mRNA_E-fasciculatus_F_contig13520.2623.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13520.2623.1
Unique NamemRNA_E-fasciculatus_F_contig13520.2623.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13520.2623.1 vs. uniprot
Match: D8LM82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM82_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 1.190e-80
Identity = 143/193 (74.09%), Postives = 151/193 (78.24%), Query Frame = 1 
Query:   64 SSLFLGDDAQEGHFGGAFPSPRA-LPRSSTDGAAVARLPPPKATKTVATMVSKRATPVCAFPPPPPSTITHLPISKAGRSIAANIVQRLRTAIDTRDACDMPAAGLLDMSGKCAAMKARLGSNSKRCPAEVQRLTELLSPLFSMWANIKSVIRNSNEWVSPRDQKEAMDLFGLHLAHCYALLRVVKNSVSVDS 639
            ++ F GD    G    +F SPRA LP  STD  AVAR        TV TMVSKR TPVCAFPP   ST +HL ISKAGRSIAANIV RLRTAI+T DACDMPAAGLLDMSGKCAAMKARLGS+SKRCP EVQRLTELLS LFSMWANIKSVIRNSNEWVS  DQKEAMDLFGLHLAH +ALLR +KNS S  S
Sbjct:    9 ATFFWGDATHAGSSSRSFVSPRAPLPGPSTDRVAVAR-------PTVNTMVSKRTTPVCAFPPXXXSTTSHLRISKAGRSIAANIVGRLRTAIETGDACDMPAAGLLDMSGKCAAMKARLGSSSKRCPTEVQRLTELLSSLFSMWANIKSVIRNSNEWVSLTDQKEAMDLFGLHLAHSHALLRNIKNSTSTAS 194
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BLAST of mRNA_E-fasciculatus_F_contig13520.2623.1 vs. uniprot
Match: D7FK84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK84_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 8.620e-30
Identity = 64/115 (55.65%), Postives = 79/115 (68.70%), Query Frame = 1 
Query:  280 ISKAGRSIAANIVQRLRTAIDTRDACDMPAAGLLDMSGKCAAMKARLGSNSKRCPAEVQRLTELLSPLFSMWANIKSVIRNSNEWVSPRDQKEAMDLFGLHLAHCYALLRVVKNS 624
            ++KA + +   IV RL+TAID +DACD+PA GLL +S KCAA+ A L SN K CPA  +RL ELLSPL +MW   K VIR S EWV+P  Q EA +L GLHLA CY  L+  K +
Sbjct:   90 MTKAEKRVTVIIVGRLKTAIDAKDACDVPAVGLLTLSVKCAAINAALRSN-KCCPAGAERLRELLSPLLAMWKTAKFVIRGSKEWVTPDHQAEAFNLIGLHLAECYKALKPTKTA 203
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BLAST of mRNA_E-fasciculatus_F_contig13520.2623.1 vs. uniprot
Match: D7FKA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA1_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 5.030e-29
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = 1 
Query:  280 ISKAGRSIAANIVQRLRTAIDTRDACDMPAAGLLDMSGKCAAMKARLGSNSKRCPAEVQRLTELLSPLFSMWANIKSVIRNSNEWVSPRDQKEAMDLFGLHLAHCYALLRVVKNS 624
            ++K  + +A ++V RL+TAID +DACD+PA GLL +S KCAA+ A L SN K CP   +RL ELLSPL +MW   K VIR+S EWV+P  Q +A +L GLHLA C+  L  +K +
Sbjct:   90 MTKTEKRVAVDVVGRLKTAIDAKDACDVPAVGLLSLSVKCAAINAALRSN-KCCPTGAERLRELLSPLLAMWKTAKFVIRSSKEWVTPDHQAKAFNLIGLHLAECHKALLPIKTA 203
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BLAST of mRNA_E-fasciculatus_F_contig13520.2623.1 vs. uniprot
