mRNA_E-fasciculatus_F_contig1352.2622.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1352.2622.1
Unique NamemRNA_E-fasciculatus_F_contig1352.2622.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1352.2622.1 vs. uniprot
Match: A0A6H5KH15_9PHAE (Arrestin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH15_9PHAE)

HSP 1 Score: 677 bits (1746), Expect = 9.570e-231
Identity = 350/389 (89.97%), Postives = 363/389 (93.32%), Query Frame = 2
Query:  200 MGIEIDISTRQSTCFPGDVIQGTVRLNVTAKDAGSPAGSLVIRLVGLAKTRAMFIATGVVPTASGAAPYTYRDTLSEDAEFLGHDVQLADFGGRVASGEHTYDFSVKLPPSLPASMKEQGGEGSCAIAYGFRVRLHRPGMLNFDAKGKVQLKVLGTPQETSASPPVVAGPEVRAVKKCYCLQSGSMSLGFQADRSVVGLHESVGVTVVVRNDSSVAVKKLRIELVQETSWTAQGAGDVSTRVVKSVVVPGAELGAIQFGGQQGRSAAAIADTARADLEEQLAAGAGTRYELVVPADASITLNSETIQVRHVLTVRIQGPRCVECPDVWTPLHVQPGTSSVVPKVQAETWSSLAPSSTAPPVTVTVPPSAVKLAYNHEMPRTSGAVGKYF 1366
            MGIE+DISTRQSTCFPGDVIQGTVRLNVTAKDAGSPAGSLVIRLVGLAKTRAMFIATGVVPT SGAAPYTYRD LSED EFLG+DVQLADFGG+ ASGEHTYDFSV LPPSLPASMKEQGG GSCAIAYGFR RLHRPG+LNFDAKGKVQLKVLG P+ETSAS PVVAGP V+AVKKCYCLQSGSMSLGFQADRSVVGL+ESVGV VV RNDSSVAVK LR+ELVQETSWTA GAGDVSTRVVKSVVVPGAELGA +FGGQ+G+SAAAIADTARADLE QLA+GAGTR+EL VPAD SITLNSETIQVRHVLTVRIQGPRCVECPDVWT LHVQPGTS VVPKV  ET SSLAPSSTA PVTVTVPPSAVKLAYNHE PRTSG VGKYF
Sbjct:    1 MGIELDISTRQSTCFPGDVIQGTVRLNVTAKDAGSPAGSLVIRLVGLAKTRAMFIATGVVPTTSGAAPYTYRDMLSEDVEFLGYDVQLADFGGKAASGEHTYDFSVTLPPSLPASMKEQGGNGSCAIAYGFRARLHRPGLLNFDAKGKVQLKVLGKPEETSASSPVVAGPAVKAVKKCYCLQSGSMSLGFQADRSVVGLNESVGVIVVARNDSSVAVKNLRVELVQETSWTANGAGDVSTRVVKSVVVPGAELGAAEFGGQRGQSAAAIADTARADLERQLASGAGTRHELTVPADTSITLNSETIQVRHVLTVRIQGPRCVECPDVWTSLHVQPGTSGVVPKVHEET-SSLAPSSTARPVTVTVPPSAVKLAYNHEQPRTSGTVGKYF 388          
BLAST of mRNA_E-fasciculatus_F_contig1352.2622.1 vs. uniprot
Match: D7FWP6_ECTSI (Arrestin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP6_ECTSI)

HSP 1 Score: 600 bits (1548), Expect = 4.010e-201
Identity = 331/418 (79.19%), Postives = 339/418 (81.10%), Query Frame = 2
Query:  200 MGIEIDISTRQSTCFPGDVIQGTVRLNVTAKDAGSPAGSLVIRLVGLAKTRAMFIATGVVPTASGAAPYTYRDTLSEDAEFLGHDVQLADFGGRVASGEHTYDFSVKLPPSLPASMKEQGGEGSCAIAYGFRVRLHRPGMLNFDAKGKVQLKVLGTPQETSASPPVVAGPEVRAVKKCYCLQSGS-----------------------------MSLGFQADRSVVGLHESVGVTVVVRNDSSVAVKKLRIELVQETSWTAQGAGDVSTRVVKSVVVPGAELGAIQFGGQQGRSAAAIADTARADLEEQLAAGAGTRYELVVPADASITLNSETIQVRHVLTVRIQGPRCVECPDVWTPLHVQPGTSSVVPKVQAETWSSLAPSSTAPPVTVTVPPSAVKLAYNHEMPRTSGAVGKYF 1366
