mRNA_E-fasciculatus_F_contig13521.2624.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13521.2624.1
Unique NamemRNA_E-fasciculatus_F_contig13521.2624.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13521.2624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13521contigE-fasciculatus_F_contig13521:818..2476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1248
Cds size1248
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927850.2575588-CDS-E-fasciculatus_F_contig13521:817..19331622927850.2575588-CDS-E-fasciculatus_F_contig13521:817..1933Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13521 818..1933 +
1695995722.3981273-CDS-E-fasciculatus_F_contig13521:817..19331695995722.3981273-CDS-E-fasciculatus_F_contig13521:817..1933Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13521 818..1933 +
1622927850.2797818-CDS-E-fasciculatus_F_contig13521:2344..24761622927850.2797818-CDS-E-fasciculatus_F_contig13521:2344..2476Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13521 2345..2476 +
1695995722.4057126-CDS-E-fasciculatus_F_contig13521:2344..24761695995722.4057126-CDS-E-fasciculatus_F_contig13521:2344..2476Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13521 2345..2476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13521.2624.1prot_E-fasciculatus_F_contig13521.2624.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13521 818..2476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13521.2624.1

>prot_E-fasciculatus_F_contig13521.2624.1 ID=prot_E-fasciculatus_F_contig13521.2624.1|Name=mRNA_E-fasciculatus_F_contig13521.2624.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=416bp
MVTYTEAEPRFSRWLQSYRDDRAAHSRARKMHSDPAMLDADLAGVLSVMR
MPGHREPTAAFREATKMLLNGARSSTEHFHDHELDFNLSQVFDVLEYLLL
EGTRDEYRVAAAFLEALTASGSAAVLNNRRYSGNGGTPLPYYFLEAVVSG
RPWSYTTWMANLPYSALLPHLGSPKVRAYREICFRTLARMAFFSAERTLA
RGGNHPFMGLLEGRGPADPMLPFDSCRIYRAIVDFPVNHSAILDVLCLMI
FVHRALPWPRQQHLADVEHASSVGDYTGPRLVQNTMYMMIMVPGFLRELV
NQQLWHVPFAYGAGSYETSRRMCNMCFGNRQHEKMLIRRLKETCVVSTWI
CGGGQRPLLLEICRQRRRRVVEAVATGAPLAFSIAVPELLAFVRGPSVRG
KKQRLAAWLESKCEG*
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mRNA from alignment at E-fasciculatus_F_contig13521:818..2476+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13521.2624.1 ID=mRNA_E-fasciculatus_F_contig13521.2624.1|Name=mRNA_E-fasciculatus_F_contig13521.2624.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1659bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13521:818..2476+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGACTTACACTGAAGCGGAGCCTCGCTTCAGTCGGTGGCTTCAGAG