Match: A0A6H5JL51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL51_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.290e-15
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:  349 DACDMPAAGLLDMSGKCAAMKARLGSNSKRCPAEVQRLTELLSPLFSMWANIKSVIRNS 525
            DA D  AAGLLDMSGKCAA KA L SN++RCPAEV+R+++LLS L SM ANIK V R++
Sbjct:    2 DAYDFLAAGLLDMSGKCAATKATLASNTQRCPAEVERISKLLSALLSMSANIKRVTRDA 60
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13520.2623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LM82_ECTSI1.190e-8074.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK84_ECTSI8.620e-3055.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKA1_ECTSI5.030e-2952.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL51_9PHAE6.290e-1567.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13520contigE-fasciculatus_F_contig13520:161..2409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_005730.1
Exons4
Model size639
Cds size639
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13520.2623.1prot_E-fasciculatus_F_contig13520.2623.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13520 161..2409 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927850.161708-CDS-E-fasciculatus_F_contig13520:160..2811622927850.161708-CDS-E-fasciculatus_F_contig13520:160..281Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13520 161..281 -
1695995722.3627753-CDS-E-fasciculatus_F_contig13520:160..2811695995722.3627753-CDS-E-fasciculatus_F_contig13520:160..281Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13520 161..281 -
1622927850.1832166-CDS-E-fasciculatus_F_contig13520:695..10151622927850.1832166-CDS-E-fasciculatus_F_contig13520:695..1015Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13520 696..1015 -
1695995722.3708243-CDS-E-fasciculatus_F_contig13520:695..10151695995722.3708243-CDS-E-fasciculatus_F_contig13520:695..1015Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13520 696..1015 -
1622927850.1971896-CDS-E-fasciculatus_F_contig13520:1645..18011622927850.1971896-CDS-E-fasciculatus_F_contig13520:1645..1801Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13520 1646..1801 -
1695995722.3792908-CDS-E-fasciculatus_F_contig13520:1645..18011695995722.3792908-CDS-E-fasciculatus_F_contig13520:1645..1801Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13520 1646..1801 -
1622927850.2103934-CDS-E-fasciculatus_F_contig13520:2367..24091622927850.2103934-CDS-E-fasciculatus_F_contig13520:2367..2409Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13520 2368..2409 -
