mRNA_E-fasciculatus_F_contig13513.2618.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI) HSP 1 Score: 248 bits (632), Expect = 4.690e-73 Identity = 121/137 (88.32%), Postives = 124/137 (90.51%), Query Frame = 1
Query: 25 QEESIRCICGGAGRDTGDGGEGGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTRELGDEAGSDXXXXXXXGKVDTFEVTDLDVFRQLVLNRLTADDGTSRSAQRS 435
+EE I CICGGAGRDTG GGEGGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQS+DAASHDLT+ELGDEAGSD GKV FEVTDLDVFRQLVLNRLTADDG SRSAQRS
Sbjct: 936 EEERILCICGGAGRDTG-GGEGGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSLDAASHDLTKELGDEAGSDDEGGVGGGKVVAFEVTDLDVFRQLVLNRLTADDGASRSAQRS 1071
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE) HSP 1 Score: 196 bits (499), Expect = 3.320e-55 Identity = 112/165 (67.88%), Postives = 117/165 (70.91%), Query Frame = 1
Query: 16 CLAQEESIRCICGGAGRDT-GDGGE-GGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTRELGDEAGSDXXXXXXXGKVDTFEVTDLDVFRQLVLNRLTADDGTSRSAQRSSSL-----SSSLSSRHGRSVAVR 489
CL + + + GG T G GGE GGVMMLDCDRCHRWFHG CVGITSQEDCPEEWFCVDCTILRQV+AQK AHA RQS E GDEAGSD GK FEVTDLDVFRQLVLNRLTADDG SRSAQRS+ S S SSRHGRSVAVR
Sbjct: 936 CLMAMDVLGRVAGGLADITRGTGGEEGGVMMLDCDRCHRWFHGRCVGITSQEDCPEEWFCVDCTILRQVTAQKRAHANRQST---------EFGDEAGSDDEGAGGGGKTVAFEVTDLDVFRQLVLNRLTADDGASRSAQRSAGSAGLGSSPSSSSRHGRSVAVR 1091
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: B8BTF2_THAPS (Sister chromatid cohesion protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTF2_THAPS) HSP 1 Score: 77.0 bits (188), Expect = 2.340e-13 Identity = 41/99 (41.41%), Postives = 54/99 (54.55%), Query Frame = 1
Query: 1 SRGSGCLAQEESI-RCICGGAGRDTGDGGEGGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKH--AHAKRQSMDAASHDLTREL 288
S SG L +E I +C CG DT M+DCDRCH WFHG C+GIT ++ P+EWFC +CT+ + Q + A+ R+S S D T L
Sbjct: 838 SMSSGQLEPKEEINKCFCGRGNLDT--------FMVDCDRCHSWFHGSCIGIT-KDTVPDEWFCDECTMQTTIMKQANVFANTNRESNKLTSKDHTHAL 927
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: A0A7S3VWS1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3VWS1_EMIHU) HSP 1 Score: 76.6 bits (187), Expect = 2.770e-13 Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = 1
Query: 31 ESIRCICGGAGRDTGDGGEGGVMMLDCDRCHRWFHGHCVGITSQED-CPEEWFCVDCTILRQVSAQK 228
E C+CG G D G MLDCDRCHRWFHG CVGI +QED P EWFC C + R V+ Q+
Sbjct: 153 EDATCVCG-RGYDGG-------FMLDCDRCHRWFHGSCVGIEAQEDDLPSEWFCESCQLSRAVTKQR 211
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: A0A7S4B8G5_CHRCT (Sister chromatid cohesion protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B8G5_CHRCT) HSP 1 Score: 76.3 bits (186), Expect = 4.300e-13 Identity = 49/126 (38.89%), Postives = 63/126 (50.00%), Query Frame = 1
Query: 31 ESIRCICGGAGRDTGDGGEGGVMMLDCDRCHRWFHGHCVGI--TSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTRELGDEAGSDXXXXXXXGKVDTFEVTDLDVFRQLVLNRLTA 402
E CICG G GEG MLDCD+CHRWFHG CVGI TS+ PEEWFC C + V+ Q+ + ++ R GD G D ++ T E +V +QL++N L A
Sbjct: 706 EDASCICG-----EGHKGEG--FMLDCDKCHRWFHGACVGIYPTSEHSVPEEWFCDSCQLSTAVAEQRQRITRLLAL--------RGDGDSNGGDDENSKEIYEMLTSET---EVTKQLLINHLHA 813
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: A0A7S1CNW5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNW5_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 2.990e-12 Identity = 37/73 (50.68%), Postives = 42/73 (57.53%), Query Frame = 1
Query: 58 AGRDTG---DGGEGGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSA-QKHAHAKRQSMDAA 264
AG D G G G MLDCD CHRWFHG CVGI +E PE W+C DC +L QV Q H R++ AA
Sbjct: 38 AGEDDGCICKRGSDGRFMLDCDTCHRWFHGDCVGIR-EEYAPEAWYCDDCVLLHQVKVVQAHIETVRKTAAAA 109
