mRNA_E-fasciculatus_F_contig13543.2636.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13543.2636.1 vs. uniprot
Match: D8LSG6_ECTSI (Glutamine synthetase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSG6_ECTSI) HSP 1 Score: 331 bits (848), Expect = 2.480e-111 Identity = 156/159 (98.11%), Postives = 159/159 (100.00%), Query Frame = 1
Query: 1 QVGPAVGINGADDLVMSRFLLQRVAEDLQVAVSLDPKPIPGDWNGAGCHTNFSTEKMRQDGGYKEIVEAVEKLGKRHKQHIDAYGEGNERRLTGLHETANMNTFKYGVADRGASIRIPRAAEAEQKGYFEDRRPSSNMDPYVVCGMIFDTTCVWDGKDE 477
QVGPAVGINGADDLVMSRFLLQRVAEDLQVAVSLDPKPIPGDWNGAGCHTNFSTEKMRQ+GG+KEIVEAVEKLGKRHKQHI+AYGEGNERRLTGLHETANMNTFKYGVADRGASIRIPRAAEAEQKGYFEDRRPSSNMDPYVVCGMIFDTTCVWDGKDE
Sbjct: 249 QVGPAVGINGADDLVMSRFLLQRVAEDLQVAVSLDPKPIPGDWNGAGCHTNFSTEKMRQEGGFKEIVEAVEKLGKRHKQHIEAYGEGNERRLTGLHETANMNTFKYGVADRGASIRIPRAAEAEQKGYFEDRRPSSNMDPYVVCGMIFDTTCVWDGKDE 407
BLAST of mRNA_E-fasciculatus_F_contig13543.2636.1 vs. uniprot
Match: A0A835YJ88_9STRA (Glutamine synthetase n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ88_9STRA) HSP 1 Score: 234 bits (596), Expect = 9.290e-74 Identity = 111/151 (73.51%), Postives = 124/151 (82.12%), Query Frame = 1
Query: 1 QVGPAVGINGADDLVMSRFLLQRVAEDLQVAVSLDPKPIPGDWNGAGCHTNFSTEKMRQDGGYKEIVEAVEKLGKRHKQHIDAYGEGNERRLTGLHETANMNTFKYGVADRGASIRIPRAAEAEQKGYFEDRRPSSNMDPYVVCGMIFDTT 453
QVGP VGI DDL +SR+LLQRV E V VSLDPKPIPGDWNGAGCHTN+STE MR GGY +I+EA+EKLGK+H+QHI AYGEGNERRLTG HETA+++ F YGVA+RGASIRI R E E GYFEDRRP+SNMDPYVV GMI TT
Sbjct: 211 QVGPCVGITAGDDLWVSRYLLQRVCELFGVIVSLDPKPIPGDWNGAGCHTNYSTEPMRNPGGYAKIIEAIEKLGKKHEQHIKAYGEGNERRLTGRHETASISQFSYGVANRGASIRIGRQVEEEGCGYFEDRRPASNMDPYVVTGMIIQTT 361
BLAST of mRNA_E-fasciculatus_F_contig13543.2636.1 vs. uniprot
Match: D0NNT6_PHYIT (Glutamine synthetase n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NNT6_PHYIT) HSP 1 Score: 229 bits (583), Expect = 1.330e-73 Identity = 107/151 (70.86%), Postives = 123/151 (81.46%), Query Frame = 1
Query: 1 QVGPAVGINGADDLVMSRFLLQRVAEDLQVAVSLDPKPIPGDWNGAGCHTNFSTEKMRQDGGYKEIVEAVEKLGKRHKQHIDAYGEGNERRLTGLHETANMNTFKYGVADRGASIRIPRAAEAEQKGYFEDRRPSSNMDPYVVCGMIFDTT 453
QVGP GI D L MSR++L RV ED V VS DPKPIPGDWNGAGCHTN+ST+ MR++GG +I+EA+EK+ +HK+HI AYG GNERRLTG HETA+M+TF YGVA+RGASIRIPR AEAE KGYFEDRRP+SNMDPYVV G I TT
Sbjct: 73 QVGPCTGIESGDHLWMSRYILLRVCEDFGVNVSWDPKPIPGDWNGAGCHTNYSTKAMREEGGMAKIIEAIEKMKLKHKEHIAAYGTGNERRLTGRHETASMDTFSYGVANRGASIRIPRVAEAEGKGYFEDRRPASNMDPYVVTGRIIKTT 223
BLAST of mRNA_E-fasciculatus_F_contig13543.2636.1 vs. uniprot
Match: A0A804R9F9_MAIZE (Glutamine synthetase n=3 Tax=Zea mays TaxID=4577 RepID=A0A804R9F9_MAIZE) HSP 1 Score: 233 bits (593), Expect = 3.220e-73 Identity = 105/157 (66.88%), Postives = 131/157 (83.44%), Query Frame = 1
Query: 1 QVGPAVGINGADDLVMSRFLLQRVAEDLQVAVSLDPKPIPGDWNGAGCHTNFSTEKMRQDGGYKEIVEAVEKLGKRHKQHIDAYGEGNERRLTGLHETANMNTFKYGVADRGASIRIPRAAEAEQKGYFEDRRPSSNMDPYVVCGMIFDTTCVWDGK 471
QVGP+VGI+ D++ ++R++L+R+ E + +SLDPKPI GDWNGAG HTN+ST+ MR+ GGY+ I EA+EKLGKRH++HI AYGEGNERRLTG HETA++NTFK+GVA+RGASIR+ R E E KGYFEDRRP+SNMDPYVV GMI DTT +W G