1695995722.3902037-CDS-E-fasciculatus_F_contig13520:2367..24091695995722.3902037-CDS-E-fasciculatus_F_contig13520:2367..2409Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13520 2368..2409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13520.2623.1

>prot_E-fasciculatus_F_contig13520.2623.1 ID=prot_E-fasciculatus_F_contig13520.2623.1|Name=mRNA_E-fasciculatus_F_contig13520.2623.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=213bp
KLPPRSPRQAHQDKKNMNDITSSLFLGDDAQEGHFGGAFPSPRALPRSST
DGAAVARLPPPKATKTVATMVSKRATPVCAFPPPPPSTITHLPISKAGRS
IAANIVQRLRTAIDTRDACDMPAAGLLDMSGKCAAMKARLGSNSKRCPAE
VQRLTELLSPLFSMWANIKSVIRNSNEWVSPRDQKEAMDLFGLHLAHCYA
LLRVVKNSVSVDS
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mRNA from alignment at E-fasciculatus_F_contig13520:161..2409-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13520.2623.1 ID=mRNA_E-fasciculatus_F_contig13520.2623.1|Name=mRNA_E-fasciculatus_F_contig13520.2623.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2249bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13520:161..2409- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGCTACCACCACGCTCTCCAAGACAGGCACATCAGGACAAGGTGGGGCG
CTAAGAATCGAATTTGAGTTGGACCAGGTTGTTCACAAGAAGGCTGCTGC
TTTTACAGCGTATCATGATCGTGACCAAAACCTCTGACTGCTGTCTACTG
TAGTCTTGTGTGTGTGGGATGCGGATCTTGGCAGGTAGTATGTAGATACA
CCATGTAGCCATCTCTCTCTCGCCTCGCCTGAGATGATCTCGTGGAAAAG
AAGTAGTCACGTTCATATGAAGGGAGCATTCCTCGTGCCTAGGGCCTGCT
CGCCTTGTCGTGCTCGTTGAGTCATACCCTGATTGAGCCTGCTACTACTC
TCTTGCTTGCACGTACGCTAGACAGATGTTACCGATAGATCACCCGAAAC
TTGGGTTTCCGCCCAATAACAGCGGGTATGATGACGAGGCTCGTCTATCA
CTTTTAGTCTGTCGTAAGCTTCGATTGGGTGGCTCCACATATCCTCCGGG
GGGCTTCACCAACCAAGACGTCCACATGACGTTCAGTCCTTCGCCCCCTG
TTCTTCGCCCTCTGTTTTCGGTCCGGATCAAACGGAACAGCTTTTTTTTC
AGTGACAGAAAAACATGAACGATATCACGTCGAGCCTCTTCTTGGGGGAT
GACGCCCAAGAGGGGCACTTCGGGGGGGCGTTCCCGTCACCTCGCGCCCT
TCCACGCTCGTCAACAGATGGAGCGGCGGTTGCTCGATTACCACCACCAA
AGGCAACAAAAACGGTGAGAAGTCTACTTCAATTATTGTGGGCGTATCTA
CTGTAGATATGAACAGCCTACCGCATAGATCTCCCGAAATATGGGTTTAT
TCTCCGCCCGACAACAGCGGGTAAACGAGACTTGTCTCTCAATGATAGTC
TGTGGTGAGCTTCGATTGGATGTCTCCATCCAGTACCTCCGGAGCCCTCA
CCAGTATGTCCACAACAATGCGATCTCGCCAATACCACACCATGTATGGA
CATAGATAGCAAGATCGCATATCTGTGTTGTACAGTAGTACTCTCGACCT
CCTTGACACCGTGAGCATGCCTCAGGAGTCCATTTCGGCTTGCTCGTCAG
GCCAACAAGATCCGTGGACTGTATTCCCTGCTGCGGACCGGCCTCGCACA
ACCCGACTCTCTCTGAGGACTTCAAGTGATACCGTTATCTCCATTGTGTC
CCTACATAGTCGCTACATCGCCCCGATGAACTGACCCAATGGAACACCAA
ATACACCGTAGCCTGGGTGCAATGAAGATACCTCTTCTGTGAAGTACCAT
GCAATGGGTTTGTGGCTGCTTGTTGATTGATCGTGTCTCGTGACGCTTTT
CACAACGAATGCCCCCCGCTCCCCGTCCCCTGAACGACGACCAGGTCGCC
ACCATGGTATCCAAGCGAGCAACGCCGGTGTGCGCATTTCCCCCACCGCC
