mRNA_E-fasciculatus_F_contig1352.2620.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1352.2620.1
Unique NamemRNA_E-fasciculatus_F_contig1352.2620.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1352.2620.1 vs. uniprot
Match: D7FWP4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP4_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.380e-16
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 3 
Query:  189 MVNVPKERRTYCKDKKCCKHTVHKVTQYKSGKASNFAQ 302
            MVNVPKERRTYCKDK+C KHTVHKVTQYKSGKASNFAQ
Sbjct:   35 MVNVPKERRTYCKDKRCNKHTVHKVTQYKSGKASNFAQ 72
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BLAST of mRNA_E-fasciculatus_F_contig1352.2620.1 vs. uniprot
Match: A0A7S3NIT2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIT2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.120e-15
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 3 
Query:  189 MVNVPKERRTYCKDKKCCKHTVHKVTQYKSGKASNFAQ 302
            MVNVPKERRTYCK KKC KHTVHKVTQYK+GKASNFAQ
Sbjct:    1 MVNVPKERRTYCKGKKCKKHTVHKVTQYKAGKASNFAQ 38
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BLAST of mRNA_E-fasciculatus_F_contig1352.2620.1 vs. uniprot
Match: A0A835YP36_9STRA (Zinc-binding ribosomal protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP36_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.150e-15
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 3 
Query:  189 MVNVPKERRTYCKDKKCCKHTVHKVTQYKSGKASNFAQ 302
            MVNVPKERRTYCK KKC KHTVHKV+QYKSGKASNFAQ
Sbjct:    1 MVNVPKERRTYCKSKKCGKHTVHKVSQYKSGKASNFAQ 38
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BLAST of mRNA_E-fasciculatus_F_contig1352.2620.1 vs. uniprot
Match: A0A7S3LII2_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LII2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.550e-15
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 3 
Query:  189 MVNVPKERRTYCKDKKCCKHTVHKVTQYKSGKASNFAQ 302
            MVNVPKERRT+CK KKC KHT+HKVTQYK+GKASNFAQ
Sbjct:    1 MVNVPKERRTFCKGKKCLKHTMHKVTQYKAGKASNFAQ 38
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BLAST of mRNA_E-fasciculatus_F_contig1352.2620.1 vs. uniprot
Match: A0A7S1TR78_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TR78_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.450e-15
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 3 
Query:  180 LSMMVNVPKERRTYCKDKKCCKHTVHKVTQYKSGKASNFAQ 302
            +S MVNVPKERR+YCK+KKC  H VHKVTQYKSGKASNFAQ
Sbjct:    8 ISKMVNVPKERRSYCKNKKCKNHQVHKVTQYKSGKASNFAQ 48
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BLAST of mRNA_E-fasciculatus_F_contig1352.2620.1 vs. uniprot
Match: A0A418ASI0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418ASI0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 8.960e-15
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 3 
Query:  174 CLLSMMVNVPKERRTYCKDKKCCKHTVHKVTQYKSGKASNFAQ 302
            C++  MVN+PKERRT+CK KKC KHTVHKVTQYK+GKAS +AQ
Sbjct:   37 CVVEQMVNIPKERRTFCKGKKCRKHTVHKVTQYKAGKASKYAQ 79
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BLAST of mRNA_E-fasciculatus_F_contig1352.2620.1 vs. uniprot
Match: A0A812MGG9_SYMMI (RIM-C protein n=3 Tax=cellular organisms TaxID=131567 RepID=A0A812MGG9_SYMMI)

HSP 1 Score: 72.8 bits (177), Expect = 1.250e-14
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 3 
Query:  189 MVNVPKERRTYCKDKKCCKHTVHKVTQYKSGKASNFAQ 302
            MVNVPKER+T+CK KKC KHT+HKVTQYKSGKASNFAQ
Sbjct:    1 MVNVPKERKTFCKGKKCGKHTLHKVTQYKSGKASNFAQ 38