Sbjct: 215 QVGPSVGISAGDEIWVARYILERITEMAGIVLSLDPKPIKGDWNGAGAHTNYSTKSMREAGGYEVIKEAIEKLGKRHREHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIADTTILWKGN 371
BLAST of mRNA_E-fasciculatus_F_contig13543.2636.1 vs. uniprot
Match: D7FPA6_ECTSI (Glutamine synthetase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7FPA6_ECTSI) HSP 1 Score: 232 bits (592), Expect = 3.630e-73 Identity = 108/147 (73.47%), Postives = 124/147 (84.35%), Query Frame = 1
Query: 1 QVGPAVGINGADDLVMSRFLLQRVAEDLQVAVSLDPKPIPGDWNGAGCHTNFSTEKMRQDGGYKEIVEAVEKLGKRHKQHIDAYGEGNERRLTGLHETANMNTFKYGVADRGASIRIPRAAEAEQKGYFEDRRPSSNMDPYVVCGMI 441
QVGP GI D+L +SR+LLQRV E V VSLDPKPIPGDWNGAGCHTN+ST+ MR++GGYK+I+ A+EKLG++H +HI AYGEGNERRLTG HETA+M+ F YGVA+RGASIRI R E EQKGYFEDRRPSSNMDPYVV GMI
Sbjct: 211 QVGPCEGIASGDELWISRYLLQRVCEQFGVIVSLDPKPIPGDWNGAGCHTNYSTKPMREEGGYKDIIAAIEKLGEKHDEHIAAYGEGNERRLTGKHETASMDKFSYGVANRGASIRIGRDVEKEQKGYFEDRRPSSNMDPYVVTGMI 357
BLAST of mRNA_E-fasciculatus_F_contig13543.2636.1 vs. uniprot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 n=10 Tax=Panicoideae TaxID=147369 RepID=GLNA5_MAIZE) HSP 1 Score: 231 bits (590), Expect = 6.110e-73 Identity = 104/157 (66.24%), Postives = 131/157 (83.44%), Query Frame = 1
Query: 1 QVGPAVGINGADDLVMSRFLLQRVAEDLQVAVSLDPKPIPGDWNGAGCHTNFSTEKMRQDGGYKEIVEAVEKLGKRHKQHIDAYGEGNERRLTGLHETANMNTFKYGVADRGASIRIPRAAEAEQKGYFEDRRPSSNMDPYVVCGMIFDTTCVWDGK 471
QVGP+VGI+ D++ ++R++L+R+ E + +SLDPKPI GDWNGAG HTN+ST+ MR+ GGY+ I EA+EKLG+RH++HI AYGEGNERRLTG HETA++NTFK+GVA+RGASIR+ R E E KGYFEDRRP+SNMDPYVV GMI DTT +W G
Sbjct: 201 QVGPSVGISAGDEIWVARYILERITEMAGIVLSLDPKPIKGDWNGAGAHTNYSTKSMREAGGYEVIKEAIEKLGRRHREHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIADTTILWKGN 357
BLAST of mRNA_E-fasciculatus_F_contig13543.2636.1 vs. uniprot
Match: Q42874_SOLLC (Glutamine synthetase (Fragment) n=2 Tax=cellular organisms TaxID=131567 RepID=Q42874_SOLLC) HSP 1 Score: 224 bits (572), Expect = 1.030e-72 Identity = 101/153 (66.01%), Postives = 129/153 (84.31%), Query Frame = 1
Query: 1 QVGPAVGINGADDLVMSRFLLQRVAEDLQVAVSLDPKPIPGDWNGAGCHTNFSTEKMRQDGGYKEIVEAVEKLGKRHKQHIDAYGEGNERRLTGLHETANMNTFKYGVADRGASIRIPRAAEAEQKGYFEDRRPSSNMDPYVVCGMIFDTTCV 459
QVGP+VGI+ D++ ++R++L+R+AE V VS DPKPIPGDWNGAG HTN+ST+ MR+DGGY+ I++A+EKLG +HK+HI AYGEGNERRL+G HETAN+NTFK+GVA+RGAS+R+ R E KGYFEDRRP+SNMDPYVV MI +TT +
Sbjct: 20 QVGPSVGISAGDEVWVARYILERIAEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEIILKAIEKLGLKHKEHIAAYGEGNERRLSGKHETANINTFKWGVANRGASVRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTII 172
BLAST of mRNA_E-fasciculatus_F_contig13543.2636.1 vs. uniprot
Match: UPI000C6FB481 (glutamine synthetase-like n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=UPI000C6FB481) HSP 1 Score: 226 bits (577), Expect = 1.080e-72 Identity = 109/159 (68.55%), Postives = 125/159 (78.62%), Query Frame = 1
Query: 1 QVGPAVGINGADDLVMSRFLLQRVAEDLQVAVSLDPKPIPGDWNGAGCHTNFSTEKMRQDGGYKEIVEAVEKLGKRHKQHIDAYGEGNERRLTGLHETANMNTFKYGVADRGASIRIPRAAEAEQKGYFEDRRPSSNMDPYVVCGMIFDTTCVWDGKDE 477