            MGIEIDISTRQSTCFPGDVIQGTVRLNVTAKDAGSPAGSLVIRLVGLAKTRAMF ATGVVPT SGAAPYTYRDTLSED EFLG+DVQLADFGGR ASGEHTYDFSV LPPSLPASMKEQGG GSCAIAYGFR RLHRPG+LNFDAKGKVQLKVLG PQETSAS PVVAGPEV AVKKCYCLQSGS                             MSLGFQADRSVVGL+ESVG+TVV RNDSSVAVK LRIELVQETSWTA GAGDVSTR VKSVVVPGAELGA++FGGQ+GRSAAAIADTARADLE QLA+GAGTRYEL VPAD SITLNSETIQ                           PGTS VVPKV  ET SSLAPSSTA PVTVTVPPSAVKLAYNHE PRTSGAVGKYF
Sbjct:    1 MGIEIDISTRQSTCFPGDVIQGTVRLNVTAKDAGSPAGSLVIRLVGLAKTRAMFTATGVVPTESGAAPYTYRDTLSEDVEFLGYDVQLADFGGRAASGEHTYDFSVTLPPSLPASMKEQGGGGSCAIAYGFRARLHRPGLLNFDAKGKVQLKVLGKPQETSASSPVVAGPEVMAVKKCYCLQSGSCVAESRSTMDLGHRHARWQHGAPTNSHESMSLGFQADRSVVGLNESVGITVVARNDSSVAVKNLRIELVQETSWTANGAGDVSTRAVKSVVVPGAELGAVEFGGQRGRSAAAIADTARADLESQLASGAGTRYELTVPADTSITLNSETIQ---------------------------PGTSGVVPKVHEET-SSLAPSSTARPVTVTVPPSAVKLAYNHEQPRTSGAVGKYF 390          
BLAST of mRNA_E-fasciculatus_F_contig1352.2622.1 vs. uniprot
Match: D7FWP5_ECTSI (Arrestin_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP5_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 4.680e-116
Identity = 194/349 (55.59%), Postives = 249/349 (71.35%), Query Frame = 2
Query:  200 MGIEIDISTRQSTCFPGDVIQGTVRLNVTAK-DAGSPAGSLVIRLVGLAKTRAMFIATGVVPTASGAAPYTYRDTLSEDAEFLGHDVQLADFGGRVASGEHTYDFSVKLPPSLPASMKEQGGEG-SCAIAYGFRVRLHRPGMLNFDAKGKVQLKVLGTPQETSASPPVVAGPEVRAVKKCYCLQSGSMSLGFQADRSVVGLHESVGVTVVVRNDSSVAVKKLRIELVQETSWTAQGAGDVSTRVVKSVVVPGAELGAIQFGGQQGRSAAAIADTARADLEEQLAAGAGTRYELVVPADASITLNSETIQVRHVLTVRIQGPRCVECPDVWTPLHVQPGTSSVVPKVQAE 1240
            MGI+I ISTRQ  C+ GDVI+G V LNV+AK + GS A  LV+RL G+AKTR M+  T +    S A  YT+R+ L+E  EFL +DVQLA FGG+ ASG H++ F V LPP LP SM+E G +G SC I YGF  RLHRPGML+FDAKGK +L VL  P E  A+ PV+ GP  + VKK  C +SGSMS+GFQAD S VGL+E+VG+TVV RNDSS  VK + +E+ Q ++W A+G  +  TR V +VVVPG +L A + G Q+GRS+A IADTARADL+EQL AGAGT Y+L+VP ++ +TL ++ I+V+H L+V ++ P C+  PDVWTPL V  GT+S    V  E
Sbjct:    1 MGIDITISTRQGACYAGDVIEGAVHLNVSAKNEEGSSADELVLRLYGVAKTRVMYDTTNMAHNNSNAQSYTHREMLTEKKEFLSYDVQLAAFGGKAASGSHSFPFQVMLPPGLPPSMEENGSQGGSCEIFYGFEARLHRPGMLHFDAKGKAKLTVLSKPHEAGAATPVLVGPATQTVKKFCCFKSGSMSIGFQADHSEVGLNETVGLTVVARNDSSAEVKTMHVEIKQVSTWFARGYKESKTRTVAAVVVPGTQLRASEKGNQRGRSSAVIADTARADLQEQLGAGAGTHYDLLVPGNSLLTLQADLIEVKHTLSVMLKTPHCISSPDVWTPLLVHAGTTSAPDGVSGE 349          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1352.2622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KH15_9PHAE9.570e-23189.97Arrestin_C domain-containing protein n=1 Tax=Ectoc... [more]
D7FWP6_ECTSI4.010e-20179.19Arrestin_N domain-containing protein n=1 Tax=Ectoc... [more]
D7FWP5_ECTSI4.680e-11655.59Arrestin_N domain-containing protein n=2 Tax=Ectoc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1352contigE-fasciculatus_F_contig1352:7666..15703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue3.8e-08
