mRNA_E-fasciculatus_F_contig13516.2619.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13516.2619.1
Unique NamemRNA_E-fasciculatus_F_contig13516.2619.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13516.2619.1 vs. uniprot
Match: D7FSM8_ECTSI (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSM8_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 6.170e-60
Identity = 91/96 (94.79%), Postives = 93/96 (96.88%), Query Frame = 1 
Query:    1 FRKLGGSCRNHTLRSPRKWPWCCVVQDVVVGKPRVCGLLVTRSFGDFSCKLGGTPGIILPDCEEILELTIEEDWAEVVIASDGVWDVMQTEEMPQV 288
             RKLGGS RN TLRSPRKWPWCCVVQDVVVGKPRVCGLLVTR+FGDFSCKLGGTPGIILPDCEEILELTIEEDWAEVVIASDGVWDVMQTEEMPQ+
Sbjct:  188 IRKLGGSYRNQTLRSPRKWPWCCVVQDVVVGKPRVCGLLVTRAFGDFSCKLGGTPGIILPDCEEILELTIEEDWAEVVIASDGVWDVMQTEEMPQI 283
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13516.2619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSM8_ECTSI6.170e-6094.79PPM-type phosphatase domain-containing protein n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13516contigE-fasciculatus_F_contig13516:2283..3487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.9
Seed ortholog evalue5.8e-49
Seed eggNOG ortholog2880.D7FSM8
KEGG koko:K17506
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-04_000610.1
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons3
Model size312
Cds size312
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13516.2619.1prot_E-fasciculatus_F_contig13516.2619.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13516 2283..3487 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927849.72177-CDS-E-fasciculatus_F_contig13516:2282..24441622927849.72177-CDS-E-fasciculatus_F_contig13516:2282..2444Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13516 2283..2444 -
1695995722.1767633-CDS-E-fasciculatus_F_contig13516:2282..24441695995722.1767633-CDS-E-fasciculatus_F_contig13516:2282..2444Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13516 2283..2444 -
1622927849.7352605-CDS-E-fasciculatus_F_contig13516:3192..33091622927849.7352605-CDS-E-fasciculatus_F_contig13516:3192..3309Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13516 3193..3309 -
1695995722.1952996-CDS-E-fasciculatus_F_contig13516:3192..33091695995722.1952996-CDS-E-fasciculatus_F_contig13516:3192..3309Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13516 3193..3309 -
1622927849.7586353-CDS-E-fasciculatus_F_contig13516:3454..34871622927849.7586353-CDS-E-fasciculatus_F_contig13516:3454..3487Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13516 3455..3487 -
1695995722.2047887-CDS-E-fasciculatus_F_contig13516:3454..34871695995722.2047887-CDS-E-fasciculatus_F_contig13516:3454..3487Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13516 3455..3487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13516.2619.1

