mRNA_E-fasciculatus_F_contig13513.2618.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13513.2618.1
Unique NamemRNA_E-fasciculatus_F_contig13513.2618.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 4.690e-73
Identity = 121/137 (88.32%), Postives = 124/137 (90.51%), Query Frame = 1
Query:   25 QEESIRCICGGAGRDTGDGGEGGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTRELGDEAGSDXXXXXXXGKVDTFEVTDLDVFRQLVLNRLTADDGTSRSAQRS 435
            +EE I CICGGAGRDTG GGEGGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQS+DAASHDLT+ELGDEAGSD       GKV  FEVTDLDVFRQLVLNRLTADDG SRSAQRS
Sbjct:  936 EEERILCICGGAGRDTG-GGEGGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSLDAASHDLTKELGDEAGSDDEGGVGGGKVVAFEVTDLDVFRQLVLNRLTADDGASRSAQRS 1071          
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 3.320e-55
Identity = 112/165 (67.88%), Postives = 117/165 (70.91%), Query Frame = 1
Query:   16 CLAQEESIRCICGGAGRDT-GDGGE-GGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTRELGDEAGSDXXXXXXXGKVDTFEVTDLDVFRQLVLNRLTADDGTSRSAQRSSSL-----SSSLSSRHGRSVAVR 489
            CL   + +  + GG    T G GGE GGVMMLDCDRCHRWFHG CVGITSQEDCPEEWFCVDCTILRQV+AQK AHA RQS          E GDEAGSD       GK   FEVTDLDVFRQLVLNRLTADDG SRSAQRS+       S S SSRHGRSVAVR
Sbjct:  936 CLMAMDVLGRVAGGLADITRGTGGEEGGVMMLDCDRCHRWFHGRCVGITSQEDCPEEWFCVDCTILRQVTAQKRAHANRQST---------EFGDEAGSDDEGAGGGGKTVAFEVTDLDVFRQLVLNRLTADDGASRSAQRSAGSAGLGSSPSSSSRHGRSVAVR 1091          
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: B8BTF2_THAPS (Sister chromatid cohesion protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTF2_THAPS)

HSP 1 Score: 77.0 bits (188), Expect = 2.340e-13
Identity = 41/99 (41.41%), Postives = 54/99 (54.55%), Query Frame = 1
Query:    1 SRGSGCLAQEESI-RCICGGAGRDTGDGGEGGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKH--AHAKRQSMDAASHDLTREL 288
            S  SG L  +E I +C CG    DT         M+DCDRCH WFHG C+GIT ++  P+EWFC +CT+   +  Q +  A+  R+S    S D T  L
Sbjct:  838 SMSSGQLEPKEEINKCFCGRGNLDT--------FMVDCDRCHSWFHGSCIGIT-KDTVPDEWFCDECTMQTTIMKQANVFANTNRESNKLTSKDHTHAL 927          
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: A0A7S3VWS1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3VWS1_EMIHU)

HSP 1 Score: 76.6 bits (187), Expect = 2.770e-13
Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   31 ESIRCICGGAGRDTGDGGEGGVMMLDCDRCHRWFHGHCVGITSQED-CPEEWFCVDCTILRQVSAQK 228
            E   C+CG  G D G        MLDCDRCHRWFHG CVGI +QED  P EWFC  C + R V+ Q+
Sbjct:  153 EDATCVCG-RGYDGG-------FMLDCDRCHRWFHGSCVGIEAQEDDLPSEWFCESCQLSRAVTKQR 211          
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: A0A7S4B8G5_CHRCT (Sister chromatid cohesion protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B8G5_CHRCT)

HSP 1 Score: 76.3 bits (186), Expect = 4.300e-13
Identity = 49/126 (38.89%), Postives = 63/126 (50.00%), Query Frame = 1
Query:   31 ESIRCICGGAGRDTGDGGEGGVMMLDCDRCHRWFHGHCVGI--TSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTRELGDEAGSDXXXXXXXGKVDTFEVTDLDVFRQLVLNRLTA 402