Seed eggNOG ortholog35128.Thaps10064
EggNOG OGs2E7WV@1,2SEF1@2759,2XDV5@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionImmunoglobulin E-set
Ec32 orthologEc-06_001440.1
Exons5
Model size3937
Cds size1170
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927850.0113928-UTR-E-fasciculatus_F_contig1352:7665..77481622927850.0113928-UTR-E-fasciculatus_F_contig1352:7665..7748Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1352 7666..7748 +
1695995722.298912-UTR-E-fasciculatus_F_contig1352:7665..77481695995722.298912-UTR-E-fasciculatus_F_contig1352:7665..7748Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1352 7666..7748 +
1622927850.027219-UTR-E-fasciculatus_F_contig1352:9260..93761622927850.027219-UTR-E-fasciculatus_F_contig1352:9260..9376Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1352 9261..9376 +
1695995722.3082557-UTR-E-fasciculatus_F_contig1352:9260..93761695995722.3082557-UTR-E-fasciculatus_F_contig1352:9260..9376Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1352 9261..9376 +
1622927850.1185718-UTR-E-fasciculatus_F_contig1352:13135..157031622927850.1185718-UTR-E-fasciculatus_F_contig1352:13135..15703Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1352 13136..15703 +
1695995722.3487554-UTR-E-fasciculatus_F_contig1352:13135..157031695995722.3487554-UTR-E-fasciculatus_F_contig1352:13135..15703Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1352 13136..15703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927850.0441191-CDS-E-fasciculatus_F_contig1352:9376..94661622927850.0441191-CDS-E-fasciculatus_F_contig1352:9376..9466Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1352 9377..9466 +
1695995722.3158753-CDS-E-fasciculatus_F_contig1352:9376..94661695995722.3158753-CDS-E-fasciculatus_F_contig1352:9376..9466Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1352 9377..9466 +
1622927850.0568523-CDS-E-fasciculatus_F_contig1352:11394..116551622927850.0568523-CDS-E-fasciculatus_F_contig1352:11394..11655Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1352 11395..11655 +
1695995722.3240128-CDS-E-fasciculatus_F_contig1352:11394..116551695995722.3240128-CDS-E-fasciculatus_F_contig1352:11394..11655Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1352 11395..11655 +
1622927850.0830715-CDS-E-fasciculatus_F_contig1352:11878..120811622927850.0830715-CDS-E-fasciculatus_F_contig1352:11878..12081Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1352 11879..12081 +
