mRNA_E-fasciculatus_F_contig13501.2611.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13501.2611.1
Unique NamemRNA_E-fasciculatus_F_contig13501.2611.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13501.2611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13501contigE-fasciculatus_F_contig13501:969..2445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size511
Cds size510
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927848.7552373-CDS-E-fasciculatus_F_contig13501:968..13761622927848.7552373-CDS-E-fasciculatus_F_contig13501:968..1376Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13501 969..1376 +
1695995721.7363505-CDS-E-fasciculatus_F_contig13501:968..13761695995721.7363505-CDS-E-fasciculatus_F_contig13501:968..1376Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13501 969..1376 +
1622927848.7689233-CDS-E-fasciculatus_F_contig13501:2343..24451622927848.7689233-CDS-E-fasciculatus_F_contig13501:2343..2445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13501 2344..2445 +
1695995721.7458258-CDS-E-fasciculatus_F_contig13501:2343..24451695995721.7458258-CDS-E-fasciculatus_F_contig13501:2343..2445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13501 2344..2445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13501.2611.1prot_E-fasciculatus_F_contig13501.2611.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13501 969..2445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13501.2611.1

>prot_E-fasciculatus_F_contig13501.2611.1 ID=prot_E-fasciculatus_F_contig13501.2611.1|Name=mRNA_E-fasciculatus_F_contig13501.2611.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=170bp
AGGGGSSNNGGGGNGSLLSSSLRSPTGSDQLSSSSHHRGAGLVHGNSSPD
LMGVGGGGGGGGGLGRPLSAPHHHHHHMLRAAREQQQQHDLPPSQQQQQL
VLGRHSSAGSPSLYSRQHQQQRSSAAGGGRGQQQHTQHHHHQTHQQQPER
GIRRGISAPRMYAASPEDP*
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mRNA from alignment at E-fasciculatus_F_contig13501:969..2445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13501.2611.1 ID=mRNA_E-fasciculatus_F_contig13501.2611.1|Name=mRNA_E-fasciculatus_F_contig13501.2611.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1477bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13501:969..2445+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGGTGGTGGCGGAAGCAGCAACAATGGAGGGGGTGGCAACGGCTCGTT
GCTGTCTTCCTCCCTGAGATCGCCAACGGGGTCGGACCAGCTGTCCAGCA
GCTCTCACCACCGGGGAGCAGGGCTGGTTCATGGCAACAGCAGTCCGGAC
CTGATGGGGGTCGGCGGCGGCGGCGGCGGCGGGGGAGGGCTAGGGCGGCC
GCTGTCTGCTCCCCACCACCACCACCACCACATGCTGCGGGCCGCTCGAG
AGCAACAGCAGCAGCATGACCTGCCCCCCAGCCAGCAACAGCAGCAGTTG
GTGCTCGGGAGGCACTCGTCAGCCGGAAGCCCGTCTTTGTACTCTCGCCA
