mRNA_E-fasciculatus_F_contig13508.2614.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13508.2614.1
Unique NamemRNA_E-fasciculatus_F_contig13508.2614.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13508.2614.1 vs. uniprot
Match: A0A6H5KSG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG1_9PHAE)

HSP 1 Score: 336 bits (861), Expect = 2.000e-107
Identity = 238/313 (76.04%), Postives = 247/313 (78.91%), Query Frame = 1 
Query:    1 RLELATAYPAVGEA-GGXXXXXCSGSSGVPYPRPASGSLRPSSSSNNPYDARGHVGRSSAAAADXXXX-SRRWAAQGEYEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----SFGVEDLEEEGVAGDGGGGPAPVGAAAKGRNSYALLGGRQSDRPLSATAAA----------------DWLSAGEDDYRGGAG-WRDWTAAAAGVGASPEAAGAFSAPGSIRSGAAATKFSGGDMFGLGEAALGVPAHDRRAEAAAAAARGAPGRGLLEGGGVYGXXXXXXXAPRRSLGMDRGALPEALAGTLDHI 867
            RLE +TAYPAVGE+ GGXXXXXCSGSSGVPYPRPASGSLRP SSS NPYDAR H GRSSAAA +     SRRW A+GEYEG          XXXXXXXXXXXXXXXXXXXXXX     SFGVEDLEE+GV  DG  GPAPVGAA K R+SYALLGGRQS+RPLSATAAA                DWLSAGEDDYRGGA  WRDWTA A  VGA+PEAAGAFSAPGS RSGAAATKFSGGDMFGLGEAALG PAH RR EA AAA RGAPGRGLLEGGGVYG   XXX APRRSL +DRGALPEALAGTLDHI
Sbjct:  311 RLETSTAYPAVGESSGGXXXXXCSGSSGVPYPRPASGSLRPPSSSRNPYDARDHAGRSSAAAGEAAAAASRRWTARGEYEGWGKHQPPLPPXXXXXXXXXXXXXXXXXXXXXXXXXXHSFGVEDLEEDGVVDDGPEGPAPVGAAEKERDSYALLGGRQSERPLSATAAAATAALAAAPAIRTGAADWLSAGEDDYRGGAAVWRDWTAPAPAVGAAPEAAGAFSAPGSFRSGAAATKFSGGDMFGLGEAALGGPAHGRRGEAGAAA-RGAPGRGLLEGGGVYGTGGXXXGAPRRSLEVDRGALPEALAGTLDHI 622
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BLAST of mRNA_E-fasciculatus_F_contig13508.2614.1 vs. uniprot
Match: D8LSH2_ECTSI (Lissencephaly protein 1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH2_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 1.630e-70
Identity = 148/190 (77.89%), Postives = 153/190 (80.53%), Query Frame = 1 
Query:  349 DLEEEGVAGDGGGGPAPVGAAAKGRNSYALLGGRQSDRPLSATAAA----------------DWLSAGEDDYRGG-AGWRDWTAAAAGVGASPEAAGAFSAPGSIRSGAAATKFSGGDMFGLGEAALGVPAHDRRAEAAAAAARGAPGRGLLEGGGVYGXXXXXXXAPRRSLGMDRGALPEALAGTLDHI 867
            DLEE+GVA DG GGPAPVGAAAK R+SY LLGGRQS+RPLSATAAA                DWLSAGEDDYRGG A WRDWTA A  VGA+PEAAGA SAPGS RSGAAATKFSGGDMFGLGEAALG PAH RR   AAAA RGAPGRGLLEGGGV G  XXXXXAPRRSL +DRGALPEALAGTLDHI
Sbjct:  452 DLEEDGVADDGVGGPAPVGAAAKERDSYELLGGRQSERPLSATAAAGAAALAAAPAIRTAAADWLSAGEDDYRGGGAVWRDWTAPAPAVGAAPEAAGAISAPGSFRSGAAATKFSGGDMFGLGEAALGGPAHGRRG-GAAAAVRGAPGRGLLEGGGVCGTGXXXXXAPRRSLEVDRGALPEALAGTLDHI 640
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13508.2614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSG1_9PHAE2.000e-10776.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSH2_ECTSI1.630e-7077.89Lissencephaly protein 1-like n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13508contigE-fasciculatus_F_contig13508:2665..3625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.5
Seed ortholog evalue5.4e-61
Seed eggNOG ortholog2880.D8LSH2
Preferred namePOC1A
KEGG koko:K16482