1695995722.3321214-CDS-E-fasciculatus_F_contig1352:11878..120811695995722.3321214-CDS-E-fasciculatus_F_contig1352:11878..12081Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1352 11879..12081 +
1622927850.0991025-CDS-E-fasciculatus_F_contig1352:12519..131351622927850.0991025-CDS-E-fasciculatus_F_contig1352:12519..13135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1352 12520..13135 +
1695995722.3401246-CDS-E-fasciculatus_F_contig1352:12519..131351695995722.3401246-CDS-E-fasciculatus_F_contig1352:12519..13135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1352 12520..13135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1352.2622.1prot_E-fasciculatus_F_contig1352.2622.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1352 9377..13135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1352.2622.1

>prot_E-fasciculatus_F_contig1352.2622.1 ID=prot_E-fasciculatus_F_contig1352.2622.1|Name=mRNA_E-fasciculatus_F_contig1352.2622.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=390bp
MGIEIDISTRQSTCFPGDVIQGTVRLNVTAKDAGSPAGSLVIRLVGLAKT
RAMFIATGVVPTASGAAPYTYRDTLSEDAEFLGHDVQLADFGGRVASGEH
TYDFSVKLPPSLPASMKEQGGEGSCAIAYGFRVRLHRPGMLNFDAKGKVQ
LKVLGTPQETSASPPVVAGPEVRAVKKCYCLQSGSMSLGFQADRSVVGLH
ESVGVTVVVRNDSSVAVKKLRIELVQETSWTAQGAGDVSTRVVKSVVVPG
AELGAIQFGGQQGRSAAAIADTARADLEEQLAAGAGTRYELVVPADASIT
LNSETIQVRHVLTVRIQGPRCVECPDVWTPLHVQPGTSSVVPKVQAETWS
SLAPSSTAPPVTVTVPPSAVKLAYNHEMPRTSGAVGKYF*
back to top

mRNA from alignment at E-fasciculatus_F_contig1352:7666..15703+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1352.2622.1 ID=mRNA_E-fasciculatus_F_contig1352.2622.1|Name=mRNA_E-fasciculatus_F_contig1352.2622.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=8038bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1352:7666..15703+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGAAAGGGCGCGCGCACGAGCGACAGAAAGAGGGAGCGCGGAGGACATT GCACTACCCTTCGTCTGCGAGGCCGCATCCAAGGTATTGCTGTTGTTTTA GACTTTTCGCTAGCTAAGCCGCCTTTGCTGGGCAAAAACGGCCACTACCT ACAAGCTGTAGCTGTTTACCTCGCAGCACCCCCCCCGCTGATGGTGCAGC GAGCGTGTGCGCAAAGATCTAGAAGTACGTTCTCGTGGACTGCTAGCAAA ACTTTTCGTTTTGTTTTCATGTTCCGGTGCGCCAAAGTGCGCCTCGTATA TTGACACGCGGTCGGTTGCCTTGCCATGGGTCGGCGTTCAGCGGGTGCGA GAGCCCGGTCGGCGAGAACCTGGCATATTGGCATGGAATACTCCGCTGTT AGTCTAGATAGACGTCACGGTGTGGGAACAACTCTGTAGGAACGCATGTT GGTTTCACTACGCTGTAGTTTTCGAATGGAGCATACGAGTATCATGGGCC GGTGCAACCCGTTGACGAATGCACAATACACGCGCCTATCATGCAGCTGG GTACAAGGAGAGCTACGTAGACGTCATGTCTCTACAGATTTTATGGTGAC AGGACTTTCAGAATGGAAGAAGCGTTCCTGGGACCAGTCCTGGATCCTGA ATGCCAAATGCCAAATGTCCACGTCTCAGAATTACATCTCAGAATTACTT CTCACTCAGTGGACAAAGACACAGCGGTAGGTAGTTTGTAATGACGACGG CCACCGCAGTGCTTTCGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG ATAACCGGCGCCATTCCTCTCTGTCTCTCCTTCAAAACGCAAGTCACACC AGCATTTGGGACCAAACTTGGAAAGATCAGACGAACCAGGGTCCATTCAA TAGACTAATGCTTATATTTCCTTTTTGACTTGACCTGGCCTACAGTTGTA TCGAGGAGCGGCGGGCTTTCTCTGACTGTGTACCGGTATCCTTTTGTCAA TCTCGCTTGTCCGACATGTCACCTGCGAAGAATTCTCTGCCAGTGGGGAT GTCCGTGTTGCCAGTGGGGATGTCCGTGTTAGGCGTTCGTGGTGGTCTGT CTCCATTTTTTTTTTTTTCTTTCCTAATACAACACAACGAGTCCATCTCC ATCAGAGAAAAGAGTCAAAGANNNNNNNNNNAGACAGATTAGCAATGGAA TCATAGCGTCAAAGAAAACTACCTGTATGTCCACGATTTCCCAGACAGCA TTTGTTTTCTCTTTTCTATTCGTAGCACGTACGTACCCAATTGTTGGGTA GCCACGCCACGAAAGGCGCCCGCGTCAAATACGGATGTAGGACTGTACGG TAGTACACTGAGAGCGGAGATCCGAACGAATTTTAATAAAAGTTACAACG ATATATGAAGTCTACAACAACGAACGTTGATTCTTTGTCCGTCCGGTAGA TTGATTGTGTCTTTTCTTGGGAAGAAGGAACACGAGGAACAAGTAAAAAG CACCCCAAAAACCACCGAGTTACACCTATCCTCCGACCATTTCGCCGCGC CCTGTCGTACGCATACGTCATTGGCTGTGCGTCTTCCGGCCTCAGCCTTG TACTTGCTGGACGTGGCGTCAGCCCGCTTCGTGTGGCCGCGTTCTTCCTA TCCTTTTGCCACGTTAGGAGCACCTTCCACCAACCAAAGAGAAGAAGCGT TCGAGCTGACCATGGGCATCGAAATCGATATTTCAACCCGGCAAAGCACC TGTTTCCCTGGAGATGTCATTCAAGGCACGGTACGCCTGAACGTGACCGC GGTGAGTGATCGTCTCTCTCTGCTTCCTCGGCATCATCTTTTCCCTGATG ATGGGGGTTGTGACTGCGAGGTTTTGTGTGTTGCTGGGATGGATGTAGTT ACGAATGCACTTGGTGTAGTCCACGCGTGAGACAGGTCACACGATAGAGT GCAGCATGACGCCTCGCCGTGTATATATCTTCGTCTATAAACGAGCTGTC TACACGCGGAGTTCCTTCTGGGGTGCGCGGTCCTTGTTCGATTTTTCCGC TGTTCCTCAACACTCGATTTCTACAATGTGTGTTAACCAAGCCCAATCGA ATCTCGGAGAGTTGTTCAGAGTTGAAAAAAGTTTATCGTGAGCGTTGGGT AGAACGATTCCCACGGGTCCACTTTAAGACCGATTGTCTGACGCAAGCCC GGATTCGAAAAAGGTAGAAATGATCCGGCTTTGGATGAATCGGAACCAAA GTTGGCGAAACGCGGTCTGTACTTCATTTCTTCACCATCTCACTCTGTCT CTAGCACATATGGGGCCATTTGGATTCAGATTTCGACAGATTCGACTCTT CAATATTCAAAGTGAAGCACAAATCGGTATTCGATTTCTTCCACAAGACA GAGTACCTTTCAGTCGTTCACATGAGAGCTTTGGTTCCAAATTGGAATTT TCGCGTTCTTTGCTGTTTCGAAAACCAGGGGCAACTGCTGTGCACCAGGT ATTTTGTCCCGGAATTCATGGCAACACGCCTCCGCATTAACCGAGATATT CTAGGCCACCGCCCAAGGTGCAACCAGCATATCACGGCGGAGATACTATG CGTGAGAGTATCGTGTGGATCCGTGTGTGCCACCTCTCAGCTGCTCGCAT GCCTTACCGCCCATGGAGTATACGCTATCCCCCAAATGACGGGAGGGTTT TCAGCAGGTAGATTCGGCGGACTTTGAACGAAACGATAATTTTAAGCAAC CCCCAAACTACAAAAGCTGCCTTGTAGTGCGCTCCTTCCCGGCAGTAACC CAAAGGCGACCTTTTTCACCACCTTTCCGCAGCTCGGATGCCTTACACAG CTCGTGGGGTGGGTTTGCTCCACTCGGGTTCCTGCCGAAAGGGAAAGGAC TCTCCAACAGCTTGATTTCAACAATCTACCCTCGACGCCATGTTTCTTTT TGCAACCAACCCCCGAGCCTGTAGAGCGAAAGCGAAACTATCGACGAGCA CAAGGATGTTTTCGCGCGAATTTCTCAGCAGCTTGGTTGGGTGGCTTACA GCTTGTGGGCTGGCTATCTCGCACGGACTCACAATGTGCTCCTTTCGGTT TGCACCCACATGGTGCCATCCTTGCCGCGTAGAGGCGCATCTCAATAGCG CAAGGCTCCACGACGCTTTTTCTGATCGACGACGGCCGTGGAGCGGGCCT AGAGAGTGATCATATCCTAGAAAACACCCATCCACAAGTGACACGGGCTC