mRNA_E-fasciculatus_F_contig13537.2632.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13537.2632.1
Unique NamemRNA_E-fasciculatus_F_contig13537.2632.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13537.2632.1 vs. uniprot
Match: D7FZG6_ECTSI (Acetyl-CoA carboxylase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG6_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 6.200e-55
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:    1 VWFPDSAYKTAQAINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGAQIVDALVAYKHPVFVYIPPNGELRGGAWVVIDPTINDQ 264
            VWFPDSAYKTAQAINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGAQIVDALVAYKHPVFVYIPPNGELRGGAWVVIDPTINDQ
Sbjct:  758 VWFPDSAYKTAQAINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGAQIVDALVAYKHPVFVYIPPNGELRGGAWVVIDPTINDQ 845
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BLAST of mRNA_E-fasciculatus_F_contig13537.2632.1 vs. uniprot
Match: A0A6H5L0S0_9PHAE (Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S0_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 7.070e-55
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:    1 VWFPDSAYKTAQAINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGAQIVDALVAYKHPVFVYIPPNGELRGGAWVVIDPTINDQ 264
            VWFPDSAYKTAQAINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGAQIVDALVAYKHPVFVYIPPNGELRGGAWVVIDPTINDQ
Sbjct: 1811 VWFPDSAYKTAQAINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGAQIVDALVAYKHPVFVYIPPNGELRGGAWVVIDPTINDQ 1898
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BLAST of mRNA_E-fasciculatus_F_contig13537.2632.1 vs. uniprot
Match: A0A7S2ABV7_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2ABV7_9DINO)

HSP 1 Score: 172 bits (435), Expect = 7.410e-54
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = 1 
Query:    1 VWFPDSAYKTAQAINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGAQIVDALVAYKHPVFVYIPPNGELRGGAWVVIDPTIN 258
            VWFPDSA+KTAQA+ DFNR ENLP+MIFANWRGFSGGTRDMYGEILK+GAQIVDALV Y+HP+F+YIPPNGELRGGAWVVIDP IN
Sbjct:   32 VWFPDSAFKTAQALRDFNRAENLPVMIFANWRGFSGGTRDMYGEILKYGAQIVDALVEYEHPIFIYIPPNGELRGGAWVVIDPQIN 117
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BLAST of mRNA_E-fasciculatus_F_contig13537.2632.1 vs. uniprot
Match: A0A836CCC4_9STRA (Acetyl-CoA carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCC4_9STRA)

HSP 1 Score: 184 bits (466), Expect = 4.780e-52
Identity = 82/88 (93.18%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 VWFPDSAYKTAQAINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGAQIVDALVAYKHPVFVYIPPNGELRGGAWVVIDPTINDQ 264
            VWFPDSAYKTAQAINDFN GENLPL+IFANWRGFSGGTRDM+GEILKFGAQIVDALVAYKHPVFVYIPPNGELRGGAWVV+DPTIN++
Sbjct: 1759 VWFPDSAYKTAQAINDFNHGENLPLIIFANWRGFSGGTRDMFGEILKFGAQIVDALVAYKHPVFVYIPPNGELRGGAWVVVDPTINEE 1846
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BLAST of mRNA_E-fasciculatus_F_contig13537.2632.1 vs. uniprot
Match: A0A7S0EW76_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EW76_9CRYP)

HSP 1 Score: 173 bits (438), Expect = 9.570e-52
Identity = 76/88 (86.36%), Postives = 82/88 (93.18%), Query Frame = 1 
Query:    1 VWFPDSAYKTAQAINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGAQIVDALVAYKHPVFVYIPPNGELRGGAWVVIDPTINDQ 264
            VWFPDSAYKTAQAI DFNRGENLPL+IFANWRGFSGGTRDMY EILKFG+ IVD L  YKHPVFVY+PPNGELRGGAWVV+DPTIN++
Sbjct:   28 VWFPDSAYKTAQAIEDFNRGENLPLIIFANWRGFSGGTRDMYNEILKFGSMIVDGLRTYKHPVFVYLPPNGELRGGAWVVVDPTINEE 115
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13537.2632.1 vs. uniprot
Match: A0A7S2QHL3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QHL3_9DINO)

HSP 1 Score: 165 bits (418), Expect = 1.550e-51
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    1 VWFPDSAYKTAQAINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGAQIVDALVAYKHPVFVYIPPNGELRGGAWVVIDPTI 255
            VWFPDSA KTA AI DFNRGENLPLMIFANWRGFSGGTRDMY E+LKFGAQIVDALV YKHPVF+YIPP GELRGG+WVV+DP I
Sbjct:   16 VWFPDSASKTATAIRDFNRGENLPLMIFANWRGFSGGTRDMYQEVLKFGAQIVDALVDYKHPVFIYIPPGGELRGGSWVVVDPAI 100
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BLAST of mRNA_E-fasciculatus_F_contig13537.2632.1 vs. uniprot
Match: A0A7S2F059_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2F059_9DINO)