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BLAST of mRNA_E-fasciculatus_F_contig1352.2620.1 vs. uniprot
Match: A0A7S2UXA0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXA0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.310e-14
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 3 
Query:  189 MVNVPKERRTYCKDKKCCKHTVHKVTQYKSGKASNFAQ 302
            MVNVPKERRTYCK K C KHT+HKVTQYK+GKASNFAQ
Sbjct:    1 MVNVPKERRTYCKAKNCNKHTIHKVTQYKAGKASNFAQ 38
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BLAST of mRNA_E-fasciculatus_F_contig1352.2620.1 vs. uniprot
Match: I6ZGD0_9STRA (Ribosomal protein L44 n=1 Tax=Aurantiochytrium sp. KRS101 TaxID=797128 RepID=I6ZGD0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.860e-14
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 3 
Query:  189 MVNVPKERRTYCKDKKCCKHTVHKVTQYKSGKASNFAQ 302
            MVNVPKERRT+CK K+C KHTVHKVTQYK+GKASNFAQ
Sbjct:    1 MVNVPKERRTFCKGKQCRKHTVHKVTQYKAGKASNFAQ 38
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1352.2620.1 vs. uniprot
Match: F0YGF9_AURAN (RL44_PICJA 60S ribosomal protein L44 n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YGF9_AURAN)

HSP 1 Score: 72.4 bits (176), Expect = 1.860e-14
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 3 
Query:  189 MVNVPKERRTYCKDKKCCKHTVHKVTQYKSGKASNFAQ 302
            MVNVPKER+TYCK KKC KHT HKVTQYK+GKASNFAQ
Sbjct:    1 MVNVPKERKTYCKAKKCRKHTTHKVTQYKAGKASNFAQ 38
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1352.2620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWP4_ECTSI2.380e-1694.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3NIT2_9STRA1.120e-1592.11Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A835YP36_9STRA1.150e-1592.11Zinc-binding ribosomal protein n=1 Tax=Tribonema m... [more]
A0A7S3LII2_9STRA6.550e-1586.84Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S1TR78_9STRA8.450e-1582.93Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A418ASI0_9STRA8.960e-1574.42Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A812MGG9_SYMMI1.250e-1486.84RIM-C protein n=3 Tax=cellular organisms TaxID=131... [more]
A0A7S2UXA0_9STRA1.310e-1486.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
I6ZGD0_9STRA1.860e-1486.84Ribosomal protein L44 n=1 Tax=Aurantiochytrium sp.... [more]
F0YGF9_AURAN1.860e-1486.84RL44_PICJA 60S ribosomal protein L44 n=2 Tax=Pelag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1352contigE-fasciculatus_F_contig1352:343..1640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog2880.D7FWP4
KEGG koko:K02929
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG1631@1,KOG3464@2759
Ec32 ortholog descriptionRibosomal protein L44e
Ec32 orthologEc-06_001420.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size303
Cds size117
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1352.2620.1prot_E-fasciculatus_F_contig1352.2620.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1352 343..1455 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927849.8100057-CDS-E-fasciculatus_F_contig1352:342..4561622927849.8100057-CDS-E-fasciculatus_F_contig1352:342..456Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1352 343..456 -
1695995722.215294-CDS-E-fasciculatus_F_contig1352:342..4561695995722.215294-CDS-E-fasciculatus_F_contig1352:342..456Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1352 343..456 -