ACACGAGTCTCTCATTCGGAGTTATACATTTCAAAGTTGAACTGGCCGTC ATTTGAAGAAGGTAATTTTCGAACTTCATGTAGTCACGCCTCGTTCTCCG AGTGGTGAGAGGGGGCAAAGTTCGAAATCCCTGAAGCATGGGCTTTGTAT TTGAAACCGCGACCCGAACCCAGTGGTTATTCTCGAAAGTTGTTCGGTTT AAAGAAAACGTACACTAAAATCCCGTAGATATTTCCGCTACCCTTTTTGA GCAAAACACACGCCAGGTACATTGCTGCGAACTTATTGCACGCTTCTCAC TTTGCCGCTACGGACGACAGTCTCCCTCGGCTATACCTTCAGCTGCTATC TCATTTGTCCCAACAGTCGCCACCAGTCAATTGTTATACACGGAACCATG GCAGGCCAAAGCGATAGCTATTGCTGCTCGGACACTTCAACCTGTTCCAA ATTCTGCCCCCCGCGTCCGCAACTCTCAGAAGGATGCCGGATCGCCAGCG GGTTCTCTCGTGATCCGGTTAGTCGGCCTGGCGAAGACTCGTGCCATGTT CATAGCGACGGGAGTAGTCCCCACCGCAAGTGGTGCGGCTCCGTACACCT ACCGTGACACGCTGAGCGAGGATGCCGAGTTCCTCGGGCACGACGTTCAG CTAGCGGATTTCGGTGGAAGGGTGGCCTCGGGAGAACACACCTACGACTT CTCCGTAAAACTCCCTCCGAGCTTGCCGGCGTCTATGAAGGTGTGATGCA GAGGCTCGAGTAACGTCCTCCTCTTCGCAACGTCAGCGACACCTCCGTCC GTCTTGCGTATTTTTGTTGCTCTGATGGCTCCAGCGCCGCCCCATGCTTC GCGAGGAGCCACTCGCAAGCCGGGTCTCGGTAGTGTCTCGAGTGTATTCG TAATAAATGTTTCAGTCAAACCACTTTGTGAGCGTGTCGTGTTACAAACC TTAACCTTTGCAGGAACAAGGTGGGGAGGGGAGCTGCGCAATCGCGTACG GGTTCAGAGTACGGCTGCACCGCCCAGGGATGCTCAACTTCGATGCCAAG GGAAAGGTGCAGCTGAAGGTGCTGGGCACGCCACAGGAGACCAGTGCCTC TCCGCCGGTAGTGGCGGGGCCAGAAGTAAGGGCGGTGAAGAAGTGCTACT GCTTACAGAGCGGAAGGTGAGTTAGTTGCTCAGCGGTCGCTTTTCTTGTG TCAAGGACATCGTCTCCGTGTCTCGTGCTTTAGCCGGGACGACTCTGAAG CCTCTGCAATAGGCAAGAGGTCAAAATGAATGCAGTCGTGACGGTGGAGG CGCTGTCCGAGGCGTGGACACGGGACCCAAGTTGCCGTGCTCTCCTCTGC AATATGGTACAGTCGTGTGTTGGACAATAGTTGCGCCGCTGACTCTCGGT CGACGATGGACTTGGAGCTCTGCCTCGCCCAGCAGCAGTACGGCGTTCCA ACCAACTCGCGCGAGCCGTGAGTGGGGCCTTGACTTTCCTGTCAGGGCAT GATGCTGGTGTAGACCAGAAATGCTACTGCCAGCGTCTCCGCGTCCCACC CCTCGCACCTGCCTTCCTCCCGCCCCCCCATCCGTCCGGCACGTGCGGCG CCAGCATGAGCTTGGGCTTCCAGGCTGATCGCTCGGTGGTGGGGCTGCAC GAATCGGTGGGTGTCACCGTAGTGGTGCGGAACGACAGCTCGGTGGCCGT GAAAAAACTGCGCATCGAGCTCGTACAGGAGACGTCCTGGACCGCCCAAG GCGCCGGAGACGTCAGCACGCGTGTCGTGAAATCCGTTGTCGTGCCCGGA GCCGAACTGGGGGCCATTCAATTCGGAGGCCAGCAAGGACGAAGCGCGGC TGCAATCGCGGACACGGCTCGGGCGGATCTCGAGGAACAGCTCGCGGCTG GGGCCGGCACTCGCTACGAGCTCGTGGTCCCCGCCGACGCCTCGATCACC CTGAACTCAGAGACGATTCAGGTTAGGCATGTGCTGACCGTGAGGATCCA GGGGCCGCGCTGCGTGGAATGTCCTGACGTTTGGACGCCGCTGCACGTCC AGCCCGGAACCTCCAGCGTGGTACCGAAGGTGCAAGCGGAGACCTGGAGC TCGCTCGCACCGTCTTCAACCGCCCCGCCCGTGACGGTGACGGTCCCGCC AAGCGCGGTCAAGCTGGCTTACAACCACGAAATGCCGCGAACGTCGGGTG CTGTCGGCAAGTACTTCTAGTTGACATATCTTGTACAGATGGATGTCGCG TTGCTACGTTCGGCGGCTGTGGCCGCGGGTGTCTTACGGCAGCAGTGGTG GTCCTGGCAGCTGGGCGAGTCGTTCCGCGTGAACGTTCTATTGCTCAGAC AACGGGGGATCGTGACGGATGTCCCGCTGTTCGGGAGTCCCGACTGGCCA GGCAGCACGCGCGAGCCACGCAGGGGTAGGTGCGTAGAGAGGCACGCCAG TATTTAGGGTGTTTTTGGGGTAGCTGCAGTGTCGCCGCCGCACATGAACG