ACCATCGACCATCACCCACCTGCCAATCAGCAAGGCCGGGAGGAGCATTG
CGGCAAACATCGTCCAGCGTCTGCGGACGGCCATCGACACGCGCGATGCG
TGCGACATGCCGGCGGCCGGCTTGCTGGACATGTCCGGCAAGTGCGCGGC
GATGAAGGCAAGATTGGGCAGCAACAGCAAGCGCTGCCCGGCCGAAGTAC
AGCGCCTGACGGAGCTGCTGTCGCCTCTGTTCTCCATGTGGGCGAACATC
AAGAGTGTGATCCGGTGAGTTGTGTGCTGATGTGTTGGCTTGGTCGACCG
GGGATTGTGGAATGGGATGTAGTCTGTTGTATCATTCAGTAGGTCGAACG
AGAGGACGTGTGTTGTGAAGAGTGCGATGAGGGTGGGTCAAGCCCACGTG
TATTCCATTCAGTGCCCATTCATTGCACAATCAATCGCGGCATTGATGAT
TTCGCCACGATTCTTGCAACGTATTTACCTACTTCGTAGCTGTTGTGGAG
TGTGGTGAGATTTATCATGAGATGCTACATTTGTTCTTCCTCTCATCCCT
CAACAATGAAGAATTCAACCATTCATTTAAATCTGAATTCGCCCAGTCCC
GACGAAATTGGTTGGGGTATCAATTACCAACCCTCCGCCCTGCTGCCATC
ATGTTCCACCTTCTTCGCGCACCGTCAGCAACTCGAACGAATGGGTCTCT
CCCAGGGACCAGAAGGAGGCCATGGACCTCTTCGGGCTCCATCTCGCACA
CTGCTACGCACTCCTCCGCGTAGTCAAGAATTCGGTGAGTGTGGACTCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13520:161..2409-

>mRNA_E-fasciculatus_F_contig13520.2623.1 ID=mRNA_E-fasciculatus_F_contig13520.2623.1|Name=mRNA_E-fasciculatus_F_contig13520.2623.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1278bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13520:161..2409- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGCTACCACCACGCTCTCCAAGACAGGCACATCAGGACAAGAAGCTACC
ACCACGCTCTCCAAGACAGGCACATCAGGACAAGAAAAACATGAACGATA
TCACGTCGAGCCTCTTCTTGGGGGATGACGCCCAAGAGGGGCACTTCGGG
GGGGCGTTCCCGTCACCTCGCGCCCTTCCACGCTCGTCAACAGATGGAGC
GGCGGTTGCTCGATTACCACCACCAAAGGCAACAAAAACGAAAAACATGA
ACGATATCACGTCGAGCCTCTTCTTGGGGGATGACGCCCAAGAGGGGCAC
TTCGGGGGGGCGTTCCCGTCACCTCGCGCCCTTCCACGCTCGTCAACAGA
TGGAGCGGCGGTTGCTCGATTACCACCACCAAAGGCAACAAAAACGGTCG
CCACCATGGTATCCAAGCGAGCAACGCCGGTGTGCGCATTTCCCCCACCG
CCACCATCGACCATCACCCACCTGCCAATCAGCAAGGCCGGGAGGAGCAT
TGCGGCAAACATCGTCCAGCGTCTGCGGACGGCCATCGACACGCGCGATG
CGTGCGACATGCCGGCGGCCGGCTTGCTGGACATGTCCGGCAAGTGCGCG
GCGATGAAGGCAAGATTGGGCAGCAACAGCAAGCGCTGCCCGGCCGAAGT
ACAGCGCCTGACGGAGCTGCTGTCGCCTCTGTTCTCCATGTGGGCGAACA
TCAAGAGTGTGATCCGGTCGCCACCATGGTATCCAAGCGAGCAACGCCGG
TGTGCGCATTTCCCCCACCGCCACCATCGACCATCACCCACCTGCCAATC
AGCAAGGCCGGGAGGAGCATTGCGGCAAACATCGTCCAGCGTCTGCGGAC
GGCCATCGACACGCGCGATGCGTGCGACATGCCGGCGGCCGGCTTGCTGG
ACATGTCCGGCAAGTGCGCGGCGATGAAGGCAAGATTGGGCAGCAACAGC
AAGCGCTGCCCGGCCGAAGTACAGCGCCTGACGGAGCTGCTGTCGCCTCT
GTTCTCCATGTGGGCGAACATCAAGAGTGTGATCCGCAACTCGAACGAAT
GGGTCTCTCCCAGGGACCAGAAGGAGGCCATGGACCTCTTCGGGCTCCAT
CTCGCACACTGCTACGCACTCCTCCGCGTAGTCAAGAATTCGGTGAGTGT
GGACTCACAACTCGAACGAATGGGTCTCTCCCAGGGACCAGAAGGAGGCC
ATGGACCTCTTCGGGCTCCATCTCGCACACTGCTACGCACTCCTCCGCGT
AGTCAAGAATTCGGTGAGTGTGGACTCA
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