mRNA_E-fasciculatus_F_contig13524.2625.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13524.2625.1
Unique NamemRNA_E-fasciculatus_F_contig13524.2625.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: D7FME4_ECTSI (5\'-3\' exoribonuclease 1 (Exonuclease 2) (Exonuclease II) (Exo II) (P140) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME4_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 1.080e-69
Identity = 111/115 (96.52%), Postives = 114/115 (99.13%), Query Frame = 1
Query:    1 RALSREAVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTDAPMDTGGERPDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGGSTLHGMCSNYR 345
            RALSREAVKAVERGADVRQAVLVKNAM+KKTLLKNLEPSQLLAYHVADHTDAPMDTGGE+PDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGG TLHG+CSNYR
Sbjct:  509 RALSREAVKAVERGADVRQAVLVKNAMVKKTLLKNLEPSQLLAYHVADHTDAPMDTGGEKPDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGGGTLHGVCSNYR 623          
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: A0A6H5KVU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU6_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 1.580e-68
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 1
Query:    1 RALSREAVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTDAPMDTGGERPDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGGSTLHGMCSNYR 345
            RALSREAVKAVERGADVRQAVLVKNAM+KKTLLKNLEPSQLLAYHVADHTDAPMDTGGE+PDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGG TLHGMCSNYR
Sbjct:  376 RALSREAVKAVERGADVRQAVLVKNAMVKKTLLKNLEPSQLLAYHVADHTDAPMDTGGEKPDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGGGTLHGMCSNYR 490          
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: W7U4G2_9STRA (5'-3' exoribonuclease 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4G2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 5.140e-22
Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = 1
Query:    7 LSREAVKAVERGADVRQAVLVK-NAMIKKTLLKNLEPSQLLAYHVADHTDAPMDTGGERPDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGGSTLHGMCSNYR 345
            LSREA++A+ER AD  QA   K  A   K +   L P ++        +D      G +P+LGDR+VN+   GVPFG+ GTVVA H+ +ACVEV+FD+EFIGG++L G CS YR
Sbjct: 1081 LSREAIRAIERSADELQAKAKKAGAKYVKVVAVELSPEKVHCALSHKPSDVARRLAG-KPELGDRVVNLTGLGVPFGLRGTVVALHTQTACVEVLFDQEFIGGTSLQGTCSPYR 1193          
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: A0A7S2PS12_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PS12_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 9.470e-22
Identity = 55/114 (48.25%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    4 ALSREAVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTDAPMDTGGERPDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGGSTLHGMCSNYR 345
            A+ + AV A++R ++VR + L +   +K   LK L PS +  Y     T   + T    P LGDR+ N+ A GVPFG  GTVV  H+ S CVEVV DEEFIGGSTL G CSN+R
Sbjct:  815 AMPKSAVLAIQRASEVRSSALSQKKSVKDVKLK-LPPSAV--YREGSTTATAVMTSSGPPVLGDRVSNLCANGVPFGARGTVVGIHAKSGCVEVVMDEEFIGGSTLQGTCSNFR 925          
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: A0A7S2LUZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LUZ9_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.210e-20