>prot_E-fasciculatus_F_contig13516.2619.1 ID=prot_E-fasciculatus_F_contig13516.2619.1|Name=mRNA_E-fasciculatus_F_contig13516.2619.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
FRKLGGSCRNHTLRSPRKWPWCCVVQDVVVGKPRVCGLLVTRSFGDFSCK
LGGTPGIILPDCEEILELTIEEDWAEVVIASDGVWDVMQTEEMPQVGDGL
KPD*
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mRNA from alignment at E-fasciculatus_F_contig13516:2283..3487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13516.2619.1 ID=mRNA_E-fasciculatus_F_contig13516.2619.1|Name=mRNA_E-fasciculatus_F_contig13516.2619.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1205bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13516:2283..3487- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCAGAAAGCTGGGAGGCTCTTGCCGCAACCACGTTATTATTTGTTGTCG
ATGTTTGTTGTTATTGCTGCTGCTGCTGCGATTGCTGCTGCGATTGCTGC
TGATGTTGTTGTCTACAAGCCGTGCTCGACTGTACACCCACCCTAGCAAT
TCCCGTTCATTTTTTTTTTCTTGTTCAGACTCTGAGATCTCCGAGAAAAT
GGCCATGGTGCTGCGTGGTGCAAGATGTGGTCGTCGGCAAGCCGAGGGTG
TGCGGGTTGCTGGTGACGAGGTCGTTTGGCGACTTCTCTTGCAAGGTGCG
GGGTGTTGTCGTTGCTGTTGACGTAAGTTAGTGCTGTTGTTGTGAGTGCT
ATTGATGTTGCTGTTGGTGGTGGTGGTGCTATTGATGTTACTGTTGGTGG
TGGTGTTGCTATTGATGTTGCTGTTGGTGTTGCTATTGATGTTGCTGTTG
GCGGTGGTGTTGCTTTTGATTTTGCTGTTGGCGGTGGTGTTGCTATTGAT
GTTGCTGATGCTACTGCTTTTGTTGTTGCTGTTGACGTGCTTACTGCTGC
TGCTGTTGTTGTTGATGTTGTTGCTGTGCATATTGACATTGTTGTTGTCA
TTTTGCTGTTCTTGCCACGTGATCATACCCATGTTGACGTATTTTTTGCT
TCTCGGGAGCAACCTGTGTTCATGTACGTTGTTGACTTACCTTTGGTTTC
ATGGGAGCAACATTTGTTCAATCGAGCTTTCACGTTAGGGAAGCAATACT
GTCACATTAAGAAAAAGAAAAAAAACATACCATGCCGTTCACTTCGGCGA
GAATGTCTTCCGTTCCATGTTTTTTTCTCGAAAAAGCTGCCCGAGCTGGG
AGGGACGCCCGGCATCATCCTGCAATAAGTACCATCCCGTTCACCTTTGT
GAGAATCTCTTCCGTTCCACGGTTTTCCGTTCCATATTTTTTTCTCGGAA
AAGCTGCCCGGCATCATCCTGTTCACCTTTGTGAGAATCTCTTCCGTTCC
ACGGTTTTCCGTTCCATGTTTTTTCTCGGAAAAGCTGCCCGAGCTGGGAG
GGACGCCCGGCATCATCCTGCCGGACTGCGAAGAGATCTTGGAGCTGACG
ATCGAGGAGGACTGGGCAGAGGTTGTCATCGCCAGCGACGGGGTGTGGGA
CGTGATGCAGACGGAGGAGATGCCGCAGGTGGGGGACGGTCTCAAGCCAG
ACTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13516:2283..3487-

>mRNA_E-fasciculatus_F_contig13516.2619.1 ID=mRNA_E-fasciculatus_F_contig13516.2619.1|Name=mRNA_E-fasciculatus_F_contig13516.2619.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13516:2283..3487- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCAGAAAGCTGGGAGGCTCTTGCCGCAACCACTTCAGAAAGCTGGGAGG
CTCTTGCCGCAACCACACTCTGAGATCTCCGAGAAAATGGCCATGGTGCT
GCGTGGTGCAAGATGTGGTCGTCGGCAAGCCGAGGGTGTGCGGGTTGCTG
GTGACGAGGTCGTTTGGCGACTTCTCTTGCAAGACTCTGAGATCTCCGAG
AAAATGGCCATGGTGCTGCGTGGTGCAAGATGTGGTCGTCGGCAAGCCGA
GGGTGTGCGGGTTGCTGGTGACGAGGTCGTTTGGCGACTTCTCTTGCAAG
CTGGGAGGGACGCCCGGCATCATCCTGCCGGACTGCGAAGAGATCTTGGA
GCTGACGATCGAGGAGGACTGGGCAGAGGTTGTCATCGCCAGCGACGGGG
TGTGGGACGTGATGCAGACGGAGGAGATGCCGCAGGTGGGGGACGGTCTC
AAGCCAGACTAGCTGGGAGGGACGCCCGGCATCATCCTGCCGGACTGCGA
AGAGATCTTGGAGCTGACGATCGAGGAGGACTGGGCAGAGGTTGTCATCG
CCAGCGACGGGGTGTGGGACGTGATGCAGACGGAGGAGATGCCGCAGGTG
GGGGACGGTCTCAAGCCAGACTAG
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