TTACCGGGACGATCGAGCGGCGCACAGCAGGGCTCGAAAGATGCACTCCG
ATCCTGCTATGCTCGATGCTGATCTCGCCGGTGTGCTGTCTGTAATGCGC
ATGCCAGGCCATAGGGAGCCTACTGCCGCGTTCCGTGAAGCAACCAAAAT
GCTGTTAAATGGGGCACGTTCAAGCACGGAACATTTCCACGACCACGAAT
TGGATTTCAACTTGTCGCAAGTTTTTGATGTATTGGAATATCTGTTGCTA
GAGGGCACTCGTGATGAATATCGAGTCGCTGCGGCATTCTTGGAAGCACT
CACGGCCAGTGGGTCGGCTGCGGTATTGAACAACAGGCGCTACTCCGGAA
ACGGAGGAACCCCACTACCGTACTACTTCCTGGAGGCGGTGGTGAGTGGA
AGGCCATGGTCATACACTACATGGATGGCCAATTTACCATATTCCGCATT
GTTACCCCATCTTGGATCCCCGAAAGTCCGGGCCTATCGCGAAATCTGCT
TCCGAACGTTGGCGCGTATGGCGTTCTTCAGCGCTGAGCGCACCCTAGCG
CGCGGGGGCAACCATCCGTTCATGGGGCTGCTCGAAGGTCGTGGTCCAGC
GGACCCAATGCTCCCGTTCGACAGTTGCCGGATATACCGTGCTATTGTTG
ATTTTCCGGTGAATCATTCGGCGATCCTCGACGTGCTTTGCCTGATGATC
TTCGTGCATCGAGCACTTCCGTGGCCCCGACAGCAGCATCTTGCCGATGT
AGAGCATGCAAGCAGCGTGGGGGATTACACCGGCCCGCGTCTTGTGCAAA
ACACGATGTACATGATGATCATGGTGCCGGGCTTCTTGCGGGAGCTCGTC
AACCAACAGCTATGGCATGTGCCTTTCGCGTACGGCGCTGGAAGCTATGA
GACTTCCCGTCGTATGTGCAACATGTGCTTTGGTAATCGGCAGCATGAGA
AAATGTTGATACGGAGGCTGAAGGAGACTTGCGTCGTGTCGACGTGGATT
TGCGGCGGGGGTCAGCGCCCCTTGTTGCTAGAGATATGCCGACAACGCCG
CCGGCGAGTGGTGGAGGTGAGGAACAACCCGTATAGCGATGGCCATGAGC
TACGCGCGACGGTCGCGTAGCCTCCCATGATTGTTCGAATTTCTCGTGAG
ATTAATTGAACCACAAGCATGCCCACGACGTTCCGATGTGTGTACAATAG
AACTTGTCGTCTGTCGATTCCTACTTTTGTGCGATGCGGATTTACGCGGT
TGCGTAGCCAACGTTGTCAGGATCGTAGGCTTCACCCCTTTTCGCACGGC
GCGTCCGCCCGATAGACTTTTTCGTGTAGGCGACCTATCGCGATGCATTG
TGTACACGAACAAGTTCGGAGACGGGACTACAGTATATGCCGCCTACACC
AATGGCTACACGCAGTATTTTCGAGTTGCACGCATTACTAGCAATATTCG
CCCTCGTTGTTGATAAACGCGATGCAGGCGGTGGCTACGGGCGCGCCGTT
GGCATTTTCTATCGCTGTGCCTGAGCTGCTGGCATTTGTTCGCGGACCTA
GTGTTCGAGGAAAGAAGCAGCGACTTGCCGCATGGTTGGAGTCCAAGTGT
GAAGGCTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13521:818..2476+

>mRNA_E-fasciculatus_F_contig13521.2624.1 ID=mRNA_E-fasciculatus_F_contig13521.2624.1|Name=mRNA_E-fasciculatus_F_contig13521.2624.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2496bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13521:818..2476+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGACTTACACTGAAGCGGAGCCTCGCTTCAGTCGGTGGCTTCAGAG
TTACCGGGACGATCGAGCGGCGCACAGCAGGGCTCGAAAGATGCACTCCG
ATCCTGCTATGCTCGATGCTGATCTCGCCGGTGTGCTGTCTGTAATGCGC
ATGCCAGGCCATAGGGAGCCTACTGCCGCGTTCCGTGAAGCAACCAAAAT