GAAGCTTGCTGCGATGTGTAGCCAAATATTTTTTTCTGCGGACCAGAGCG GGACACTCGGGGGTGGTTGATGTACGGGACCCGGATGGTTGGTTGGACCG GACCACCTCATGTTGTGTTTCCGCTCGACTCAAAGGTTAAGGTTTGCAAT TTAAGAATAGATGTAGATGCCGTCAAACCCGCTATTCTCGCTGCCTCGTC CGGAGAGAGTCCTTTTCAAGGTCTTTCGCCTCTCGCGGCATTGACGCTGC AAAATTGCGGCGTAGCGTGGCGTAGCGTGGCGTCCTTAAGTATTCGGGAG AACGTTGTGCCCCCCTATGTGCAGACTTCACGGATCACCTAGGGCTTTAA CGTGCTTCTGCGTGCGACTTTTTATTGAGTCCGGAGGAAGGACTGCAGTC TTGGGGCAATGCACTAGGCTCTCACCCGTTTCGGTGCATTTTACGGTGTG CTACGGCGAGGCAGCGAGAGGTATGATGAAATTTCCCGGACCTGCTGCCG GTAAGTGTAGCAAGATATGGTCCGATGACAGGAGTTCCCGGCGTAGGACA AGTGATCCTCTCCCTCGTTATGTTGATATTCGTTTTGTCTTGTCAGGTTA TGTTTTTTCGAGTTGAACATGTTTTTTCGAGTTGATACGCGGCTTCTCCT TTTTGTGCCTGCGTACTGCGGGGGTGAGCCTGGCCATCGAGAGCCTGGCG TAGAATACCCCCGCATAGCTTGGGTGTGGGGAAAAGTAACCGTCCTGTCT GTTCGTCGGCGTTGGAACCAAGCATACAGGTATGTATCACGGGTGTCATG TCGACCCCCCTCACGCGTTCCTTGTAGAATGGCGTGGCCGGTTCAACCCC GGCGGTATGTACACCCGGGCCTTGTAGGGGTACAGGGACAGAATCATGCG ACTTTTTTGTAATCATTGACGATGTTTGATTTTTGTTGTTTGTTGTATTT TGTTCGTGCCAAGCAGGGGTGATGGATTCGATTTATTCAAGTACCTGGTT TTTATTTACCTTTGTCTCGTCTGCCCGATATGTCGCTGTCCATGTCTAGC TGTCTGGCCCTTTTTTATGTTTGTTCTCTGGGTTTGCTCCATTTTCGCGT TTGTGCTGATATTTCTGGGCCCCTTTTTGTTTTCTCTGCTGGTGTAAATA GTGTGTACCCTCTGGTAGTTGTCCTTCCTGTCACTCCGCGTCAGTTGAGG CACGGGTGCTCAGTGTTCGGAGCATAGACCCGGAACGATCGGCAGGGTCA TTGAAGGTGTAGAAAAAACAAACTGGTGTACACGGAAGTATTTCGAATTC TCATGGCATTTCGTTCGGACACGTGGACCCGCTTACGAAGCGACCGGTCC CTTCAACGCGAGAAGGAGTTGAGTTCTACCTCACTGTCGTTTAGCGTTCA CAGAGAACGTTAGCGTGCCAGAGGGAGTAGCACAGAGACAACGAGAAAGG TGGACACATAGAACGCTTCTAGGGGATTGCCAGCCTAAGGAGCTGATATT ACTTACGTCTTTCCCCGCGCCCCACCCTTTTTTTACTTCGAAGATAGGAG AAAGGAGAAGCCTGACTTAGTAGCCGGTACAGTTGCCTTCATATGGAGGA AAGAGAACCCTCCGTGACTGCTTGGAGAGACGCGAGACAGTACCTAGTTG TTACGGCCAGAGGGGCAGAGACGCGGTAGAAATGGTGCCGAAAGGTGTCT GTCTGCGGGAAACGTGCTCCGCCTGGTTGATGGACAGCGTCTCTCTTCCC TTGACGTTTTAGAGCAAAGAGAACGAAATCTGTTTGAAAGAAGAGGCAAC CAGTTCTTGTCTGGCGTGGATGTTGATCCATATCTCATGTTGTAAAGAGG TGGGCGGGACGGTGTGCCCTTCAGGTAGGTCAATCTCATCCACCTCGTCT GCACCGGGCTTCGCGCAGAATCCACGTTGTTACCTGTACACGGTCTTGCA AACTCTACACTGAGCAGGAACTTAATTCCGTCTTTAGCACTGCAGCAGAG TTCCGTGGAACGCACGCAATCTCGCGTGTTTCCGCCAAGGTTTCAGACAA GGAACAACGTTTTCGGGGGGGGGGGTGCACAAGCGTGGGCGCTAACGCGT ATATATCCGTGTAGGTCCCTGTCATCAATTCCCTTGCATCGAGGGAAGTC CGCTGCGCCGCTCGCCCTGTGGTCGTAAAAGCTCGTAGCATCGGTAGCAA GCAGGATTGGGGCTTCTTCGTGGCGGAAGAGAGAGAGAGAGAGAGGTTCA ACAGTTTGGTCCTGTACATCCATTTCGGAGAGAGCTGC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1352:7666..15703+