1622927849.8250933-CDS-E-fasciculatus_F_contig1352:1452..14551622927849.8250933-CDS-E-fasciculatus_F_contig1352:1452..1455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1352 1453..1455 -
1695995722.227175-CDS-E-fasciculatus_F_contig1352:1452..14551695995722.227175-CDS-E-fasciculatus_F_contig1352:1452..1455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1352 1453..1455 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927849.8413494-UTR-E-fasciculatus_F_contig1352:1455..16401622927849.8413494-UTR-E-fasciculatus_F_contig1352:1455..1640Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1352 1456..1640 -
1695995722.2346704-UTR-E-fasciculatus_F_contig1352:1455..16401695995722.2346704-UTR-E-fasciculatus_F_contig1352:1455..1640Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1352 1456..1640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1352.2620.1

>prot_E-fasciculatus_F_contig1352.2620.1 ID=prot_E-fasciculatus_F_contig1352.2620.1|Name=mRNA_E-fasciculatus_F_contig1352.2620.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=39bp
MMVNVPKERRTYCKDKKCCKHTVHKVTQYKSGKASNFAQ
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mRNA from alignment at E-fasciculatus_F_contig1352:343..1640-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1352.2620.1 ID=mRNA_E-fasciculatus_F_contig1352.2620.1|Name=mRNA_E-fasciculatus_F_contig1352.2620.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1298bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1352:343..1640- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCCCGGTTGTTCGCCCTATCCCATCGGTCAAGGTGAGAGAGATTGTCCT
GGCTGGCGCTGCAAGCTGCTGTGCCAGCGAGCGTGGCCGGAAAGCTTTCG
GCGGAGTGCAGGATTTGGTTGTCTGATGCCCGCGGGTTTTTGAGTGGGTG
GCAAGTCAGGCGGCGCTCAGCGTTGTTTGCTTTCTATGGTGAGAGAGGCA
GGGAGCCGGTAGGCTCTCGTGAGAGGTCATGTTCGTGACAAGAGTGAGCT
TGCGTGTGTTGGTTTTCTGTCCTCTTGCCATATCCATGCGAACGCAAAAT
TGGACTGACTGGCGAGCAAAATAGGCATCGGGACCAAGAGCAGGGAAGGT
GTGGATGGAGGAGGCGCAACAATCTCCCTTTTGTGTAGATAGCAGCGAGA
GGGACAGAGGCAGTCCATGAGGCACACGCATTACCAACCCTAGGAAGCTT
GGCTCCTCCGCCCTCTGCCTGTAACCTTAGCTAGTGTCTCCCGTTTGCTC
TCCACATGCCTGCGGGTGACGTTGTTGAATCTACCGGGCATTGCCAAGTC
CGGTCGTCTGCTGCTGTATGTTGTACAGAGCACCTTTCGGAGAGGTTGCA
GCAAGGCAGGGTCGTCGCTGTGCTGTGTGGCATTGAGTCCGCTGCGGTTT
GAGCGAGAGACTTGCTCGCTATCGACAGCGGCTTTGTTATCGTGGTTTTA
GGACTACTTCCGGGCTTTGTGGACCAAACCCGCATGCATCACACCTCTCC
GCATGCCAGCAAATTCACCGGCACAGTACAGCGGTTCGCTGCTGGCCTGT
TGCTGGTGGTCGGATGGAAGTCGTGATTCCACCGCTGGTTGCCGATGTAC
AACAGCAGTGTCTGTGCATGGATATCGCAAATAGCGAAGGAGATGCTGCT
TTGTGTATAGCTGGAATGGAGTGCAAACGAATGTAGAGTGCAAAGCCTAG
GAGGTAGACAAGAGAATGGGAATGAACATAAAGCCAGAAGGTATGCGAAG
TGGCGTGGATGCAACGTTCATCTTGGCAAAATAGGTTTATCCGCGTATCC
TCTTTTCCGCCATGTAGTCTTGACTTGTCAAGGGCGTCGCCGGCACGTTG
TCTGTTACCGAATATCTCACTCGGTCGTCGAATGCTGTACTCGCGCGCAT
TTTGCCTCTTTCTTTTTGTGCGGGGCGTCCGCAGATGGTGAACGTTCCCA
AGGAGAGGAGGACCTACTGCAAGGACAAGAAGTGCTGTAAGCACACCGTG
CACAAGGTCACCCAGTACAAGTCCGGCAAGGCCTCCAACTTCGCCCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1352:343..1640-

>mRNA_E-fasciculatus_F_contig1352.2620.1 ID=mRNA_E-fasciculatus_F_contig1352.2620.1|Name=mRNA_E-fasciculatus_F_contig1352.2620.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=234bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1352:343..1640- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGATGGTGAACGTTCCCAAGGAGAGGAGGACCTACTGCAAGGACAA
GAAGTGCTGTAAGCACACCGTGCACAAGGTCACCCAGTACAAGTCCGGCA
AGGCCTCCAACTTCGCCCAGATGGTGAACGTTCCCAAGGAGAGGAGGACC
TACTGCAAGGACAAGAAGTGCTGTAAGCACACCGTGCACAAGGTCACCCA
GTACAAGTCCGGCAAGGCCTCCAACTTCGCCCAG
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