GCATCAACAGCAGCGATCATCTGCTGCTGGGGGGGGACGTGGCCAACAGC
AACACACGGTAAGACTCAAGGAAATCGGGGGGGACAAGAAGGGGGGTGGG
GGTCGCTAGCCCTTTGCTCTACGCAAGCGCGGCTTGGGCACGTCTCTGGA
GCATCATGGTTTATTGTTGTGCATGCAAAACTTTGCTCTCTACTCTCTGT
CTCTCTCTCTCTCGGGGAAGCCTTACTTGAAGTACCCTCCTTACGGGGTA
AGTGGCTGCTGCTGAAAAAATATCCCCGAACACGCACCCAAAGATGTAAA
TAACGCAATACACTGAAAAGAGAGAGCGAGCGTACGTGGTGTTTTGGCAG
AAGTTAAAAGTGTGTGCGCCGGTGTGTGTGTGCGTCCCATTTTTTGTCCT
GCTGTGCTGCTGCTGCTGGTTGTCGCAACACACGAAAGTTTTTTCGAACA
TGACTTTTGATGATCGTCGCATCATCATCCACGCCTGTCTGTCTGTCTTT
CTGTCTGTCTGTCGGAATGATGGATGGTTTATATTTGTTGCAGGTCTCGA
CAGCAACAACAGCCACCACCCCGCCTTCCCCCAGCCCAATCCATTTTGAA
CCGCTGCTTCTTTCTGTTTTTGCACCTACACAAAACGGCGGTGTGTGTGC
CCGTCAACAGCATCGAGTAGACAGAATGCGCAGGAGGTAAACTACCCCTC
GCGTCTACACGGCAGTAGCATCATCAAGTGCCGTTTAATACGCTGCTGCG
TGCGTTGTGTGTGCCCTCCTGCACCGCCGCGTTGGTTCGTGACTACTGCT
GCTGTGGTGCGTCTGCTGCGGCGCGCGCCAGCTCTTGCTGTCTCTCTTTT
CGCCCCATTCCCGTTGCCCACGCAATTATTTTTTTCACGCGATCAAGTCC
GTTTGTTGACTTCCTCTTGTCGTAACGATGTAGTGGAGAGTTTCATCTCC
CACTCAGAGTATTTGTACTGCGCACCACCATTTAACACCATCAGCTCCCG
ACCCCTTCCGTCTGCCAACGTGCAGCAGCACCACCACCACCAAACACACC
AGCAGCAGCCGGAACGCGGCATTCGCAGGGGCATCTCGGCACCCCGAATG
TACGCGGCATCCCCTGAAGACCCGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13501:969..2445+

>mRNA_E-fasciculatus_F_contig13501.2611.1 ID=mRNA_E-fasciculatus_F_contig13501.2611.1|Name=mRNA_E-fasciculatus_F_contig13501.2611.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1020bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13501:969..2445+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGGTGGTGGCGGAAGCAGCAACAATGGAGGGGGTGGCAACGGCTCGTT
GCTGTCTTCCTCCCTGAGATCGCCAACGGGGTCGGACCAGCTGTCCAGCA
GCTCTCACCACCGGGGAGCAGGGCTGGTTCATGGCAACAGCAGTCCGGAC
CTGATGGGGGTCGGCGGCGGCGGCGGCGGCGGGGGAGGGCTAGGGCGGCC
GCTGTCTGCTCCCCACCACCACCACCACCACATGCTGCGGGCCGCTCGAG
AGCAACAGCAGCAGCATGACCTGCCCCCCAGCCAGCAACAGCAGCAGTTG
GTGCTCGGGAGGCACTCGTCAGCCGGAAGCCCGTCTTTGTACTCTCGCCA
GCATCAACAGCAGCGATCATCTGCTGCTGGGGGGGGACGTGGCCAACAGC
AACACACGGCTGGTGGTGGCGGAAGCAGCAACAATGGAGGGGGTGGCAAC
GGCTCGTTGCTGTCTTCCTCCCTGAGATCGCCAACGGGGTCGGACCAGCT
GTCCAGCAGCTCTCACCACCGGGGAGCAGGGCTGGTTCATGGCAACAGCA
GTCCGGACCTGATGGGGGTCGGCGGCGGCGGCGGCGGCGGGGGAGGGCTA
GGGCGGCCGCTGTCTGCTCCCCACCACCACCACCACCACATGCTGCGGGC
CGCTCGAGAGCAACAGCAGCAGCATGACCTGCCCCCCAGCCAGCAACAGC
AGCAGTTGGTGCTCGGGAGGCACTCGTCAGCCGGAAGCCCGTCTTTGTAC
TCTCGCCAGCATCAACAGCAGCGATCATCTGCTGCTGGGGGGGGACGTGG
CCAACAGCAACACACGCAGCACCACCACCACCAAACACACCAGCAGCAGC
CGGAACGCGGCATTCGCAGGGGCATCTCGGCACCCCGAATGTACGCGGCA
TCCCCTGAAGACCCGTGACAGCACCACCACCACCAAACACACCAGCAGCA
GCCGGAACGCGGCATTCGCAGGGGCATCTCGGCACCCCGAATGTACGCGG
CATCCCCTGAAGACCCGTGA
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