>mRNA_E-fasciculatus_F_contig1352.2622.1 ID=mRNA_E-fasciculatus_F_contig1352.2622.1|Name=mRNA_E-fasciculatus_F_contig1352.2622.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2340bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1352:7666..15703+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCATCGAAATCGATATTTCAACCCGGCAAAGCACCTGTTTCCCTGG
AGATGTCATTCAAGGCACGGTACGCCTGAACGTGACCGCGATGGGCATCG
AAATCGATATTTCAACCCGGCAAAGCACCTGTTTCCCTGGAGATGTCATT
CAAGGCACGGTACGCCTGAACGTGACCGCGAAGGATGCCGGATCGCCAGC
GGGTTCTCTCGTGATCCGGTTAGTCGGCCTGGCGAAGACTCGTGCCATGT
TCATAGCGACGGGAGTAGTCCCCACCGCAAGTGGTGCGGCTCCGTACACC
TACCGTGACACGCTGAGCGAGGATGCCGAGTTCCTCGGGCACGACGTTCA
GCTAGCGGATTTCGGTGGAAGGGTGGCCTCGGGAGAACACACCTACGACT
TCTCCGTAAAACTCCCTCCGAGCTTGCCGGCGTCTATGAAGAAGGATGCC
GGATCGCCAGCGGGTTCTCTCGTGATCCGGTTAGTCGGCCTGGCGAAGAC
TCGTGCCATGTTCATAGCGACGGGAGTAGTCCCCACCGCAAGTGGTGCGG
CTCCGTACACCTACCGTGACACGCTGAGCGAGGATGCCGAGTTCCTCGGG
CACGACGTTCAGCTAGCGGATTTCGGTGGAAGGGTGGCCTCGGGAGAACA
CACCTACGACTTCTCCGTAAAACTCCCTCCGAGCTTGCCGGCGTCTATGA
AGGAACAAGGTGGGGAGGGGAGCTGCGCAATCGCGTACGGGTTCAGAGTA
CGGCTGCACCGCCCAGGGATGCTCAACTTCGATGCCAAGGGAAAGGTGCA
GCTGAAGGTGCTGGGCACGCCACAGGAGACCAGTGCCTCTCCGCCGGTAG
TGGCGGGGCCAGAAGTAAGGGCGGTGAAGAAGTGCTACTGCTTACAGAGC
GGAAGGAACAAGGTGGGGAGGGGAGCTGCGCAATCGCGTACGGGTTCAGA
GTACGGCTGCACCGCCCAGGGATGCTCAACTTCGATGCCAAGGGAAAGGT
GCAGCTGAAGGTGCTGGGCACGCCACAGGAGACCAGTGCCTCTCCGCCGG
TAGTGGCGGGGCCAGAAGTAAGGGCGGTGAAGAAGTGCTACTGCTTACAG
AGCGGAAGCATGAGCTTGGGCTTCCAGGCTGATCGCTCGGTGGTGGGGCT
GCACGAATCGGTGGGTGTCACCGTAGTGGTGCGGAACGACAGCTCGGTGG
CCGTGAAAAAACTGCGCATCGAGCTCGTACAGGAGACGTCCTGGACCGCC
CAAGGCGCCGGAGACGTCAGCACGCGTGTCGTGAAATCCGTTGTCGTGCC
CGGAGCCGAACTGGGGGCCATTCAATTCGGAGGCCAGCAAGGACGAAGCG
CGGCTGCAATCGCGGACACGGCTCGGGCGGATCTCGAGGAACAGCTCGCG
GCTGGGGCCGGCACTCGCTACGAGCTCGTGGTCCCCGCCGACGCCTCGAT
CACCCTGAACTCAGAGACGATTCAGGTTAGGCATGTGCTGACCGTGAGGA
TCCAGGGGCCGCGCTGCGTGGAATGTCCTGACGTTTGGACGCCGCTGCAC
GTCCAGCCCGGAACCTCCAGCGTGGTACCGAAGGTGCAAGCGGAGACCTG
GAGCTCGCTCGCACCGTCTTCAACCGCCCCGCCCGTGACGGTGACGGTCC
CGCCAAGCGCGGTCAAGCTGGCTTACAACCACGAAATGCCGCGAACGTCG
GGTGCTGTCGGCAAGTACTTCTAGCATGAGCTTGGGCTTCCAGGCTGATC
GCTCGGTGGTGGGGCTGCACGAATCGGTGGGTGTCACCGTAGTGGTGCGG
AACGACAGCTCGGTGGCCGTGAAAAAACTGCGCATCGAGCTCGTACAGGA
GACGTCCTGGACCGCCCAAGGCGCCGGAGACGTCAGCACGCGTGTCGTGA
AATCCGTTGTCGTGCCCGGAGCCGAACTGGGGGCCATTCAATTCGGAGGC
CAGCAAGGACGAAGCGCGGCTGCAATCGCGGACACGGCTCGGGCGGATCT
CGAGGAACAGCTCGCGGCTGGGGCCGGCACTCGCTACGAGCTCGTGGTCC
CCGCCGACGCCTCGATCACCCTGAACTCAGAGACGATTCAGGTTAGGCAT
GTGCTGACCGTGAGGATCCAGGGGCCGCGCTGCGTGGAATGTCCTGACGT
TTGGACGCCGCTGCACGTCCAGCCCGGAACCTCCAGCGTGGTACCGAAGG
TGCAAGCGGAGACCTGGAGCTCGCTCGCACCGTCTTCAACCGCCCCGCCC
GTGACGGTGACGGTCCCGCCAAGCGCGGTCAAGCTGGCTTACAACCACGA
AATGCCGCGAACGTCGGGTGCTGTCGGCAAGTACTTCTAG
back to top