            E   CICG      G  GEG   MLDCD+CHRWFHG CVGI  TS+   PEEWFC  C +   V+ Q+    +  ++        R  GD  G D        ++ T E    +V +QL++N L A
Sbjct:  706 EDASCICG-----EGHKGEG--FMLDCDKCHRWFHGACVGIYPTSEHSVPEEWFCDSCQLSTAVAEQRQRITRLLAL--------RGDGDSNGGDDENSKEIYEMLTSET---EVTKQLLINHLHA 813          
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: A0A7S1CNW5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNW5_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.990e-12
Identity = 37/73 (50.68%), Postives = 42/73 (57.53%), Query Frame = 1
Query:   58 AGRDTG---DGGEGGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSA-QKHAHAKRQSMDAA 264
            AG D G     G  G  MLDCD CHRWFHG CVGI  +E  PE W+C DC +L QV   Q H    R++  AA
Sbjct:   38 AGEDDGCICKRGSDGRFMLDCDTCHRWFHGDCVGIR-EEYAPEAWYCDDCVLLHQVKVVQAHIETVRKTAAAA 109          
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: A0A7S4RR27_9STRA (Sister chromatid cohesion protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RR27_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.280e-11
Identity = 51/149 (34.23%), Postives = 70/149 (46.98%), Query Frame = 1
Query:   25 QEESIRCICGGAGR-DTGDGGEGGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHA-------HAKRQ-------SMDAASHDLTRELGDEA-GSDXXXXXXXGKVDTFEVTDLDVFRQLVLNRLTADDGTSRS 423
            ++E   C+CG  G  DT         MLDCDRCH WFHG CVG+T ++  P+ W C +CT+   V  Q  A       H KR+       S     H   ++  D A  +D          +  EV D  +FRQL+LN +T    T++S
Sbjct:  489 RKEVNGCLCGRTGLVDT--------FMLDCDRCHAWFHGSCVGVT-KDSLPDVWICDECTLQVMVLEQTQAFVERCSNHQKRRVKGTEEDSQKQKRHKKAKQKKDIAQANDVAGDQTEASDNVPEVDDTHIFRQLLLNYMTHLTETTKS 628          
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: A0A7S3F1Q1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F1Q1_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 2.730e-11
Identity = 35/95 (36.84%), Postives = 49/95 (51.58%), Query Frame = 1
Query:   31 ESIRCICGGAGRDTGDGGEGGVMMLDCDRCHRWFHGHCVGI-----TSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSM------DAASHDLTR 282
            E  RC CG  G +TG+       MLDCD CHRWFHG CVG+     TS +  P+ WFC +C +   +  Q+   ++  ++      D   H+ TR
Sbjct:   32 EDARCFCG-RGYNTGE------FMLDCDSCHRWFHGVCVGVDTSNDTSDDAMPQSWFCDNCRLSAALKEQRQRISRLLALPESGQSDEEEHEDTR 119          
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: A0A7S2UG10_9STRA (Sister chromatid cohesion protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UG10_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 8.000e-11
Identity = 48/124 (38.71%), Postives = 59/124 (47.58%), Query Frame = 1
Query:   31 ESIRCICGGAGR-DTGDGGEGGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTRELGDEAGSDXXXXXXXGKVDTFEVTDLDVFRQLVLNRLT 399
            E+ RC CG A   DT         MLDCDRCH WFHG C GI  ++  PE W C +CT+   V  Q  A A R      SH   R    ++G             T +V +  +FRQL+LN LT
Sbjct:  569 ETNRCFCGRATLVDT--------FMLDCDRCHNWFHGSCAGIC-KDSLPEVWICNECTMQIMVLEQTKAFATR-----CSH--RRRSAKKSGKSSSAKNCP----TPQVDETHIFRQLLLNHLT 672          
