGTCGGTGCGG
CCGAATGTGCGGGCGTGCCCCATGTATGGATATCTGTGCTACAGTAGTGT
CTACGAATTATGTAGACGAGAGTGCTATACCAACAAGCCGAGATGGTGAT
GAAAAAGAGCAGTGTTGCTCCCAAAATGATGTCGCCGCCAAGGTGGTGGT
TGCTACTGCTGTACAACAGCAACTACAGCAGTAGTGCGCCGCGTGTGTTG
TGTGCTCTGCATGGAACGCGTTGGTTGATCCCGACCTGATAAAGAAGTAG
CGTTGACTCTACCGCGCAGAATCTATGTACATGAGTCTTTGTTTGGTGCT
ATGCATATGCATATGCATATTTACTGTATCTACCATGACTGCTGTATATA
GGAACGGCTGCAGACTAGACTTCAAGACTCTGAACATTTTCGCGGCCAAG
AGACGAGATGCAACATGACACACCGCACCTGACCCCCCCCCTATCCAAAC
CCTCATTCAAACGTGTCCATGATGTGTCCATACACATCTGGAATGGAATA
GTGTTTGATTTTGAGGGGAACTTCTTCCATGAAAGGTCGCCACGACATTC
GGTTCGAAAGGTCAACATAAACAAGTATCACGCCAATGCATGACAACAAC
AACAATCAGACCAGACTCTACAAGTAACCAGGTAGGGCAAGCACGTACGA
CGTACAAATGCTTCGGTGTCTGTGCTGCATCTTGTGTCTTCCCTGCACGT
ATTTCCATGATACGCACGATGACACCAAGCACATACTGTAGGTGACATAT
GCATAGGACACCGCACACCCTGGACCGGTTGTCAACGCTCGATTGCCCCA
CGGCGAAGAGGATGCCAAAATCAAAACGCGCGTTGTCGGAAAGCTCCCTC
TTTTTCTATTTCTCGACGAGACAGACCGTTCCAACGCTGCCATTTCTCGG
CACCTTCACTGATTGTGTGCATGTTCGCTGCAGAGTTGTCGAGCTTCGAA
ATCGGTGCACGGGGTGTGGTATCTTGTGCAATCTGGCGGTATCGCGCCAT
GGTATGCTACTGCCGATGTACTGCTTGAGGTTGAAACAAACGCAGGTGGG
TAGCACAGAGAAATATTACACCGCCACCACCACGATGCCGCGAAAACTTG
TGCATTTTTACGTTGGCATGGAGTCTCAATCATTGCTGGGAGGACCCTCT
GTGGGAATCAACAACGCCGAGAAAACTCTCTGCAGCTCACGACTGCATTG
ATGACGCCCCCGGTGGATTCTTTTCTCTCTATCTCTCTATCTCTCTCGCC
AAAATGAGCCCCCCCCCCAAGAAAAGTGTCCCGTGCCTCCGCCCGTGCCA
ACCTTCCACCTTCTTTCGCCCAATAACCGCAACGCAACAACCGGCAAGGC
TTGGGGTCGCCAGAACGGACATGGGAGCGGGGGGAACAAGGAGTGCGTTA
TTCTTTGCAGGGGGTTGCGGCATGGAGGACAGCGGAGACGACAACGAACA
AGAGACCCACAGCTCCGGACCTACAATCGTCCAAGATGGTGGTGGGGGGG
GGGACGGGGTCGCCGTTGACGTGCCCCCCGGGGGGGACCCCGATGTGCCC
TTGCTGCTGAAGAACTGTCAGGCCACGGACGCGGTGGATGTGTTTTTGTT
GGGGGGGGGGGTGACGGGGCGCAAGAAAGAAAAGGGAAGCTGTCGCTTCT
TCCTCCAGACGCCGTGAGGTGGGTGCCGCTGCGCGGCTATCCGCGCTCGT
GTAGGCCACGTTTAGAGCCCTGAGAAGAGGTTTATCTAGTTCGCCCCTTT
TTCTACCTTGCTATGCGTGTTTTTTTGCGCGTGTGTGTGCGTAGTCTGTG
TATTGTAATTGAGTTATCGGTTTTGGATAGGGCACGCCGTGTCTTGCTGC
GCCGTATGAAGACTCCCGTGTTTTGATGTCCACGGCATGACGTGAGGCTT
CATTTCGTGTGTGTGCCGCAATTTTTGTGTTAGTTTCAGGTTATAGACAG
GAGGGGGATGAAACGGAGGGGAATGGATTATTGTTGTTGATGCGGTTGCT
GCTGCTGATGCGGTTGTTGCTACTGCTGTTGTTGTTGCTGTTAATGCTGC
TGCTGATGCGGTTGTTGCTGCTGCTGCTGCTGTTGTTGTTGTTGTTATTG
CTGCTGCTGATGCGGTTGTTGTTGCTGCTGCTGATGCGGTTCTTGTCGCT