HSP 1 Score: 173 bits (438), Expect = 3.960e-51
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 1 
Query:    1 VWFPDSAYKTAQAINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGAQIVDALVAYKHPVFVYIPPNGELRGGAWVVIDPTIN 258
            VWFPDSA+KTAQA+ DFNR ENLP+MIFANWRGFSGGTRDMYGEILKFGAQIVDALV Y+HP+FVYIPPNGELRGGAWVVIDP IN
Sbjct:   54 VWFPDSAFKTAQALRDFNRAENLPVMIFANWRGFSGGTRDMYGEILKFGAQIVDALVDYEHPIFVYIPPNGELRGGAWVVIDPKIN 139
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13537.2632.1 vs. uniprot
Match: A0A7S4G1P0_9EUGL (Acetyl-CoA carboxylase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G1P0_9EUGL)

HSP 1 Score: 181 bits (458), Expect = 5.740e-51
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:    1 VWFPDSAYKTAQAINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGAQIVDALVAYKHPVFVYIPPNGELRGGAWVVIDPTINDQ 264
            VW+PDSAYKTA AINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGA IVDALV YKHPVFVYIPPNGELRGGAWVVIDPTIN +
Sbjct: 1919 VWYPDSAYKTATAINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGAMIVDALVDYKHPVFVYIPPNGELRGGAWVVIDPTINSE 2006
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13537.2632.1 vs. uniprot
Match: A0A4D9D5Z2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Z2_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.130e-50
Identity = 77/88 (87.50%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:    1 VWFPDSAYKTAQAINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGAQIVDALVAYKHPVFVYIPPNGELRGGAWVVIDPTINDQ 264
            VW+PDSA+KTAQAI DFNRGENLPL+IFANWRGFSGGTRDM+GEILKFGA+IVDAL  Y+HPVFVYIPPNGELRGGAWVVIDPTIN++
Sbjct:  215 VWYPDSAFKTAQAIEDFNRGENLPLIIFANWRGFSGGTRDMFGEILKFGAKIVDALRTYRHPVFVYIPPNGELRGGAWVVIDPTINEE 302
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13537.2632.1 vs. uniprot
Match: A0A7S1TN16_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TN16_9RHOD)

HSP 1 Score: 171 bits (434), Expect = 6.810e-50
Identity = 74/88 (84.09%), Postives = 83/88 (94.32%), Query Frame = 1 
Query:    1 VWFPDSAYKTAQAINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGAQIVDALVAYKHPVFVYIPPNGELRGGAWVVIDPTINDQ 264
            VWFPDSAYKTAQAI DF RGENLPL+IFANWRGFSGGTRDM+GE+LKFGA IVDAL  Y+HPVF+Y+PPNGELRGGAWVV+DPTIN++
Sbjct:  271 VWFPDSAYKTAQAIEDFGRGENLPLIIFANWRGFSGGTRDMFGEVLKFGAMIVDALRKYRHPVFIYLPPNGELRGGAWVVVDPTINER 358
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13537.2632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZG6_ECTSI6.200e-55100.00Acetyl-CoA carboxylase, partial n=1 Tax=Ectocarpus... [more]
A0A6H5L0S0_9PHAE7.070e-55100.00Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP... [more]
A0A7S2ABV7_9DINO7.410e-5487.21Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A836CCC4_9STRA4.780e-5293.18Acetyl-CoA carboxylase n=1 Tax=Tribonema minus Tax... [more]
A0A7S0EW76_9CRYP9.570e-5286.36Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S2QHL3_9DINO1.550e-5187.06Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S2F059_9DINO3.960e-5189.53Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S4G1P0_9EUGL5.740e-5193.18Acetyl-CoA carboxylase n=1 Tax=Eutreptiella gymnas... [more]
A0A4D9D5Z2_9STRA2.130e-5087.50Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1TN16_9RHOD6.810e-5084.09Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13537contigE-fasciculatus_F_contig13537:2540..3249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.9
Seed ortholog evalue1.7e-41
Seed eggNOG ortholog55529.EKX48344
Preferred nameACC1
KEGG rclassRC00040,RC00253,RC00367
KEGG koko:K11262
KEGG ReactionR00742,R04385,R04386
KEGG Pathwayko00061,ko00254,ko00620,ko00640,ko01100,ko01110,ko01212,ko04152,ko04910,ko04922,map00061,map00254,map00620,map00640,map01100,map01110,map01212,map04152,map04910,map04922
KEGG ModuleM00082
EggNOG free text desc.acetyl-CoA carboxylase
EggNOG OGsCOG0439@1,KOG0368@2759
EC2.1.3.15,6.3.4.14,6.4.1.2
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927851.1498442-CDS-E-fasciculatus_F_contig13537:2539..26811622927851.1498442-CDS-E-fasciculatus_F_contig13537:2539..2681Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13537 2540..2681 -
1695995722.8092782-CDS-E-fasciculatus_F_contig13537:2539..26811695995722.8092782-CDS-E-fasciculatus_F_contig13537:2539..2681Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13537 2540..2681 -
1622927851.1659107-CDS-E-fasciculatus_F_contig13537:3127..32491622927851.1659107-CDS-E-fasciculatus_F_contig13537:3127..3249Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13537 3128..3249 -
1695995722.822399-CDS-E-fasciculatus_F_contig13537:3127..32491695995722.822399-CDS-E-fasciculatus_F_contig13537:3127..3249Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13537 3128..3249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13537.2632.1prot_E-fasciculatus_F_contig13537.2632.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13537 2540..3249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13537.2632.1