Identity = 56/113 (49.56%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   19 AVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTD---APMDTGGERPDLGDRIVNMRAKGVPFGVWGTVVACHS-HSACVEVVFDEEFIGGSTLHGMCSNYR 345
            AV AV+R ADVR A L K+  +K++ +K +  S +        TD   A   +    PDLGDR+ N+ A GVPFG  GTVVA H     CVEVV DEEFIGGSTL G C+N+R
Sbjct:   79 AVHAVQRAADVRAANLEKDGAVKESNVK-VPASAIYRERSTAATDVLLASEHSVSAPPDLGDRVANLCANGVPFGARGTVVAIHDPKEGCVEVVMDEEFIGGSTLQGSCANFR 190          
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: A0A2R5GSM0_9STRA (5'-3' exoribonuclease 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSM0_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.140e-20
Identity = 58/120 (48.33%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    1 RALSREAVKAVERGAD-VRQAVL-VKNAMIKKTLLKNLEPSQLLAYHV---ADHTDAPMDTGGERPDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGGSTLHGMCSNYR 345
            +++SR+A+KAV+R +D VR++VL    A     ++  L P  L  Y     AD   +P  T  + P LGDRI NM +  VPFG+ GTVVA H+ + CVEVVFDEEFIGG+TL+G C N R
Sbjct: 1128 KSMSRDAIKAVQRASDDVRKSVLDAAKAREGSQVVIGLSPDILYKYGADIEADWLRSP--TAAQPPRLGDRIANMGSPVVPFGLAGTVVATHASTGCVEVVFDEEFIGGTTLYGSCGNNR 1245          
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: A0A1E7FFM9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFM9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.930e-20
Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    7 LSREAVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTDAPMDT---GGERPDLGDRIVNMRAKGVPFGVWGTVVACHSHSA-CVEVVFDEEFIGGSTLHGMCSNYR 345
            +++EAV AVE+  DVR   L K     ++L+K +  S L   +    TD  + +   G E P+LGDR+VN+ A G+PFG  G VV  H  S  CVE+V DEEF+GG+ L G+CSN+R
Sbjct:  516 MTQEAVIAVEKATDVRNLALKKKGFPMESLIK-IPGSVLYRENSTGATDVMLASDHNGNEAPELGDRVVNLCASGIPFGARGIVVGIHKASTGCVEIVMDEEFVGGTNLQGLCSNFR 631          
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: A0A7S4RC29_9STRA (5'-3' exoribonuclease 1 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RC29_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.010e-19
Identity = 56/113 (49.56%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   19 AVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTDAPMDTGGE---RPDLGDRIVNMRAKGVPFGVWGTVVACHSH-SACVEVVFDEEFIGGSTLHGMCSNYR 345
            AV AVER ADVR  V+ K    K+  ++ + P+ L        TD  + T       P+LGDRI N+ A GVPFG  GTVV+ H   S CVEVV D EFIGGSTL G CSN+R
Sbjct: 1091 AVAAVERAADVRLTVIDKQGQTKELNIR-VPPAALYKEGSTAATDVLLATDNNVNPAPELGDRIANLCANGVPFGARGTVVSIHDQASGCVEVVMDNEFIGGSTLQGSCSNFR 1202          
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: K0STL9_THAOC (5'-3' exoribonuclease 1 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0STL9_THAOC)

HSP 1 Score: 92.8 bits (229), Expect = 1.380e-19
Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   19 AVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTD---APMDTGGERPDLGDRIVNMRAKGVPFGVWGTVVACHSHS-ACVEVVFDEEFIGGSTLHGMCSNYR 345
            AV AV+R ADVR A + K+ ++K++ +K +  + L        TD   A  ++    P+LGDR+ N+ A GVPFG  GTVVA H  S  CVEVV DEEFIGGSTL G C+N+R
Sbjct: 1141 AVHAVQRAADVRSASVRKDGVVKESNVK-IPAAALYRESSTAATDVLLASENSVSAPPELGDRVANLCASGVPFGARGTVVAIHDPSEGCVEVVMDEEFIGGSTLQGSCANFR 1252          
