mRNA_E-fasciculatus_F_contig13528.2627.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13528.2627.1
Unique NamemRNA_E-fasciculatus_F_contig13528.2627.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13528.2627.1 vs. uniprot
Match: D7FJN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJN0_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.190e-28
Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 FHEIVDDTSTTKEDTLDYTHVVFIGSNELIRVAQAFGRYSIGGEGYVDPVAFDKVFEVNATTGFPV 198
            F+EIVDD STTK++TLDYTHV+FIG+NEL RV +A  RYSIGGEGY DPVAFDKVFEVNATTGFPV
Sbjct:  158 FYEIVDDASTTKDETLDYTHVIFIGTNELNRVVEAITRYSIGGEGYEDPVAFDKVFEVNATTGFPV 223
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BLAST of mRNA_E-fasciculatus_F_contig13528.2627.1 vs. uniprot
Match: D7FYC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYC5_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 4.270e-27
Identity = 54/66 (81.82%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 FHEIVDDTSTTKEDTLDYTHVVFIGSNELIRVAQAFGRYSIGGEGYVDPVAFDKVFEVNATTGFPV 198
            F+EIVDDTSTT  DTLDYTHV+FIG NELI  A A  RYSIGGEGY DPVAFDKVFEVNATTG PV
Sbjct:  152 FYEIVDDTSTTTNDTLDYTHVIFIGINELIMAAAAVTRYSIGGEGYQDPVAFDKVFEVNATTGLPV 217
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BLAST of mRNA_E-fasciculatus_F_contig13528.2627.1 vs. uniprot
Match: D7FJN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN5_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 4.520e-22
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 FHEIVDDTSTTKEDTLDYTHVVFIGSNELIRVAQAFGRYSIGGEGYVDPVAFDKVFEVNATTGFPVF 201
            F+EIV++T    ++TLDYTHV+FIG+NEL RV +A  RYS GGEGY DPVAF+KVFEV+ATTGFPVF
Sbjct:  154 FYEIVNET----DETLDYTHVIFIGTNELNRVVEAITRYSTGGEGYEDPVAFEKVFEVDATTGFPVF 216
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BLAST of mRNA_E-fasciculatus_F_contig13528.2627.1 vs. uniprot
Match: A0A6H5KTW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.360e-16
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   46 LDYTHVVFIGSNELIRVAQAFGRYSIGGEGYVDPVAFDKVFEVNATTGFPV 198
            +DYTHV FIG+NE+ RV +A  RYS GG+ Y DPVAF+KVFEV+ATTGFPV
Sbjct:   99 VDYTHVAFIGANEMNRVIEAITRYSTGGQSYQDPVAFEKVFEVDATTGFPV 149
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BLAST of mRNA_E-fasciculatus_F_contig13528.2627.1 vs. uniprot
Match: D8LCE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE7_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 7.400e-8
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   40 DTLDYTHVVFIGSNELIRVAQAFGRYSIGGEGYVDP-VAFDKVFEV 174
            +T DYTH+++IG+ +L   + A  RYSIGGEGYVDP V FD +F+V
Sbjct:  167 ETADYTHIIYIGNEDLNSHSAATARYSIGGEGYVDPYVPFDMLFDV 212
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13528.2627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJN0_ECTSI1.190e-2881.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FYC5_ECTSI4.270e-2781.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FJN5_ECTSI4.520e-2270.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTW7_9PHAE1.360e-1670.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCE7_ECTSI7.400e-856.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13528contigE-fasciculatus_F_contig13528:2768..3391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size202
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927850.5802174-CDS-E-fasciculatus_F_contig13528:2767..28161622927850.5802174-CDS-E-fasciculatus_F_contig13528:2767..2816Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13528 2768..2816 +
1695995722.4990544-CDS-E-fasciculatus_F_contig13528:2767..28161695995722.4990544-CDS-E-fasciculatus_F_contig13528:2767..2816Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13528 2768..2816 +
1622927850.5951862-CDS-E-fasciculatus_F_contig13528:3238..33901622927850.5951862-CDS-E-fasciculatus_F_contig13528:3238..3390Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13528 3239..3390 +
1695995722.5079856-CDS-E-fasciculatus_F_contig13528:3238..33901695995722.5079856-CDS-E-fasciculatus_F_contig13528:3238..3390Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13528 3239..3390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13528.2627.1prot_E-fasciculatus_F_contig13528.2627.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13528 2768..3390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13528.2627.1

>prot_E-fasciculatus_F_contig13528.2627.1 ID=prot_E-fasciculatus_F_contig13528.2627.1|Name=mRNA_E-fasciculatus_F_contig13528.2627.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=67bp
FHEIVDDTSTTKEDTLDYTHVVFIGSNELIRVAQAFGRYSIGGEGYVDPV
AFDKVFEVNATTGFPVF
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mRNA from alignment at E-fasciculatus_F_contig13528:2768..3391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13528.2627.1 ID=mRNA_E-fasciculatus_F_contig13528.2627.1|Name=mRNA_E-fasciculatus_F_contig13528.2627.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13528:2768..3391+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCACGAAATCGTCGACGATACGAGCACAACTAAGGAGGACACTCTAGG
TGAGAAACGTCGCCAGCCCAACACTCGACGATATAGAACTCGCTGTTGGC
CTTCAACTTGAAGTCTGTTTTCAATTGTCCAACAGTTGCCGCATCCATTT
GCAGCAAGACATTTTTTAGCTACAAAATTTCCCTCGTGCGCACTGGACAT
CATCAGGATACGCACTGTTTCGGTTTGAACAGGTTGAGAGTATCCTGACG
TTCTCTACGGGACCGCTGCCTATGCAGACCTATATTGGTTGAGGCCATAC
TCTTCATGATTTCACATCACTATCAATTTGGTAGGGCTGCTCTGAGAGTG
AATGTTTGTCCGTCCCTGTTAAGCTTATCTCGTTAATCTCGAGGCATGAA
GGCCGCCCATGCGTGCCTGATGGTGCACAACTATCTGTTGTCGCGTCTGT
CGGCCTTGCTGTGCCTCCCAGACTACACCCACGTTGTTTTCATCGGGAGC
AACGAGCTGATCAGGGTTGCCCAGGCCTTCGGCCGTTATTCCATTGGAGG
GGAGGGCTACGTAGACCCCGTCGCTTTCGACAAGGTCTTCGAGGTCAACG
CCACCACCGGTTTCCCAGTATTCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13528:2768..3391+

>mRNA_E-fasciculatus_F_contig13528.2627.1 ID=mRNA_E-fasciculatus_F_contig13528.2627.1|Name=mRNA_E-fasciculatus_F_contig13528.2627.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13528:2768..3391+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCACGAAATCGTCGACGATACGAGCACAACTAAGGAGGACACTCTAGT
TCCACGAAATCGTCGACGATACGAGCACAACTAAGGAGGACACTCTAGAC
TACACCCACGTTGTTTTCATCGGGAGCAACGAGCTGATCAGGGTTGCCCA
GGCCTTCGGCCGTTATTCCATTGGAGGGGAGGGCTACGTAGACCCCGTCG
CTTTCGACAAGGTCTTCGAGGTCAACGCCACCACCGGTTTCCCAGTATTC
ACTACACCCACGTTGTTTTCATCGGGAGCAACGAGCTGATCAGGGTTGCC
CAGGCCTTCGGCCGTTATTCCATTGGAGGGGAGGGCTACGTAGACCCCGT
CGCTTTCGACAAGGTCTTCGAGGTCAACGCCACCACCGGTTTCCCAGTAT
TC
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