>prot_E-fasciculatus_F_contig13537.2632.1 ID=prot_E-fasciculatus_F_contig13537.2632.1|Name=mRNA_E-fasciculatus_F_contig13537.2632.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=88bp
VWFPDSAYKTAQAINDFNRGENLPLMIFANWRGFSGGTRDMYGEILKFGA
QIVDALVAYKHPVFVYIPPNGELRGGAWVVIDPTINDQ
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mRNA from alignment at E-fasciculatus_F_contig13537:2540..3249-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13537.2632.1 ID=mRNA_E-fasciculatus_F_contig13537.2632.1|Name=mRNA_E-fasciculatus_F_contig13537.2632.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=710bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13537:2540..3249- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTGGTTCCCGGACTCTGCCTACAAGACCGCCCAGGCGATCAACGACTT
CAACCGTGGCGAGAACCTTCCCCTCATGATCTTCGCGAACTGGCGTGGAT
TCAGCGGCGGAACTCGCGACATGTGAGGCCGTCGGTTGTGTCGGGTTGAT
CGCTGTTGACGTTAACGCAGTGGCTGATGGAAGATTAAGATTGCCATGCT
CTCTCCTTCTCCTTCTTTCATGCTCCACTGCTACTGCTGTTGGCATCTAC
ATTCTACATACAGTACGCTGGGATCAGAATCGCCACTTCTACAGCAGTTA
ATTGTGTTGTCTCATGCACGCATCGTACACCTTATGTGTCTTGGCATTCG
TTTCTGCCGTAGATTTGCGGGCTCAACAGTGTTCGCAAAATTGTCTGAAA
ACTCCGAGCATCGGAAGTTAAAGGCTGTATGCGCTGCTTGTGTATCTTGC
TTCGTTAACAACCCAAAGGTTGTTTGTCCACACGTGTATAGGATTCGTTC
GTTGCTGTGCGCTGCTGTGACGCTTTTTTCGTTTTTTTTTTTTAATGCGG
GAATTACTATTATATTAGGTATGGCGAGATCCTCAAGTTCGGTGCCCAGA
TCGTGGACGCCCTGGTGGCCTACAAGCACCCGGTGTTCGTGTACATCCCT
CCTAACGGAGAGCTGAGGGGGGGAGCCTGGGTGGTTATCGACCCCACCAT
CAACGATCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13537:2540..3249-

>mRNA_E-fasciculatus_F_contig13537.2632.1 ID=mRNA_E-fasciculatus_F_contig13537.2632.1|Name=mRNA_E-fasciculatus_F_contig13537.2632.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=528bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13537:2540..3249- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTGGTTCCCGGACTCTGCCTACAAGACCGCCCAGGCGATCAACGACTT
CAACCGTGGCGAGAACCTTCCCCTCATGATCTTCGCGAACTGGCGTGGAT
TCAGCGGCGGAACTCGCGACATGTGTGGTTCCCGGACTCTGCCTACAAGA
CCGCCCAGGCGATCAACGACTTCAACCGTGGCGAGAACCTTCCCCTCATG
ATCTTCGCGAACTGGCGTGGATTCAGCGGCGGAACTCGCGACATGTATGG
CGAGATCCTCAAGTTCGGTGCCCAGATCGTGGACGCCCTGGTGGCCTACA
AGCACCCGGTGTTCGTGTACATCCCTCCTAACGGAGAGCTGAGGGGGGGA
GCCTGGGTGGTTATCGACCCCACCATCAACGATCAGGTATGGCGAGATCC
TCAAGTTCGGTGCCCAGATCGTGGACGCCCTGGTGGCCTACAAGCACCCG
GTGTTCGTGTACATCCCTCCTAACGGAGAGCTGAGGGGGGGAGCCTGGGT
GGTTATCGACCCCACCATCAACGATCAG
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