QVGP VGI AD+L++SR++LQRV ED V + DPKPI GDWNGAGCHTNFSTEKMR+ GG I A+ +LG RH HI AYGEGNERRLTG HETA+MNTF YGVA+RG SIRIPR+ EA+ GY EDRRPSSNMDPYVV MIF+T + DG +E
Sbjct: 61 QVGPCVGIAAADELMVSRYILQRVCEDFGVYCTFDPKPIDGDWNGAGCHTNFSTEKMRKAGGRAAIDTAIRQLGARHSAHIAAYGEGNERRLTGKHETADMNTFSYGVANRGCSIRIPRSVEADGCGYLEDRRPSSNMDPYVVTSMIFET--IADGNEE 217
BLAST of mRNA_E-fasciculatus_F_contig13543.2636.1 vs. uniprot
Match: D0NNT7_PHYIT (Glutamine synthetase n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NNT7_PHYIT) HSP 1 Score: 229 bits (583), Expect = 3.260e-72 Identity = 107/151 (70.86%), Postives = 123/151 (81.46%), Query Frame = 1
Query: 1 QVGPAVGINGADDLVMSRFLLQRVAEDLQVAVSLDPKPIPGDWNGAGCHTNFSTEKMRQDGGYKEIVEAVEKLGKRHKQHIDAYGEGNERRLTGLHETANMNTFKYGVADRGASIRIPRAAEAEQKGYFEDRRPSSNMDPYVVCGMIFDTT 453
QVGP GI D L MSR++L RV ED V VS DPKPIPGDWNGAGCHTN+ST+ MR++GG +I+EA+EK+ +HK+HI AYG GNERRLTG HETA+M+TF YGVA+RGASIRIPR AEAE KGYFEDRRP+SNMDPYVV G I TT
Sbjct: 176 QVGPCTGIESGDHLWMSRYILLRVCEDFGVNVSWDPKPIPGDWNGAGCHTNYSTKAMREEGGMAKIIEAIEKMKLKHKEHIAAYGTGNERRLTGRHETASMDTFSYGVANRGASIRIPRVAEAEGKGYFEDRRPASNMDPYVVTGRIIKTT 326
BLAST of mRNA_E-fasciculatus_F_contig13543.2636.1 vs. uniprot
Match: A0A833VBI2_9POAL (Glutamine synthetase n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A833VBI2_9POAL) HSP 1 Score: 229 bits (585), Expect = 3.480e-72 Identity = 105/154 (68.18%), Postives = 129/154 (83.77%), Query Frame = 1
Query: 1 QVGPAVGINGADDLVMSRFLLQRVAEDLQVAVSLDPKPIPGDWNGAGCHTNFSTEKMRQDGGYKEIVEAVEKLGKRHKQHIDAYGEGNERRLTGLHETANMNTFKYGVADRGASIRIPRAAEAEQKGYFEDRRPSSNMDPYVVCGMIFDTTCVW 462
QVGP+VGI+ D+L ++RFLL+R+ E V +S DPKPIPGDWNGAG HTN+ST+ MR++GGY+ I +A+EKLG RHK+HI AYGEGNERRLTG HETA++NTFK+GVA+RGASIR+ R E E KGYFEDRRP+SNMDPYVV MI +TT +W
Sbjct: 201 QVGPSVGISAGDELWIARFLLERITEIAGVVLSFDPKPIPGDWNGAGAHTNYSTKSMREEGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMITETTLLW 354 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13543.2636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13543.2636.1 >prot_E-fasciculatus_F_contig13543.2636.1 ID=prot_E-fasciculatus_F_contig13543.2636.1|Name=mRNA_E-fasciculatus_F_contig13543.2636.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=160bp QVGPAVGINGADDLVMSRFLLQRVAEDLQVAVSLDPKPIPGDWNGAGCHTback to top mRNA from alignment at E-fasciculatus_F_contig13543:149..2036+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13543.2636.1 ID=mRNA_E-fasciculatus_F_contig13543.2636.1|Name=mRNA_E-fasciculatus_F_contig13543.2636.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1888bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13543:149..2036+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13543:149..2036+ >mRNA_E-fasciculatus_F_contig13543.2636.1 ID=mRNA_E-fasciculatus_F_contig13543.2636.1|Name=mRNA_E-fasciculatus_F_contig13543.2636.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=960bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13543:149..2036+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |