mRNA_E-fasciculatus_F_contig1349.2607.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1349.2607.1
Unique NamemRNA_E-fasciculatus_F_contig1349.2607.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1349.2607.1 vs. uniprot
Match: D7FTI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI0_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 9.040e-69
Identity = 140/158 (88.61%), Postives = 144/158 (91.14%), Query Frame = 3 
Query:  120 MDVVDENQGSHGIIGSPVRRKVSAASRAASSASPLAERARDSQGVVIVMESQRQAAGGGEAVSGRSSTGSNGASKRARLTGKEAHGSRRETASNLELAGVLEALGSPSTGEVAMGEAAAGGETVAASAKNAKRRHKRRMTADILDINNIFDDSMSSDG 593
            MDVVDENQGSHGIIGSPVRRKVSAAS AASSASPLAERARD+QGVV  MESQRQAAGG +AVSGRSSTGSN ASKRAR TGKE HGSRRETASNLELAGVLEALGSPSTGEV M EAA GGE VAA AK ++ RHKRRMTADILDINNIFDDSMSSDG
Sbjct:    1 MDVVDENQGSHGIIGSPVRRKVSAASHAASSASPLAERARDAQGVV--MESQRQAAGGKKAVSGRSSTGSNSASKRARRTGKEPHGSRRETASNLELAGVLEALGSPSTGEVVMEEAAVGGEAVAACAKKSRMRHKRRMTADILDINNIFDDSMSSDG 156
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BLAST of mRNA_E-fasciculatus_F_contig1349.2607.1 vs. uniprot
Match: A0A6H5KYX0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX0_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 5.350e-37
Identity = 92/113 (81.42%), Postives = 95/113 (84.07%), Query Frame = 3 
Query:  255 VIVMESQRQAAGGGEAVSGRSSTGSNGASKRARLTGKEAHGSRRETASNLELAGVLEALGSPSTGEVAMGEAAAGGETVAASAKNAKRRHKRRMTADILDINNIFDDSMSSDG 593
            V   ES R AAGG +AVS RSSTGSN ASKRAR TGKE +GSRRETASNLELAGVLEALGSPSTGEV M EAA G E VA SAK +K RHKRRMTADILDINNIFDDSMSSDG
Sbjct:   35 VYSCESAR-AAGGIKAVSCRSSTGSNSASKRARRTGKEPNGSRRETASNLELAGVLEALGSPSTGEVVMEEAAVGREAVADSAKKSKMRHKRRMTADILDINNIFDDSMSSDG 146
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1349.2607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTI0_ECTSI9.040e-6988.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYX0_9PHAE5.350e-3781.42Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1349contigE-fasciculatus_F_contig1349:704..3189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size595
Cds size474
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1349.2607.1prot_E-fasciculatus_F_contig1349.2607.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1349 704..3070 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927847.7364113-CDS-E-fasciculatus_F_contig1349:703..9111622927847.7364113-CDS-E-fasciculatus_F_contig1349:703..911Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1349 704..911 -
1695995721.1904054-CDS-E-fasciculatus_F_contig1349:703..9111695995721.1904054-CDS-E-fasciculatus_F_contig1349:703..911Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1349 704..911 -
1622927847.7515767-CDS-E-fasciculatus_F_contig1349:1538..16421622927847.7515767-CDS-E-fasciculatus_F_contig1349:1538..1642Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1349 1539..1642 -
1695995721.2012596-CDS-E-fasciculatus_F_contig1349:1538..16421695995721.2012596-CDS-E-fasciculatus_F_contig1349:1538..1642Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1349 1539..1642 -
1622927847.7680628-CDS-E-fasciculatus_F_contig1349:2445..25561622927847.7680628-CDS-E-fasciculatus_F_contig1349:2445..2556Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1349 2446..2556 -
1695995721.211364-CDS-E-fasciculatus_F_contig1349:2445..25561695995721.211364-CDS-E-fasciculatus_F_contig1349:2445..2556Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1349 2446..2556 -
1622927847.7789261-CDS-E-fasciculatus_F_contig1349:3019..30701622927847.7789261-CDS-E-fasciculatus_F_contig1349:3019..3070Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1349 3020..3070 -
1695995721.223945-CDS-E-fasciculatus_F_contig1349:3019..30701695995721.223945-CDS-E-fasciculatus_F_contig1349:3019..3070Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1349 3020..3070 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927847.79208-UTR-E-fasciculatus_F_contig1349:3070..31891622927847.79208-UTR-E-fasciculatus_F_contig1349:3070..3189Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1349 3071..3189 -
1695995721.232818-UTR-E-fasciculatus_F_contig1349:3070..31891695995721.232818-UTR-E-fasciculatus_F_contig1349:3070..3189Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1349 3071..3189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1349.2607.1

>prot_E-fasciculatus_F_contig1349.2607.1 ID=prot_E-fasciculatus_F_contig1349.2607.1|Name=mRNA_E-fasciculatus_F_contig1349.2607.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=158bp
MDVVDENQGSHGIIGSPVRRKVSAASRAASSASPLAERARDSQGVVIVME
SQRQAAGGGEAVSGRSSTGSNGASKRARLTGKEAHGSRRETASNLELAGV
LEALGSPSTGEVAMGEAAAGGETVAASAKNAKRRHKRRMTADILDINNIF
DDSMSSDG
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mRNA from alignment at E-fasciculatus_F_contig1349:704..3189-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1349.2607.1 ID=mRNA_E-fasciculatus_F_contig1349.2607.1|Name=mRNA_E-fasciculatus_F_contig1349.2607.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2486bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1349:704..3189- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGACAGACAAAACGCAAGGGAACAGAAGTAGTTTTGTAGAGAGAGGACG
CCACTTGTGCCATCACCGACACATCGGGTACCGAGGATACGGCACCGCGC
TTGCCTTGGAAGGAGAGGAATGGATGTCGTGGACGAGAACCAGGGCTCAC
ATGGAATAATTGGGTCGCCGGTGAGTGTGGCCTCTCTACTGCTGCTGTGT
TGCACGCGTAGAAATAGCATACCGCCGCAGAGCAAGTCGTCTGCCGTTGC
CGCGAATGCTCTTTCGCCGAACAAGCAGCAGTGTACCGGTGTACCATCTT
GTAGCAGAGGCCTCGGAGCTTGCTGGCCCCGGTAGGCCGCTGCTTGTCCT
GCAAACCTGATTAGCGTCGCTTGCTCGAGCGTTTCTTGCTCTGTTTGTCA
TTTTACCTCTAACACGGTTTGTCGGTGTGTTGTAGTGCAAGACTTTGGGG
AACGGCGATCCGTACTTGGCCTACTGCTGCTGTATTGGTTGGTACATCGG
TCCACGCCGTTGCATCATTTTAGCCGGCTCTTTGTGTACACTCTCTCGGG
CGCCCAACCAAAACACTGCTGTTGTATTGTACAAAGAGCATGGGACTGAT
GCGGTGCTCACTGCCTTGCCGACCCTGCCACAGGTGAGACGAAAGGTATC
GGCTGCCTCCCGCGCTGCTTCTTCGGCCTCTCCCCTGGCGGAGCGAGCGC
GAGACTCTCAGGGGGTAGTGATCGTGATGGAATCGCAGCGGCAGGTAAGA
CCTGCCGTATTTTACTGCTCGGCCGTTGCTGCATGCATATGTACAGCAGT
AGGAGATTACCGACCAAAAAGGGTTATAAATCCGACGCCGCTCCCACCTG
CAACAACGCGATGTCTGCCACGTTAACGTTAACGTGGACGAGAGATGAGA
GCTGCCCCATGATGCGCATGAAGGCAACACACATAACCGCGTGTGCAGAG
ACGCAAGTCCAGAGCGCAGAACGACTGCACGTGCGGTGCAAGCTTAAGGT
TCTTGCCAGGTCCACATCATCACATCATTTCATTGCTACAACACAGTTGT
ATCGCTTGTAGGTTTGAGTACATCAGTGCAGCGCCGTCATTGTGTATGGG
AGCGCAAGTCTAGCGTTCGCGAAGATCGTATGCGGTCAGCGTACAGCACA
CAGCAGTAGTACACATGTGTAGTTCGCCTTTGTGTTCCGAACCGGCCACA
CCTGCCCACTGCCCCCGCACGGCAAGCGCTGTTGGACTGCTGTCATGGTG
TTGGGGTTACAACAGCACAGTACACGCTCGGCATCATGAGAATGAGGAGC
ACGACAGGAGCGGGGGCCTCCACCACGTGGGAAGCTCTTGCTAAGTTATT
GCCCCCACAACATGCTACCCACGGTTGCTGTGTGTTTGCTGTGCTTTCTG
CACCCCTGCGGAAGCTCGTGTAGGCCATGTTTTTGGTGGGAGGAAGACCG
GGGGTTGTAGCGGTCGTGATGTTATTCCCCCACCACCTGTTCACGGTGGA
TGCTGTTTGCCGTGCTCTCTGCACCCCTGCGACAAACTCACGCACAGGCT
GCTGGGGGGGGGGAGGCCGTTAGCGGTCGCTCGTCGACGGGAAGCAACGG
CGCGTCGAAGCGCGCTAGGCTCACGGGGAAAGAGGCCCACGGCTCGCGCA
GGTGCGTTCCATGCACTTTGGCGAGTGAGAGAAAGCGTCGTGGTTACTAC
GAGGGACATGTTTTCGGGAATTTGTCTGATCCGCCTTAACCTATCTGGTT
GGTTTCCGGTCTGGCGCCAGACACCACCTTTGTTTCTTGTCACCGTTTCG
ACAAACAAACATGGGCTTTGAAGGACGCGTCCGGCGGTTGTTCCCCCGAG
TCGGACGCACGGCCGAGAGGTGTCTCGACCTCTTCCGTCTTGAGGTCGCG
AGCCTCAGTTTCTGGCGGGGAGTGTTTGCGCCGTAACTAACGCCTCTCGT
AGAGTGCCGAAGTTGGCAAAACGTTCATCTCGCTGCCGTGGCGGGGCCGC
GCTTGTTTCCGACATCCCACCCCTTTCCTTTTGGCGCATAATAATCGCAC
ACCGTCGCTACAAACGCTGCGCGAGGGGAAACGAATTCTGGAGGGTATTT
CGAAAGGGCACCGTTGGTGCAGTTTCTTGCCGCAGTTTCCAAACGCTGCC
GGGTGGACGGAGTTCCGAGGAGGCGTTTCGAACGATTGTGCCCTCTACGC
ACACAGCAGGTTTTCTACACCACACCTTTTCACTCTTTGCCCTTTTTTAC
GACACGCTTGTTCCCTTCTCGTCGACAGGGAGACGGCGAGCAACTTGGAG
CTGGCGGGAGTTTTGGAAGCCCTCGGTTCGCCGTCGACCGGGGAGGTGGC
GATGGGGGAGGCGGCGGCAGGGGGTGAAACCGTCGCGGCCTCCGCCAAGA
ACGCGAAGAGGCGGCACAAACGCCGGATGACCGCCGACATCTTGGACATC
AACAACATCTTTGACGACAGCATGTCCAGTGATGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1349:704..3189-

>mRNA_E-fasciculatus_F_contig1349.2607.1 ID=mRNA_E-fasciculatus_F_contig1349.2607.1|Name=mRNA_E-fasciculatus_F_contig1349.2607.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=948bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1349:704..3189- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATGTCGTGGACGAGAACCAGGGCTCACATGGAATAATTGGGTCGCC
GATGGATGTCGTGGACGAGAACCAGGGCTCACATGGAATAATTGGGTCGC
CGGTGAGACGAAAGGTATCGGCTGCCTCCCGCGCTGCTTCTTCGGCCTCT
CCCCTGGCGGAGCGAGCGCGAGACTCTCAGGGGGTAGTGATCGTGATGGA
ATCGCAGCGGCAGGTGAGACGAAAGGTATCGGCTGCCTCCCGCGCTGCTT
CTTCGGCCTCTCCCCTGGCGGAGCGAGCGCGAGACTCTCAGGGGGTAGTG
ATCGTGATGGAATCGCAGCGGCAGGCTGCTGGGGGGGGGGAGGCCGTTAG
CGGTCGCTCGTCGACGGGAAGCAACGGCGCGTCGAAGCGCGCTAGGCTCA
CGGGGAAAGAGGCCCACGGCTCGCGCAGGCTGCTGGGGGGGGGGAGGCCG
TTAGCGGTCGCTCGTCGACGGGAAGCAACGGCGCGTCGAAGCGCGCTAGG
CTCACGGGGAAAGAGGCCCACGGCTCGCGCAGGGAGACGGCGAGCAACTT
GGAGCTGGCGGGAGTTTTGGAAGCCCTCGGTTCGCCGTCGACCGGGGAGG
TGGCGATGGGGGAGGCGGCGGCAGGGGGTGAAACCGTCGCGGCCTCCGCC
AAGAACGCGAAGAGGCGGCACAAACGCCGGATGACCGCCGACATCTTGGA
CATCAACAACATCTTTGACGACAGCATGTCCAGTGATGGGGGAGACGGCG
AGCAACTTGGAGCTGGCGGGAGTTTTGGAAGCCCTCGGTTCGCCGTCGAC
CGGGGAGGTGGCGATGGGGGAGGCGGCGGCAGGGGGTGAAACCGTCGCGG
CCTCCGCCAAGAACGCGAAGAGGCGGCACAAACGCCGGATGACCGCCGAC
ATCTTGGACATCAACAACATCTTTGACGACAGCATGTCCAGTGATGGG
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