GCTGCTGTTGTCTCAACGTCTCAACATTATGAACCGGTCTCTGCTCAACA
TCCGAACCCGGTTCCAACTAACGCGGATGTCTTCTTTTCGTGGCCAACAC
ACAGGCTGTGCGAGCCCAAGTACGCCGCCACGGTGGGCGTGTTTTTCACG
GGGTCCCCGGAAGAGGGCGACCCTTCGGCCTGGGCGCCGACGGCGCACGT
CCTCGTGGCCGGAGGCATTATCCCCACGGGGGGCGGGGAAGGGGGAGGCC
AGTACACGGCCACTTCCACGGTAGACATCTTTAGGGATGATGGGATCGAC
GGGGCCACCGGCGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13548:2..3266+

>mRNA_E-fasciculatus_F_contig13548.2638.1 ID=mRNA_E-fasciculatus_F_contig13548.2638.1|Name=mRNA_E-fasciculatus_F_contig13548.2638.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1410bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13548:2..3266+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCTGGTTTGGATTGACCTGCTGAGCCTTGCCGTTGCCGCCGACCA
CCACGCCGTTGCCGCTTCTTCAACGAAAGCATGCGGCCGTAGATTCCTCG
TTCGAGATGGCGAGGCATCCACTCCGGACAGCAGCCCGGCCGCGGGAGGG
CTGCTGCTGTCTCGAGGGAGAGGGTTCATGGGCGCCGTCATGGTCGACGA
TCCAGCGGTGATCTTGTTCGCAGGCGGCATCGGGAGGGGAGGAATGGTTG
TCGATTCAAACGTTGATGTTTTCGCGGTGCCGCTGGACGTTGCTGATGAT
GATGACGACGACGAGGACAACGCCACTGGCGGTGCTGCTGTCGGGGGTGG
ACGCGAAGAAGCAATGGTGGACAGGAACGTTCTCTCATGCTGCTGGTTTG
GATTGACCTGCTGAGCCTTGCCGTTGCCGCCGACCACCACGCCGTTGCCG
CTTCTTCAACGAAAGCATGCGGCCGTAGATTCCTCGTTCGAGATGGCGAG
GCATCCACTCCGGACAGCAGCCCGGCCGCGGGAGGGCTGCTGCTGTCTCG
AGGGAGAGGGTTCATGGGCGCCGTCATGGTCGACGATCCAGCGGTGATCT
TGTTCGCAGGCGGCATCGGGAGGGGAGGAATGGTTGTCGATTCAAACGTT
GATGTTTTCGCGGTGCCGCTGGACGTTGCTGATGATGATGACGACGACGA
GGACAACGCCACTGGCGGTGCTGCTGTCGGGGGTGGACGCGAAGAAGCAA
TGGTGGACAGGAACGTTCTCTCGCTTGGGGTCGCCAGAACGGACATGGGA
GCGGGGGGAACAAGGAGTGCGTTATTCTTTGCAGGGGGTTGCGGCATGGA
GGACAGCGGAGACGACAACGAACAAGAGACCCACAGCTCCGGACCTACAA
TCGTCCAAGATGGTGGTGGGGGGGGGGACGGGGTCGCCGTTGACGTGCCC
CCCGGGGGGGACCCCGATGTGCCCTTGCTGCTGAAGAACTGTCAGGCCAC
GGACGCGGTGGATGTGTTTTTGTTGGGGGGGGGGGTGACGGGGCGCAAGA
AAGAAAAGGGAAGCTGTCGCTTCTTCCTCCAGACGCCGTGAGCTTGGGGT
CGCCAGAACGGACATGGGAGCGGGGGGAACAAGGAGTGCGTTATTCTTTG
CAGGGGGTTGCGGCATGGAGGACAGCGGAGACGACAACGAACAAGAGACC
CACAGCTCCGGACCTACAATCGTCCAAGATGGTGGTGGGGGGGGGGACGG
GGTCGCCGTTGACGTGCCCCCCGGGGGGGACCCCGATGTGCCCTTGCTGC
TGAAGAACTGTCAGGCCACGGACGCGGTGGATGTGTTTTTGTTGGGGGGG
GGGGTGACGGGGCGCAAGAAAGAAAAGGGAAGCTGTCGCTTCTTCCTCCA
GACGCCGTGA
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