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Match: K0SHJ0_THAOC (Sister chromatid cohesion protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHJ0_THAOC)

HSP 1 Score: 68.2 bits (165), Expect = 2.770e-10
Identity = 38/79 (48.10%), Postives = 43/79 (54.43%), Query Frame = 1
Query:   25 QEESIRCICGGAGRDTGDGGEGGVMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDA 261
            +EE  RC CG   RD          MLDCDRCH WFHG CVGIT ++  PE W C DCT+  Q S    A A  Q  D+
Sbjct:  704 KEEVNRCFCG---RDLD------TFMLDCDRCHSWFHGSCVGIT-KDAVPETWVCDDCTL--QGSMLDQAKAFTQGKDS 770          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13513.2618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSV8_ECTSI4.690e-7388.32Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
A0A6H5JLU6_9PHAE3.320e-5567.88PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
B8BTF2_THAPS2.340e-1341.41Sister chromatid cohesion protein n=1 Tax=Thalassi... [more]
A0A7S3VWS1_EMIHU2.770e-1353.73Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S4B8G5_CHRCT4.300e-1338.89Sister chromatid cohesion protein (Fragment) n=1 T... [more]
A0A7S1CNW5_9STRA2.990e-1250.68Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S4RR27_9STRA1.280e-1134.23Sister chromatid cohesion protein n=6 Tax=Ditylum ... [more]
A0A7S3F1Q1_9EUKA2.730e-1136.84Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S2UG10_9STRA8.000e-1138.71Sister chromatid cohesion protein (Fragment) n=1 T... [more]
K0SHJ0_THAOC2.770e-1048.10Sister chromatid cohesion protein n=1 Tax=Thalassi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13513contigE-fasciculatus_F_contig13513:358..3507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score249.2
Seed ortholog evalue1.3e-63
Seed eggNOG ortholog2880.D7FSV8
KEGG koko:K06672
KEGG Pathwayko04111,map04111
EggNOG free text desc.cohesin loading
EggNOG OGsKOG1020@1,KOG1020@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size490
Cds size489
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13513.2618.1prot_E-fasciculatus_F_contig13513.2618.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13513 358..3506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927849.5201433-CDS-E-fasciculatus_F_contig13513:357..5221622927849.5201433-CDS-E-fasciculatus_F_contig13513:357..522Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13513 358..522 +
1695995722.1174815-CDS-E-fasciculatus_F_contig13513:357..5221695995722.1174815-CDS-E-fasciculatus_F_contig13513:357..522Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13513 358..522 +
1622927849.5356565-CDS-E-fasciculatus_F_contig13513:1452..15321622927849.5356565-CDS-E-fasciculatus_F_contig13513:1452..1532Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13513 1453..1532 +
1695995722.1368227-CDS-E-fasciculatus_F_contig13513:1452..15321695995722.1368227-CDS-E-fasciculatus_F_contig13513:1452..1532Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13513 1453..1532 +
1622927849.549281-CDS-E-fasciculatus_F_contig13513:2185..22911622927849.549281-CDS-E-fasciculatus_F_contig13513:2185..2291Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13513 2186..2291 +
1695995722.1542492-CDS-E-fasciculatus_F_contig13513:2185..22911695995722.1542492-CDS-E-fasciculatus_F_contig13513:2185..2291Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13513 2186..2291 +
1622927849.5645258-CDS-E-fasciculatus_F_contig13513:3368..35061622927849.5645258-CDS-E-fasciculatus_F_contig13513:3368..3506Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13513 3369..3506 +
1695995722.165774-CDS-E-fasciculatus_F_contig13513:3368..35061695995722.165774-CDS-E-fasciculatus_F_contig13513:3368..3506Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13513 3369..3506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13513.2618.1

>prot_E-fasciculatus_F_contig13513.2618.1 ID=prot_E-fasciculatus_F_contig13513.2618.1|Name=mRNA_E-fasciculatus_F_contig13513.2618.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=163bp
SRGSGCLAQEESIRCICGGAGRDTGDGGEGGVMMLDCDRCHRWFHGHCVG
ITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTRELGDEA
GSDDEGGGGGGKVDTFEVTDLDVFRQLVLNRLTADDGTSRSAQRSSSLSS
SLSSRHGRSVAVR
back to top

mRNA from alignment at E-fasciculatus_F_contig13513:358..3507+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13513.2618.1 ID=mRNA_E-fasciculatus_F_contig13513.2618.1|Name=mRNA_E-fasciculatus_F_contig13513.2618.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3150bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13513:358..3507+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTCGCGGGTCGGGGTGCTTGGCACAGGAGGAGAGCATCCGGTGCATCTG CGGCGGTGCCGGTAGGGACACGGGGGACGGGGGCGAAGGGGGGGTGATGA TGCTCGACTGCGACCGCTGTCACCGCTGGTTCCACGGCCACTGCGTGGGC ATCACCTCGCAGGAGGTGCGTAGAAGAAAATCTGTCGTGCTGCCTTCTTT CGTTCCCTGGCTACACGTTGCTGGACCGTCTCCTGTCCTGTCTTGTTTTT TTTCTTTTATCTCCAACGCCGCGACTTTTGTCGTCCCCTTGCGGCATCAA TGCCTACCGAACGGAGGCTCGCCCTGTGTGCCGAGGAACCTCAGGCCCGG GGTAACGCGCGTGCTCGCGTGGTTGTTTCGTCGATTGCCATTGTTTTCTT TCTTTGTTTCTGTTGCTTTCGGGCGTCTTGTCATCTCGATGCGTTTTTGT TTTCGCGTGTGTGACGCTCTTGTTTCTTTGTTCTTGTTTGTCGCTGCTAT GCTACATGCGCTATGGCCCAGCGTGTTGTGCTCCGTTTATGTTTTTGGTT TGTCTCTGCTTCACGTTGTCGTGATGGGGCTGGGTCCCCTGCTCTTGTCT GCGTATCTGACTTCGATGTGGTGCCTGACTTCACATACATGTCACCTTTG TTTCCTTGCTTGCGTGTGATACTTGTATGTGATGCGGGTCTCAGCTGCAC TGCATTTTTCGTGCGTTTCGGATACGTTCTTCCTGCAAATCACATCGTTT GTTCTTGAGGCATCGCTTCTCGTAGTATAGGTGCTCGTTTTTTTTTTTTT TTTTCGGTGCGTCTGCTCGACCCTTGTTCTTCTGTTTGAGGCCCTTCCGT CGTACCAAGTTTCTGTGCTTCGTACTTGCGTGCCAACATGGTGTGTGCGG CGCTTTTTTCTGCGTGAGGCCCTTCCTTCGGACTCATATGTTTTTGAGCT TCGTTAATGTGCCTGGCACTGATATTGCTGTCTACGCTGTTCGACACTGA TATTGCTGTCTGACGCTGATGCTGCTATCTGATATTGCTTTCTTACACCG ATGCTGCTGTTTGAAATGTTTGGCACTGTTTTGACATTGAAACAGGACTG TCCCGAGGAATGGTTCTGCGTGGACTGTACGATTCTCCGACAGGTCTCCG CCCAGAAGCACGCCCACGCCAAGAGGTGTGTGTCGCTTGCGTTGACTTTG CCGACGTCGTGCTACGGCTACGGTAGTGGAGTCATCCTTATCGCCGCCGT GTTGTTGCTGTTGCCGTTGTCATGCTATTTTTGCGTCGTCGTCATTGTTG ACGGGGTTTGTTGCTGCTGGCGCTGCTTGTGTATTATATTTTTCTGCAAA ATAACTCCAACATAACAAGTCAAATCTATTTTATTTCAGTCTTTATCTGG TACATGTTTGGGGTTTGGGGTGCCAGCGCGTGAAGAACCCTCCTTGTGTA CGTGTAGTGTGATGACGACAAAGACGTTGTTGTTGTTGTTGTTGTTGGTG TCGTTGTTGTTGATGTCGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCC TGTGTATGTGGAAGAGGTGAGGTGCTGTTGTTGTTGTTGTTGTTGTTGTT GTTGTTGTTGTTGTTCTTTTACGTCGTTGGTGGTGTAATGTAAGCGGTAA GCGGTGAGGGCCTTCAGAGGGACACAGAGAATATAATAGAGGGGCGCTTC GACGACGCCACTTGTAGCCCAGACTCGAAACGACTATTGCATATTCGATC ATGCGCTCGCAGCATCAGCATCTCGGCACCAACCCCCCCCCACCCCCCAC CCCCACCCCCCCGGCCACCCTGCAACAGACAAAGCATGGATGCCGCTTCG CATGACCTGACGAGGGAGTTGGGTGATGAGGCCGGAAGCGACGATGAGGG CGGGGGGGGCGGCGGCAAAGTTGACACTTTTGAGGTGAGGCTGTTGGCTT CGTAGTGTGAGGCTGTTGACTTCGTAGTTGTCGGGGAGCAGAGATGAAGT GTACGAAATATTGCTCCTAGTACGAAGTACATTTTTGCAATCGTGGGAGT GATTGATCGCCCCCTAGGCCGACTCTCATAGCTGCGATTTTTCGAAGCCA GGAAATGTGCCGCTGGTGCAACCGTTGTGGTCTGGAGTTATCTCGTCCAG ACCCTTCCGTGGGGGTACATACCATTACCATTCGGTGTTCCCAGCCTCTA GGTGTTGGATCTAATCGATGATCTCGGAAAGTGGGTCTGGGGGATTGCTC GCACACACTTGTCCTTGCGTATTGGTGTTTGCGTTTTTTTTTGTTGGAGT AAAACGGCTTGTTTGTGCGGGTGCCCAGGGCTGTGTGTGGTGGTTCAGTG GCGGTGGCAAGACACAGCAGTAGCACAACAGCAGAAACACCAACATACAC CCAAAACAAAACGGCATCGACCGACCGCCAGACCTGTCGCCACAGCCACG CGAACGAGTGAATGACAGGAGCAACACCAGCGCCCCCCACATGAACATCA ACCAACCACCAGACCTGTTGCAATACTTGTTGTCACTCGAGTGAATCCCG GGCCGCAGAGAAAGTGCGGGCGTACGTGTAGATGAAGCGACTGCTTATAA CATGTTGAGAATGTACGCAACAAGCACTGAGGGAGCACCCGTTGGAGACA GTAGCCCAAAATCGAAGGGATGTGCCAAAGCCTTCACAGAGTGAATATAG AGGAAACTCGGCTGCATGCTGGACTTGATTCATATCGTTTGTATGCGTAT ACACTTGAGATAATCAGTGTTGCCAGGCGGCACACATCTCTGCTTCGATG AAGAATTTCCCTGGATTTCGTTTGATTCTGCTCCCGCCCCCCCCGGTCAA TGGCCTTCACAACTGAGGCATGGAAAACATTAATACGCCCCCCGCCCCAA ACCCTTGTCTGTGCCCCCAGGTCACCCACCTCTATGGTCTAACTGCTAAG GCATGCAAAAAATAACAGGACGTCCCCCCTCCCCCCTCCAACCCTTGTAC TGTGCCCCCAGGTGACCGACCTCGACGTGTTCAGACAGCTTGTGCTCAAC AGACTCACGGCAGATGACGGGACCAGCCGAAGCGCTCAGAGGTCGTCGTC ATTATCATCATCATTATCATCCAGACACGGCCGGAGTGTTGCCGTTAGGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13513:358..3507+

>mRNA_E-fasciculatus_F_contig13513.2618.1 ID=mRNA_E-fasciculatus_F_contig13513.2618.1|Name=mRNA_E-fasciculatus_F_contig13513.2618.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=978bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13513:358..3507+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTCGCGGGTCGGGGTGCTTGGCACAGGAGGAGAGCATCCGGTGCATCTG
CGGCGGTGCCGGTAGGGACACGGGGGACGGGGGCGAAGGGGGGGTGATGA
TGCTCGACTGCGACCGCTGTCACCGCTGGTTCCACGGCCACTGCGTGGGC
ATCACCTCGCAGGAGTCTCGCGGGTCGGGGTGCTTGGCACAGGAGGAGAG
CATCCGGTGCATCTGCGGCGGTGCCGGTAGGGACACGGGGGACGGGGGCG
AAGGGGGGGTGATGATGCTCGACTGCGACCGCTGTCACCGCTGGTTCCAC
GGCCACTGCGTGGGCATCACCTCGCAGGAGGACTGTCCCGAGGAATGGTT
CTGCGTGGACTGTACGATTCTCCGACAGGTCTCCGCCCAGAAGCACGCCC
ACGCCAAGAGGACTGTCCCGAGGAATGGTTCTGCGTGGACTGTACGATTC
TCCGACAGGTCTCCGCCCAGAAGCACGCCCACGCCAAGAGACAAAGCATG
GATGCCGCTTCGCATGACCTGACGAGGGAGTTGGGTGATGAGGCCGGAAG
CGACGATGAGGGCGGGGGGGGCGGCGGCAAAGTTGACACTTTTGAGACAA
AGCATGGATGCCGCTTCGCATGACCTGACGAGGGAGTTGGGTGATGAGGC
CGGAAGCGACGATGAGGGCGGGGGGGGCGGCGGCAAAGTTGACACTTTTG
AGGTGACCGACCTCGACGTGTTCAGACAGCTTGTGCTCAACAGACTCACG
GCAGATGACGGGACCAGCCGAAGCGCTCAGAGGTCGTCGTCATTATCATC
ATCATTATCATCCAGACACGGCCGGAGTGTTGCCGTTAGGGTGACCGACC
TCGACGTGTTCAGACAGCTTGTGCTCAACAGACTCACGGCAGATGACGGG
ACCAGCCGAAGCGCTCAGAGGTCGTCGTCATTATCATCATCATTATCATC
CAGACACGGCCGGAGTGTTGCCGTTAGG
back to top