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: A0A7S4EG33_9STRA (5'-3' exoribonuclease 1 n=4 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG33_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.880e-19
Identity = 50/117 (42.74%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    7 LSREAVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTDAPMDTG---GERPDLGDRIVNMRAKGVPFGVWGTVVACH-SHSACVEVVFDEEFIGGSTLHGMCSNYR 345
            + REAV AVE+  D+R   L K    K++L+K +  + L   +    TD  + +     E P+LGDR+VN+   G+PFG  GTVV  H + + CVE+V DEEF+GG++L G+CSN+R
Sbjct: 1074 MPREAVTAVEKTTDIRNLQLKKKGFPKESLVK-IPGNALYRENSTSATDVMLASDHNENEAPELGDRVVNLCVSGIPFGARGTVVGIHKATTGCVEIVMDEEFVGGTSLQGLCSNFR 1189          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FME4_ECTSI1.080e-6996.525\'-3\' exoribonuclease 1 (Exonuclease 2) (Exonucl... [more]
A0A6H5KVU6_9PHAE1.580e-6897.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7U4G2_9STRA5.140e-2248.255'-3' exoribonuclease 1 n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2PS12_9STRA9.470e-2248.25Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2LUZ9_9STRA1.210e-2049.56Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A2R5GSM0_9STRA2.140e-2048.335'-3' exoribonuclease 1 n=1 Tax=Hondaea fermentalg... [more]
A0A1E7FFM9_9STRA6.930e-2044.44Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A7S4RC29_9STRA1.010e-1949.565'-3' exoribonuclease 1 n=3 Tax=Ditylum brightwell... [more]
K0STL9_THAOC1.380e-1948.675'-3' exoribonuclease 1 n=1 Tax=Thalassiosira ocea... [more]
A0A7S4EG33_9STRA1.880e-1942.745'-3' exoribonuclease 1 n=4 Tax=Pseudo-nitzschia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13524contigE-fasciculatus_F_contig13524:2213..3154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.0
Seed ortholog evalue6.9e-59
Seed eggNOG ortholog2880.D7FME4
KEGG koko:K12618
KEGG Pathwayko03008,ko03018,map03008,map03018
EggNOG free text desc.5'-3' exoribonuclease activity
EggNOG OGsCOG5049@1,KOG2045@2759
COG Functional cat.ADL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size348
Cds size348
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13524.2625.1prot_E-fasciculatus_F_contig13524.2625.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13524 2213..3154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927850.355377-CDS-E-fasciculatus_F_contig13524:2212..23631622927850.355377-CDS-E-fasciculatus_F_contig13524:2212..2363Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13524 2213..2363 -
1695995722.4136953-CDS-E-fasciculatus_F_contig13524:2212..23631695995722.4136953-CDS-E-fasciculatus_F_contig13524:2212..2363Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13524 2213..2363 -
1622927850.3730805-CDS-E-fasciculatus_F_contig13524:2645..27401622927850.3730805-CDS-E-fasciculatus_F_contig13524:2645..2740Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13524 2646..2740 -
1695995722.4233644-CDS-E-fasciculatus_F_contig13524:2645..27401695995722.4233644-CDS-E-fasciculatus_F_contig13524:2645..2740Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13524 2646..2740 -