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000922,GO:0001501,GO:0002062,GO:0002063,GO:0003413,GO:0003416,GO:0003417,GO:0003418,GO:0003431,GO:0003433,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005819,GO:0005856,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007275,GO:0007276,GO:0007283,GO:0008150,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010564,GO:0010638,GO:0010824,GO:0010825,GO:0015630,GO:0016043,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0031023,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0033043,GO:0035265,GO:0036064,GO:0040007,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045787,GO:0046605,GO:0046607,GO:0048232,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048589,GO:0048609,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051216,GO:0051493,GO:0051495,GO:0051704,GO:0051726,GO:0060271,GO:0060348,GO:0060349,GO:0060350,GO:0060351,GO:0061448,GO:0065007,GO:0070507,GO:0070925,GO:0071840,GO:0090068,GO:0098868,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902850,GO:1903047,GO:1905515
EggNOG free text desc.growth plate cartilage chondrocyte development
EggNOG OGs2CMZ3@1,2QSVJ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Ec32 ortholog descriptionPOC1 centriolar protein homolog A
Ec32 orthologEc-21_003690.1
Exons1
Model size961
Cds size960
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927848.9969769-CDS-E-fasciculatus_F_contig13508:2665..36251622927848.9969769-CDS-E-fasciculatus_F_contig13508:2665..3625Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13508 2666..3625 -
1695995721.8640177-CDS-E-fasciculatus_F_contig13508:2665..36251695995721.8640177-CDS-E-fasciculatus_F_contig13508:2665..3625Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13508 2666..3625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13508.2614.1prot_E-fasciculatus_F_contig13508.2614.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13508 2666..3625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13508.2614.1

>prot_E-fasciculatus_F_contig13508.2614.1 ID=prot_E-fasciculatus_F_contig13508.2614.1|Name=mRNA_E-fasciculatus_F_contig13508.2614.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=320bp
RLELATAYPAVGEAGGGGGGSCSGSSGVPYPRPASGSLRPSSSSNNPYDA
RGHVGRSSAAAADAAAASRRWAAQGEYEGEEKQRPPPPPLPSSPQQRQRQ
RQQLQQQQQQRSFGVEDLEEEGVAGDGGGGPAPVGAAAKGRNSYALLGGR
QSDRPLSATAAADWLSAGEDDYRGGAGWRDWTAAAAGVGASPEAAGAFSA
PGSIRSGAAATKFSGGDMFGLGEAALGVPAHDRRAEAAAAAARGAPGRGL
LEGGGVYGAGGGGGGAPRRSLGMDRGALPEALAGTLDHIXXXXVDEDRRG
SRAAPYPDRGQASAGGEGWG
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mRNA from alignment at E-fasciculatus_F_contig13508:2665..3625-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13508.2614.1 ID=mRNA_E-fasciculatus_F_contig13508.2614.1|Name=mRNA_E-fasciculatus_F_contig13508.2614.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=961bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13508:2665..3625- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCCTGGAATTGGCGACGGCATACCCCGCGGTAGGAGAAGCGGGTGGCGG
TGGCGGCGGTAGCTGTAGCGGTAGCAGCGGCGTCCCGTACCCTCGTCCAG
CGAGTGGGTCCCTCCGGCCGTCGTCGTCGTCGAATAATCCCTACGACGCC
CGCGGTCATGTTGGACGCTCTTCCGCCGCAGCTGCCGATGCAGCAGCCGC
GAGCCGGCGGTGGGCTGCCCAGGGAGAGTACGAAGGGGAGGAGAAGCAAC
GGCCGCCGCCGCCGCCGCTGCCGTCGTCTCCTCAGCAACGGCAGAGGCAG