GCTGTTAAATGGGGCACGTTCAAGCACGGAACATTTCCACGACCACGAAT
TGGATTTCAACTTGTCGCAAGTTTTTGATGTATTGGAATATCTGTTGCTA
GAGGGCACTCGTGATGAATATCGAGTCGCTGCGGCATTCTTGGAAGCACT
CACGGCCAGTGGGTCGGCTGCGGTATTGAACAACAGGCGCTACTCCGGAA
ACGGAGGAACCCCACTACCGTACTACTTCCTGGAGGCGGTGGTGAGTGGA
AGGCCATGGTCATACACTACATGGATGGCCAATTTACCATATTCCGCATT
GTTACCCCATCTTGGATCCCCGAAAGTCCGGGCCTATCGCGAAATCTGCT
TCCGAACGTTGGCGCGTATGGCGTTCTTCAGCGCTGAGCGCACCCTAGCG
CGCGGGGGCAACCATCCGTTCATGGGGCTGCTCGAAGGTCGTGGTCCAGC
GGACCCAATGCTCCCGTTCGACAGTTGCCGGATATACCGTGCTATTGTTG
ATTTTCCGGTGAATCATTCGGCGATCCTCGACGTGCTTTGCCTGATGATC
TTCGTGCATCGAGCACTTCCGTGGCCCCGACAGCAGCATCTTGCCGATGT
AGAGCATGCAAGCAGCGTGGGGGATTACACCGGCCCGCGTCTTGTGCAAA
ACACGATGTACATGATGATCATGGTGCCGGGCTTCTTGCGGGAGCTCGTC
AACCAACAGCTATGGCATGTGCCTTTCGCGTACGGCGCTGGAAGCTATGA
GACTTCCCGTCGTATGTGCAACATGTGCTTTGGTAATCGGCAGCATGAGA
AAATGTTGATACGGAGGCTGAAGGAGACTTGCGTCGTGTCGACGTGGATT
TGCGGCGGGGGTCAGCGCCCCTTGTTGCTAGAGATATGCCGACAACGCCG
CCGGCGAGTGGTGGAGATGGTGACTTACACTGAAGCGGAGCCTCGCTTCA
GTCGGTGGCTTCAGAGTTACCGGGACGATCGAGCGGCGCACAGCAGGGCT
CGAAAGATGCACTCCGATCCTGCTATGCTCGATGCTGATCTCGCCGGTGT
GCTGTCTGTAATGCGCATGCCAGGCCATAGGGAGCCTACTGCCGCGTTCC
GTGAAGCAACCAAAATGCTGTTAAATGGGGCACGTTCAAGCACGGAACAT
TTCCACGACCACGAATTGGATTTCAACTTGTCGCAAGTTTTTGATGTATT
GGAATATCTGTTGCTAGAGGGCACTCGTGATGAATATCGAGTCGCTGCGG
CATTCTTGGAAGCACTCACGGCCAGTGGGTCGGCTGCGGTATTGAACAAC
AGGCGCTACTCCGGAAACGGAGGAACCCCACTACCGTACTACTTCCTGGA
GGCGGTGGTGAGTGGAAGGCCATGGTCATACACTACATGGATGGCCAATT
TACCATATTCCGCATTGTTACCCCATCTTGGATCCCCGAAAGTCCGGGCC
TATCGCGAAATCTGCTTCCGAACGTTGGCGCGTATGGCGTTCTTCAGCGC
TGAGCGCACCCTAGCGCGCGGGGGCAACCATCCGTTCATGGGGCTGCTCG
AAGGTCGTGGTCCAGCGGACCCAATGCTCCCGTTCGACAGTTGCCGGATA
TACCGTGCTATTGTTGATTTTCCGGTGAATCATTCGGCGATCCTCGACGT
GCTTTGCCTGATGATCTTCGTGCATCGAGCACTTCCGTGGCCCCGACAGC
AGCATCTTGCCGATGTAGAGCATGCAAGCAGCGTGGGGGATTACACCGGC
CCGCGTCTTGTGCAAAACACGATGTACATGATGATCATGGTGCCGGGCTT
CTTGCGGGAGCTCGTCAACCAACAGCTATGGCATGTGCCTTTCGCGTACG
GCGCTGGAAGCTATGAGACTTCCCGTCGTATGTGCAACATGTGCTTTGGT
AATCGGCAGCATGAGAAAATGTTGATACGGAGGCTGAAGGAGACTTGCGT
CGTGTCGACGTGGATTTGCGGCGGGGGTCAGCGCCCCTTGTTGCTAGAGA
TATGCCGACAACGCCGCCGGCGAGTGGTGGAGGCGGTGGCTACGGGCGCG
CCGTTGGCATTTTCTATCGCTGTGCCTGAGCTGCTGGCATTTGTTCGCGG
ACCTAGTGTTCGAGGAAAGAAGCAGCGACTTGCCGCATGGTTGGAGTCCA
AGTGTGAAGGCTAGGCGGTGGCTACGGGCGCGCCGTTGGCATTTTCTATC
GCTGTGCCTGAGCTGCTGGCATTTGTTCGCGGACCTAGTGTTCGAGGAAA
GAAGCAGCGACTTGCCGCATGGTTGGAGTCCAAGTGTGAAGGCTAG
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