1622927850.3893213-CDS-E-fasciculatus_F_contig13524:3052..31541622927850.3893213-CDS-E-fasciculatus_F_contig13524:3052..3154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13524 3053..3154 -
1695995722.4310882-CDS-E-fasciculatus_F_contig13524:3052..31541695995722.4310882-CDS-E-fasciculatus_F_contig13524:3052..3154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13524 3053..3154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13524.2625.1

>prot_E-fasciculatus_F_contig13524.2625.1 ID=prot_E-fasciculatus_F_contig13524.2625.1|Name=mRNA_E-fasciculatus_F_contig13524.2625.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=116bp
RALSREAVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHT
DAPMDTGGERPDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEE
FIGGSTLHGMCSNYR*
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mRNA from alignment at E-fasciculatus_F_contig13524:2213..3154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13524.2625.1 ID=mRNA_E-fasciculatus_F_contig13524.2625.1|Name=mRNA_E-fasciculatus_F_contig13524.2625.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=942bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13524:2213..3154- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGCCTTATCCCGAGAAGCAGTGAAGGCGGTGGAGAGGGGAGCCGACGT GCGACAGGCGGTGTTGGTCAAGAACGCCATGATCAAGAAGACCTTGCTCA AGGTGAGAGACTAAAATTAAAATTTCATACAATATGTAGTCGTTGTTGTA GTAGTTGTTGCTGCTGCGGGCGGCCCTTTTTTGTTGTTATCTTTTTGTGT CAACATCCTATCGGTCAGCGGTGCTCTACCGGTTATTGTTTGTGGTGGTG AGTGTTGTTATTGTTGCTGTTGTTGCTGTTGTTGTTGTCGTCGTTGCTGC TGCTGCCGTTGCCGTTGATGCTACCACTTGCCTTTTCGTTGCTGCTGACC ATGCCCCCCACCCCGCCCCTCTCCTGTCTGCATGATCTTCATGTTTTTTC GTTTTTCGTTTCAGAATCTGGAACCATCACAGCTGCTGGCCTACCACGTC GCTGACCACACGGACGCTCCGATGGACACAGGGGGGGAAAGGCCAGACCT TGGCGATAGGTACGGTACAGCAGTGGGGGCCGCTCAGTAGTGCCGGTTGA AAAAAAATAAAAATAAATAGTGTCGGTTGAAAAAAAATAAAATAGTGCCG GTGTTTTCGGTGGGCACTACTGAGGACTAAGAATCACAAGTCATGACTGT TCCGGTGCGAGATGTTGATTGGCCAATCAAAATCGTTTTGACATGCATTG TTTTTTGGTGATGGTGGCCAGTCAGAATCGTTCCGCGTCGTTGCCAATCA CAATTTTTCCCTATCGCGTGTGATGTTGATCGGCGAGTCAGAATCGTCAA CATGCGGGCCAAGGGGGTGCCGTTCGGGGTCTGGGGCACCGTGGTTGCGT GCCACAGCCACAGCGCGTGCGTGGAAGTGGTTTTCGACGAAGAGTTCATC GGCGGGAGCACTCTCCACGGAATGTGCTCCAACTACAGGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13524:2213..3154-

>mRNA_E-fasciculatus_F_contig13524.2625.1 ID=mRNA_E-fasciculatus_F_contig13524.2625.1|Name=mRNA_E-fasciculatus_F_contig13524.2625.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13524:2213..3154- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGCCTTATCCCGAGAAGCAGTGAAGGCGGTGGAGAGGGGAGCCGACGT
GCGACAGGCGGTGTTGGTCAAGAACGCCATGATCAAGAAGACCTTGCTCA
AGAGGGCCTTATCCCGAGAAGCAGTGAAGGCGGTGGAGAGGGGAGCCGAC
GTGCGACAGGCGGTGTTGGTCAAGAACGCCATGATCAAGAAGACCTTGCT
CAAGAATCTGGAACCATCACAGCTGCTGGCCTACCACGTCGCTGACCACA
CGGACGCTCCGATGGACACAGGGGGGGAAAGGCCAGACCTTGGCGATAGA
ATCTGGAACCATCACAGCTGCTGGCCTACCACGTCGCTGACCACACGGAC
GCTCCGATGGACACAGGGGGGGAAAGGCCAGACCTTGGCGATAGAATCGT
CAACATGCGGGCCAAGGGGGTGCCGTTCGGGGTCTGGGGCACCGTGGTTG
CGTGCCACAGCCACAGCGCGTGCGTGGAAGTGGTTTTCGACGAAGAGTTC
ATCGGCGGGAGCACTCTCCACGGAATGTGCTCCAACTACAGGTAGAATCG
TCAACATGCGGGCCAAGGGGGTGCCGTTCGGGGTCTGGGGCACCGTGGTT
GCGTGCCACAGCCACAGCGCGTGCGTGGAAGTGGTTTTCGACGAAGAGTT
CATCGGCGGGAGCACTCTCCACGGAATGTGCTCCAACTACAGGTAG
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