mRNA_E-fasciculatus_F_contig1351.2615.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1351.2615.1
Unique NamemRNA_E-fasciculatus_F_contig1351.2615.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1351.2615.1 vs. uniprot
Match: A0A6H5K1P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P9_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 6.110e-65
Identity = 184/201 (91.54%), Postives = 185/201 (92.04%), Query Frame = 1 
Query:   34 PLAEVAFGSSWGSMGXXXXXXXXXXXXXXXXXXXXXXXXXSNLWGSLGIDVGGAGVPASGQAIWGSSSLLDSVGGDXXXXXXXX----AIAGDGLSLLLGPSNGSTVQAPVDATSLPPFSSSSPLDLASWGVGGRAGAGALAGDEFVGGLASSLSGLSMDDSASGVLGGKAGEQPQXXXXXXXXXXXX--FGSASSLSSWG 618
            PLA+VAFGSSWGSMGXXXXXXXXXXXXXXXXXXXXXXXX SNLWGSLGIDVGGAGVP SGQAIWGSSSLLDSVGGD  XXXXXX    AIAGDGLSLLLGPSN STVQAP DATSLPPFSSS PLDLASWGVG R GAGALAGDEFVGGLASSLSGLSMDDSASGVLGGKAGEQPQXXXXXXXXXXX   FGSASSLSSWG
Sbjct: 1436 PLADVAFGSSWGSMGXXXXXXXXXXXXXXXXXXXXXXXX-SNLWGSLGIDVGGAGVPPSGQAIWGSSSLLDSVGGDGGXXXXXXXXXXAIAGDGLSLLLGPSNVSTVQAPADATSLPPFSSSCPLDLASWGVGRRGGAGALAGDEFVGGLASSLSGLSMDDSASGVLGGKAGEQPQXXXXXXXXXXXGGVFGSASSLSSWG 1635
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1351.2615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1P9_9PHAE6.110e-6591.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1351contigE-fasciculatus_F_contig1351:2..1286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_003990.1
Exons2
Model size1212
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1351.2615.1prot_E-fasciculatus_F_contig1351.2615.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1351 74..622 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927849.048765-UTR-E-fasciculatus_F_contig1351:1..731622927849.048765-UTR-E-fasciculatus_F_contig1351:1..73Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1351 2..73 +
1695995721.8770032-UTR-E-fasciculatus_F_contig1351:1..731695995721.8770032-UTR-E-fasciculatus_F_contig1351:1..73Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1351 2..73 +
1622927849.0843377-UTR-E-fasciculatus_F_contig1351:622..9871622927849.0843377-UTR-E-fasciculatus_F_contig1351:622..987Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1351 623..987 +
1695995721.8973737-UTR-E-fasciculatus_F_contig1351:622..9871695995721.8973737-UTR-E-fasciculatus_F_contig1351:622..987Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1351 623..987 +
1622927849.0993931-UTR-E-fasciculatus_F_contig1351:1060..12861622927849.0993931-UTR-E-fasciculatus_F_contig1351:1060..1286Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1351 1061..1286 +
1695995721.9114633-UTR-E-fasciculatus_F_contig1351:1060..12861695995721.9114633-UTR-E-fasciculatus_F_contig1351:1060..1286Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1351 1061..1286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927849.0687299-CDS-E-fasciculatus_F_contig1351:73..6221622927849.0687299-CDS-E-fasciculatus_F_contig1351:73..622Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1351 74..622 +
1695995721.8862917-CDS-E-fasciculatus_F_contig1351:73..6221695995721.8862917-CDS-E-fasciculatus_F_contig1351:73..622Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1351 74..622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1351.2615.1

>prot_E-fasciculatus_F_contig1351.2615.1 ID=prot_E-fasciculatus_F_contig1351.2615.1|Name=mRNA_E-fasciculatus_F_contig1351.2615.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=183bp
MGGGGGGGVKNTSSDAADDGGGGGGGGSNLWGSLGIDVGGAGVPASGQAI
WGSSSLLDSVGGDGGGSGGGGAIAGDGLSLLLGPSNGSTVQAPVDATSLP
PFSSSSPLDLASWGVGGRAGAGALAGDEFVGGLASSLSGLSMDDSASGVL
GGKAGEQPQQQQQQQQQRGGGFGSASSLSSWG*
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mRNA from alignment at E-fasciculatus_F_contig1351:2..1286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1351.2615.1 ID=mRNA_E-fasciculatus_F_contig1351.2615.1|Name=mRNA_E-fasciculatus_F_contig1351.2615.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1285bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1351:2..1286+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGGCGGCGGGGGAGGAGCTGGTCTGGGTCTTCCGCTTGCCGAGGTTGC
GTTCGGGTCGTCATGGGGAAGCATGGGCGGCGGCGGGGGCGGGGGCGTAA
AGAACACATCCTCTGACGCAGCCGACGATGGCGGCGGAGGCGGCGGCGGC
GGTAGTAACCTGTGGGGGTCGCTCGGGATTGATGTGGGAGGGGCTGGTGT
ACCTGCTAGCGGGCAGGCTATCTGGGGAAGCAGCTCATTGTTGGACTCCG
TGGGCGGCGACGGCGGCGGCAGCGGCGGCGGTGGCGCCATCGCGGGGGAC
GGGTTGTCCCTTCTCTTGGGGCCGTCGAACGGGTCCACGGTGCAGGCACC
GGTCGATGCCACCTCGTTGCCGCCCTTCTCGTCTTCTTCTCCGTTGGATC
TGGCCTCGTGGGGTGTTGGCGGCCGGGCAGGTGCCGGAGCCTTGGCGGGT
GATGAGTTCGTGGGTGGGTTGGCTTCTTCGCTTTCTGGGTTGTCGATGGA
TGACTCTGCTAGCGGGGTGCTAGGAGGAAAGGCCGGGGAGCAACCGCAAC
AGCAGCAGCAGCAGCAGCAACAGCGAGGAGGAGGGTTTGGTTCCGCGAGC
AGTCTCAGCAGCTGGGGTTGAGACGTTCTTTCGATAATTTTTTTAAAAGA
GTGTTCTTGTGTCGATCGTCGGAGGGTGGAAGAAAAAGTTAACGCTGTTG
TAAACGCGGACGGGATGTTGCATGTATGAGTCGGTCGCCACACACCTCAG
TTGGCGACAATCGGGGTGAGTGGGTCGTCGATAGATCTGCTGACCTTCAC
TGCTCTGGCCTTTCACGTCAGATGCAGTGTGTCCGGCTGTTCGCCCTTGC
CTGAGTTTGACGTGAAGTTGTCTCACCGTGCGCTGCGCAAAGTAATTCAT
ACCGCGCACATGTACGTCGTTGTCGTTGTTTGGCCGTGAAAACAGTCGTG
GAGTTGACGGTTGATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCAC
ATAAAAAAACCGTTCCGGTCTCTGCTACGCAAGTACCTTTCTAACGTTCG
TTTCGGTAGCGCTTCGTTTTTTACGGGAGAAAACGCCAATTTCCGCTCTT
CTGGGTTATGCGTGTGTTGGCTGCTGGTGATTTGTGGTGATACCCCACAA
TTTGTGCGTGAACATGCCAAACTACGCTTTGGACTGGTGGGATTGGTTGA
CGCCGACACAACCGAAGTGTAGGACGAACCGATCCTTAGAAGCGACAACC
GTGGGAACTCGGGAGACCACTGATGGACAGGCGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1351:2..1286+

>mRNA_E-fasciculatus_F_contig1351.2615.1 ID=mRNA_E-fasciculatus_F_contig1351.2615.1|Name=mRNA_E-fasciculatus_F_contig1351.2615.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1098bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1351:2..1286+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGGCGGCGGGGGCGGGGGCGTAAAGAACACATCCTCTGACGCAGC
CGACGATGGCGGCGGAGGCGGCGGCGGCGGTAGTAACCTGTGGGGGTCGC
TCGGGATTGATGTGGGAGGGGCTGGTGTACCTGCTAGCGGGCAGGCTATC
TGGGGAAGCAGCTCATTGTTGGACTCCGTGGGCGGCGACGGCGGCGGCAG
CGGCGGCGGTGGCGCCATCGCGGGGGACGGGTTGTCCCTTCTCTTGGGGC
CGTCGAACGGGTCCACGGTGCAGGCACCGGTCGATGCCACCTCGTTGCCG
CCCTTCTCGTCTTCTTCTCCGTTGGATCTGGCCTCGTGGGGTGTTGGCGG
CCGGGCAGGTGCCGGAGCCTTGGCGGGTGATGAGTTCGTGGGTGGGTTGG
CTTCTTCGCTTTCTGGGTTGTCGATGGATGACTCTGCTAGCGGGGTGCTA
GGAGGAAAGGCCGGGGAGCAACCGCAACAGCAGCAGCAGCAGCAGCAACA
GCGAGGAGGAGGGTTTGGTTCCGCGAGCAGTCTCAGCAGCTGGGGTTGAA
TGGGCGGCGGCGGGGGCGGGGGCGTAAAGAACACATCCTCTGACGCAGCC
GACGATGGCGGCGGAGGCGGCGGCGGCGGTAGTAACCTGTGGGGGTCGCT
CGGGATTGATGTGGGAGGGGCTGGTGTACCTGCTAGCGGGCAGGCTATCT
GGGGAAGCAGCTCATTGTTGGACTCCGTGGGCGGCGACGGCGGCGGCAGC
GGCGGCGGTGGCGCCATCGCGGGGGACGGGTTGTCCCTTCTCTTGGGGCC
GTCGAACGGGTCCACGGTGCAGGCACCGGTCGATGCCACCTCGTTGCCGC
CCTTCTCGTCTTCTTCTCCGTTGGATCTGGCCTCGTGGGGTGTTGGCGGC
CGGGCAGGTGCCGGAGCCTTGGCGGGTGATGAGTTCGTGGGTGGGTTGGC
TTCTTCGCTTTCTGGGTTGTCGATGGATGACTCTGCTAGCGGGGTGCTAG
GAGGAAAGGCCGGGGAGCAACCGCAACAGCAGCAGCAGCAGCAGCAACAG
CGAGGAGGAGGGTTTGGTTCCGCGAGCAGTCTCAGCAGCTGGGGTTGA
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