CGACAGCAGCTTCAGCAGCAGCAGCAGCAGCGCTCCTTCGGCGTGGAGGA
CCTCGAGGAGGAGGGGGTAGCCGGGGACGGCGGTGGGGGCCCGGCCCCGG
TTGGCGCTGCTGCGAAAGGACGGAACTCGTATGCGCTGCTGGGCGGGCGC
CAGAGCGACCGTCCTTTGTCGGCAACGGCGGCGGCTGATTGGCTTAGCGC
TGGCGAGGACGACTATCGCGGCGGCGCCGGCTGGAGGGATTGGACGGCGG
CGGCGGCGGGGGTGGGGGCGTCGCCCGAAGCGGCCGGCGCTTTCTCGGCC
CCTGGCTCCATCAGAAGCGGAGCAGCAGCAACGAAGTTCAGCGGAGGGGA
TATGTTTGGCTTGGGCGAGGCAGCGCTGGGAGTCCCCGCGCATGACCGAA
GGGCAGAGGCAGCAGCAGCGGCGGCGAGAGGTGCGCCCGGGAGAGGTCTG
CTGGAGGGAGGCGGGGTATACGGCGCTGGTGGTGGCGGTGGGGGGGCTCC
ACGGAGGAGCTTGGGCATGGACCGGGGGGCCCTGCCTGAAGCGCTAGCGG
GAACCCTGGACCACATCNNNNNNNNNNATGTTGACGAGGACCGTCGGGGT
TCTCGAGCAGCGCCTTACCCTGACAGAGGACAGGCTTCAGCAGGGGGAGA
GGGCTGGGGAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13508:2665..3625-

>mRNA_E-fasciculatus_F_contig13508.2614.1 ID=mRNA_E-fasciculatus_F_contig13508.2614.1|Name=mRNA_E-fasciculatus_F_contig13508.2614.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1920bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13508:2665..3625- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCCTGGAATTGGCGACGGCATACCCCGCGGTAGGAGAAGCGGGTGGCGG
TGGCGGCGGTAGCTGTAGCGGTAGCAGCGGCGTCCCGTACCCTCGTCCAG
CGAGTGGGTCCCTCCGGCCGTCGTCGTCGTCGAATAATCCCTACGACGCC
CGCGGTCATGTTGGACGCTCTTCCGCCGCAGCTGCCGATGCAGCAGCCGC
GAGCCGGCGGTGGGCTGCCCAGGGAGAGTACGAAGGGGAGGAGAAGCAAC
GGCCGCCGCCGCCGCCGCTGCCGTCGTCTCCTCAGCAACGGCAGAGGCAG
CGACAGCAGCTTCAGCAGCAGCAGCAGCAGCGCTCCTTCGGCGTGGAGGA
CCTCGAGGAGGAGGGGGTAGCCGGGGACGGCGGTGGGGGCCCGGCCCCGG
TTGGCGCTGCTGCGAAAGGACGGAACTCGTATGCGCTGCTGGGCGGGCGC
CAGAGCGACCGTCCTTTGTCGGCAACGGCGGCGGCTGATTGGCTTAGCGC
TGGCGAGGACGACTATCGCGGCGGCGCCGGCTGGAGGGATTGGACGGCGG
CGGCGGCGGGGGTGGGGGCGTCGCCCGAAGCGGCCGGCGCTTTCTCGGCC
CCTGGCTCCATCAGAAGCGGAGCAGCAGCAACGAAGTTCAGCGGAGGGGA
TATGTTTGGCTTGGGCGAGGCAGCGCTGGGAGTCCCCGCGCATGACCGAA
GGGCAGAGGCAGCAGCAGCGGCGGCGAGAGGTGCGCCCGGGAGAGGTCTG
CTGGAGGGAGGCGGGGTATACGGCGCTGGTGGTGGCGGTGGGGGGGCTCC
ACGGAGGAGCTTGGGCATGGACCGGGGGGCCCTGCCTGAAGCGCTAGCGG
GAACCCTGGACCACATCNNNNNNNNNNATGTTGACGAGGACCGTCGGGGT
TCTCGAGCAGCGCCTTACCCTGACAGAGGACAGGCTTCAGCAGGGGGAGA
GGGCTGGGGACGCCTGGAATTGGCGACGGCATACCCCGCGGTAGGAGAAG
CGGGTGGCGGTGGCGGCGGTAGCTGTAGCGGTAGCAGCGGCGTCCCGTAC
CCTCGTCCAGCGAGTGGGTCCCTCCGGCCGTCGTCGTCGTCGAATAATCC
CTACGACGCCCGCGGTCATGTTGGACGCTCTTCCGCCGCAGCTGCCGATG
CAGCAGCCGCGAGCCGGCGGTGGGCTGCCCAGGGAGAGTACGAAGGGGAG
GAGAAGCAACGGCCGCCGCCGCCGCCGCTGCCGTCGTCTCCTCAGCAACG
GCAGAGGCAGCGACAGCAGCTTCAGCAGCAGCAGCAGCAGCGCTCCTTCG
GCGTGGAGGACCTCGAGGAGGAGGGGGTAGCCGGGGACGGCGGTGGGGGC
CCGGCCCCGGTTGGCGCTGCTGCGAAAGGACGGAACTCGTATGCGCTGCT
GGGCGGGCGCCAGAGCGACCGTCCTTTGTCGGCAACGGCGGCGGCTGATT
GGCTTAGCGCTGGCGAGGACGACTATCGCGGCGGCGCCGGCTGGAGGGAT
TGGACGGCGGCGGCGGCGGGGGTGGGGGCGTCGCCCGAAGCGGCCGGCGC
TTTCTCGGCCCCTGGCTCCATCAGAAGCGGAGCAGCAGCAACGAAGTTCA
GCGGAGGGGATATGTTTGGCTTGGGCGAGGCAGCGCTGGGAGTCCCCGCG
CATGACCGAAGGGCAGAGGCAGCAGCAGCGGCGGCGAGAGGTGCGCCCGG
GAGAGGTCTGCTGGAGGGAGGCGGGGTATACGGCGCTGGTGGTGGCGGTG
GGGGGGCTCCACGGAGGAGCTTGGGCATGGACCGGGGGGCCCTGCCTGAA
GCGCTAGCGGGAACCCTGGACCACATCNNNNNNNNNNATGTTGACGAGGA
CCGTCGGGGTTCTCGAGCAGCGCCTTACCCTGACAGAGGACAGGCTTCAG
CAGGGGGAGAGGGCTGGGGA
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