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: A0A7S4RR27_9STRA (Sister chromatid cohesion protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RR27_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.280e-11 Identity = 51/149 (34.23%), Postives = 70/149 (46.98%), Query Frame = 1
Query: 25 QEESIRCICGGAGR-DTGDGGEGGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHA-------HAKRQ-------SMDAASHDLTRELGDEA-GSDXXXXXXXGKVDTFEVTDLDVFRQLVLNRLTADDGTSRS 423
++E C+CG G DT MLDCDRCH WFHG CVG+T ++ P+ W C +CT+ V Q A H KR+ S H ++ D A +D + EV D +FRQL+LN +T T++S
Sbjct: 489 RKEVNGCLCGRTGLVDT--------FMLDCDRCHAWFHGSCVGVT-KDSLPDVWICDECTLQVMVLEQTQAFVERCSNHQKRRVKGTEEDSQKQKRHKKAKQKKDIAQANDVAGDQTEASDNVPEVDDTHIFRQLLLNYMTHLTETTKS 628
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: A0A7S3F1Q1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F1Q1_9EUKA) HSP 1 Score: 67.4 bits (163), Expect = 2.730e-11 Identity = 35/95 (36.84%), Postives = 49/95 (51.58%), Query Frame = 1
Query: 31 ESIRCICGGAGRDTGDGGEGGVMMLDCDRCHRWFHGHCVGI-----TSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSM------DAASHDLTR 282
E RC CG G +TG+ MLDCD CHRWFHG CVG+ TS + P+ WFC +C + + Q+ ++ ++ D H+ TR
Sbjct: 32 EDARCFCG-RGYNTGE------FMLDCDSCHRWFHGVCVGVDTSNDTSDDAMPQSWFCDNCRLSAALKEQRQRISRLLALPESGQSDEEEHEDTR 119
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: A0A7S2UG10_9STRA (Sister chromatid cohesion protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UG10_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 8.000e-11 Identity = 48/124 (38.71%), Postives = 59/124 (47.58%), Query Frame = 1
Query: 31 ESIRCICGGAGR-DTGDGGEGGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTRELGDEAGSDXXXXXXXGKVDTFEVTDLDVFRQLVLNRLT 399
E+ RC CG A DT MLDCDRCH WFHG C GI ++ PE W C +CT+ V Q A A R SH R ++G T +V + +FRQL+LN LT
Sbjct: 569 ETNRCFCGRATLVDT--------FMLDCDRCHNWFHGSCAGIC-KDSLPEVWICNECTMQIMVLEQTKAFATR-----CSH--RRRSAKKSGKSSSAKNCP----TPQVDETHIFRQLLLNHLT 672
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: K0SHJ0_THAOC (Sister chromatid cohesion protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHJ0_THAOC) HSP 1 Score: 68.2 bits (165), Expect = 2.770e-10 Identity = 38/79 (48.10%), Postives = 43/79 (54.43%), Query Frame = 1
Query: 25 QEESIRCICGGAGRDTGDGGEGGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDA 261
+EE RC CG RD MLDCDRCH WFHG CVGIT ++ PE W C DCT+ Q S A A Q D+
Sbjct: 704 KEEVNRCFCG---RDLD------TFMLDCDRCHSWFHGSCVGIT-KDAVPETWVCDDCTL--QGSMLDQAKAFTQGKDS 770 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13513.2618.1 >prot_E-fasciculatus_F_contig13513.2618.1 ID=prot_E-fasciculatus_F_contig13513.2618.1|Name=mRNA_E-fasciculatus_F_contig13513.2618.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=163bp SRGSGCLAQEESIRCICGGAGRDTGDGGEGGVMMLDCDRCHRWFHGHCVGback to top mRNA from alignment at E-fasciculatus_F_contig13513:358..3507+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13513.2618.1 ID=mRNA_E-fasciculatus_F_contig13513.2618.1|Name=mRNA_E-fasciculatus_F_contig13513.2618.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3150bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13513:358..3507+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13513:358..3507+ >mRNA_E-fasciculatus_F_contig13513.2618.1 ID=mRNA_E-fasciculatus_F_contig13513.2618.1|Name=mRNA_E-fasciculatus_F_contig13513.2618.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=978bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13513:358..3507+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |