mRNA_E-fasciculatus_F_contig13524.2625.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: D7FME4_ECTSI (5\'-3\' exoribonuclease 1 (Exonuclease 2) (Exonuclease II) (Exo II) (P140) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME4_ECTSI) HSP 1 Score: 229 bits (584), Expect = 1.080e-69 Identity = 111/115 (96.52%), Postives = 114/115 (99.13%), Query Frame = 1
Query: 1 RALSREAVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTDAPMDTGGERPDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGGSTLHGMCSNYR 345
RALSREAVKAVERGADVRQAVLVKNAM+KKTLLKNLEPSQLLAYHVADHTDAPMDTGGE+PDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGG TLHG+CSNYR
Sbjct: 509 RALSREAVKAVERGADVRQAVLVKNAMVKKTLLKNLEPSQLLAYHVADHTDAPMDTGGEKPDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGGGTLHGVCSNYR 623
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: A0A6H5KVU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU6_9PHAE) HSP 1 Score: 231 bits (588), Expect = 1.580e-68 Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 1
Query: 1 RALSREAVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTDAPMDTGGERPDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGGSTLHGMCSNYR 345
RALSREAVKAVERGADVRQAVLVKNAM+KKTLLKNLEPSQLLAYHVADHTDAPMDTGGE+PDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGG TLHGMCSNYR
Sbjct: 376 RALSREAVKAVERGADVRQAVLVKNAMVKKTLLKNLEPSQLLAYHVADHTDAPMDTGGEKPDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGGGTLHGMCSNYR 490
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: W7U4G2_9STRA (5'-3' exoribonuclease 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4G2_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 5.140e-22 Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = 1
Query: 7 LSREAVKAVERGADVRQAVLVK-NAMIKKTLLKNLEPSQLLAYHVADHTDAPMDTGGERPDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGGSTLHGMCSNYR 345
LSREA++A+ER AD QA K A K + L P ++ +D G +P+LGDR+VN+ GVPFG+ GTVVA H+ +ACVEV+FD+EFIGG++L G CS YR
Sbjct: 1081 LSREAIRAIERSADELQAKAKKAGAKYVKVVAVELSPEKVHCALSHKPSDVARRLAG-KPELGDRVVNLTGLGVPFGLRGTVVALHTQTACVEVLFDQEFIGGTSLQGTCSPYR 1193
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: A0A7S2PS12_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PS12_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 9.470e-22 Identity = 55/114 (48.25%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 4 ALSREAVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTDAPMDTGGERPDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGGSTLHGMCSNYR 345
A+ + AV A++R ++VR + L + +K LK L PS + Y T + T P LGDR+ N+ A GVPFG GTVV H+ S CVEVV DEEFIGGSTL G CSN+R
Sbjct: 815 AMPKSAVLAIQRASEVRSSALSQKKSVKDVKLK-LPPSAV--YREGSTTATAVMTSSGPPVLGDRVSNLCANGVPFGARGTVVGIHAKSGCVEVVMDEEFIGGSTLQGTCSNFR 925
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: A0A7S2LUZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LUZ9_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.210e-20 Identity = 56/113 (49.56%), Postives = 69/113 (61.06%), Query Frame = 1
Query: 19 AVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTD---APMDTGGERPDLGDRIVNMRAKGVPFGVWGTVVACHS-HSACVEVVFDEEFIGGSTLHGMCSNYR 345
AV AV+R ADVR A L K+ +K++ +K + S + TD A + PDLGDR+ N+ A GVPFG GTVVA H CVEVV DEEFIGGSTL G C+N+R
Sbjct: 79 AVHAVQRAADVRAANLEKDGAVKESNVK-VPASAIYRERSTAATDVLLASEHSVSAPPDLGDRVANLCANGVPFGARGTVVAIHDPKEGCVEVVMDEEFIGGSTLQGSCANFR 190
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: A0A2R5GSM0_9STRA (5'-3' exoribonuclease 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSM0_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 2.140e-20 Identity = 58/120 (48.33%), Postives = 77/120 (64.17%), Query Frame = 1
Query: 1 RALSREAVKAVERGAD-VRQAVL-VKNAMIKKTLLKNLEPSQLLAYHV---ADHTDAPMDTGGERPDLGDRIVNMRAKGVPFGVWGTVVACHSHSACVEVVFDEEFIGGSTLHGMCSNYR 345
+++SR+A+KAV+R +D VR++VL A ++ L P L Y AD +P T + P LGDRI NM + VPFG+ GTVVA H+ + CVEVVFDEEFIGG+TL+G C N R
Sbjct: 1128 KSMSRDAIKAVQRASDDVRKSVLDAAKAREGSQVVIGLSPDILYKYGADIEADWLRSP--TAAQPPRLGDRIANMGSPVVPFGLAGTVVATHASTGCVEVVFDEEFIGGTTLYGSCGNNR 1245
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: A0A1E7FFM9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFM9_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 6.930e-20 Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 1
Query: 7 LSREAVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTDAPMDT---GGERPDLGDRIVNMRAKGVPFGVWGTVVACHSHSA-CVEVVFDEEFIGGSTLHGMCSNYR 345
+++EAV AVE+ DVR L K ++L+K + S L + TD + + G E P+LGDR+VN+ A G+PFG G VV H S CVE+V DEEF+GG+ L G+CSN+R
Sbjct: 516 MTQEAVIAVEKATDVRNLALKKKGFPMESLIK-IPGSVLYRENSTGATDVMLASDHNGNEAPELGDRVVNLCASGIPFGARGIVVGIHKASTGCVEIVMDEEFVGGTNLQGLCSNFR 631
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: A0A7S4RC29_9STRA (5'-3' exoribonuclease 1 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RC29_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.010e-19 Identity = 56/113 (49.56%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 19 AVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTDAPMDTGGE---RPDLGDRIVNMRAKGVPFGVWGTVVACHSH-SACVEVVFDEEFIGGSTLHGMCSNYR 345
AV AVER ADVR V+ K K+ ++ + P+ L TD + T P+LGDRI N+ A GVPFG GTVV+ H S CVEVV D EFIGGSTL G CSN+R
Sbjct: 1091 AVAAVERAADVRLTVIDKQGQTKELNIR-VPPAALYKEGSTAATDVLLATDNNVNPAPELGDRIANLCANGVPFGARGTVVSIHDQASGCVEVVMDNEFIGGSTLQGSCSNFR 1202
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: K0STL9_THAOC (5'-3' exoribonuclease 1 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0STL9_THAOC) HSP 1 Score: 92.8 bits (229), Expect = 1.380e-19 Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 1
Query: 19 AVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTD---APMDTGGERPDLGDRIVNMRAKGVPFGVWGTVVACHSHS-ACVEVVFDEEFIGGSTLHGMCSNYR 345
AV AV+R ADVR A + K+ ++K++ +K + + L TD A ++ P+LGDR+ N+ A GVPFG GTVVA H S CVEVV DEEFIGGSTL G C+N+R
Sbjct: 1141 AVHAVQRAADVRSASVRKDGVVKESNVK-IPAAALYRESSTAATDVLLASENSVSAPPELGDRVANLCASGVPFGARGTVVAIHDPSEGCVEVVMDEEFIGGSTLQGSCANFR 1252
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Match: A0A7S4EG33_9STRA (5'-3' exoribonuclease 1 n=4 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG33_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.880e-19 Identity = 50/117 (42.74%), Postives = 73/117 (62.39%), Query Frame = 1
Query: 7 LSREAVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTDAPMDTG---GERPDLGDRIVNMRAKGVPFGVWGTVVACH-SHSACVEVVFDEEFIGGSTLHGMCSNYR 345
+ REAV AVE+ D+R L K K++L+K + + L + TD + + E P+LGDR+VN+ G+PFG GTVV H + + CVE+V DEEF+GG++L G+CSN+R
Sbjct: 1074 MPREAVTAVEKTTDIRNLQLKKKGFPKESLVK-IPGNALYRENSTSATDVMLASDHNENEAPELGDRVVNLCVSGIPFGARGTVVGIHKATTGCVEIVMDEEFVGGTSLQGLCSNFR 1189 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13524.2625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13524.2625.1 >prot_E-fasciculatus_F_contig13524.2625.1 ID=prot_E-fasciculatus_F_contig13524.2625.1|Name=mRNA_E-fasciculatus_F_contig13524.2625.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=116bp RALSREAVKAVERGADVRQAVLVKNAMIKKTLLKNLEPSQLLAYHVADHTback to top mRNA from alignment at E-fasciculatus_F_contig13524:2213..3154- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13524.2625.1 ID=mRNA_E-fasciculatus_F_contig13524.2625.1|Name=mRNA_E-fasciculatus_F_contig13524.2625.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=942bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13524:2213..3154- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13524:2213..3154- >mRNA_E-fasciculatus_F_contig13524.2625.1 ID=mRNA_E-fasciculatus_F_contig13524.2625.1|Name=mRNA_E-fasciculatus_F_contig13524.2625.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13524:2213..3154- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |