mRNA_E-fasciculatus_F_contig13485.2605.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13485.2605.1
Unique NamemRNA_E-fasciculatus_F_contig13485.2605.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13485.2605.1 vs. uniprot
Match: A0A6H5L8Q2_9PHAE (Nop domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8Q2_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 8.750e-26
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 SSGQTNGLNSSLVFTPIQGLELVNPNADKEKKVMAANKKWFDSSSGFMSAKPK 159
            SSGQTNGLNSSLVFTPIQGLELVNPNADKEKKVMAANKKWFDSSSGFMSAKPK
Sbjct:  499 SSGQTNGLNSSLVFTPIQGLELVNPNADKEKKVMAANKKWFDSSSGFMSAKPK 551
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BLAST of mRNA_E-fasciculatus_F_contig13485.2605.1 vs. uniprot
Match: A0A836CKH5_9STRA (Nop domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKH5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.460e-20
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 SSGQTNGLNSSLVFTPIQGLELVNPNADKEKKVMAANKKWFDSSSGFMSAKPK 159
            SSG TNGL+SS++FTP+QG+ELVNPNADKE KV AAN KWFD++SGFMSAKPK
Sbjct:  451 SSGNTNGLSSSIIFTPVQGIELVNPNADKEAKVKAANAKWFDTTSGFMSAKPK 503
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BLAST of mRNA_E-fasciculatus_F_contig13485.2605.1 vs. uniprot
Match: A0A7S2XZL3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.130e-16
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 SSGQTNGLNSSLVFTPIQGLELVNPNADKEKKVMAANKKWFDSSSGFMSAKP 156
            SSG TNGL SSLVFTPIQG+ELVNPNA  EK V AANKKWF+++SGFMSAKP
Sbjct:  402 SSGATNGLASSLVFTPIQGIELVNPNAQAEK-VAAANKKWFNANSGFMSAKP 452
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BLAST of mRNA_E-fasciculatus_F_contig13485.2605.1 vs. uniprot
Match: W7U652_9STRA (U4 u6 small nuclear ribonucleoprotein prp31 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U652_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.210e-16
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 SSGQTNGLNSSLVFTPIQGLELVNPNADKEKK--VMAANKKWFDSSSGFMSAKPK 159
            SSG TNG+ SSLVFTP QGLEL+NP A +EK+  V  ANK WFDSSSGFMSAKP+
Sbjct:   56 SSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110
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BLAST of mRNA_E-fasciculatus_F_contig13485.2605.1 vs. uniprot
Match: A0A4D9DF62_9STRA (Nop domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DF62_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 9.720e-15
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 SSGQTNGLNSSLVFTPIQGLELVNPNADKEKK--VMAANKKWFDSSSGFMSAKPK 159
            SSG TNG+ SSLVFTP QGLEL+NP A +EK+  V  ANK WFDSSSGFMSAKP+
Sbjct:  529 SSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVEEANKSWFDSSSGFMSAKPR 583
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BLAST of mRNA_E-fasciculatus_F_contig13485.2605.1 vs. uniprot
Match: A0A7S4DKU2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKU2_HETAK)

HSP 1 Score: 75.5 bits (184), Expect = 1.250e-14
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 SSGQTNGLNSSLVFTPIQGLELVNPNADKEKKVMAANKKWFDSSSGFMSAKPK 159
            SSG TNGL SSLVFTP+QG+ELV+P+    KKV  ANKKWFD SSGF+SAKPK
Sbjct:  390 SSGATNGLASSLVFTPVQGIELVDPS----KKVEEANKKWFDPSSGFLSAKPK 438
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BLAST of mRNA_E-fasciculatus_F_contig13485.2605.1 vs. uniprot
Match: A0A7S2C7I0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C7I0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.790e-14
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 SSGQTNGLNSSLVFTPIQGLELVNPNADKEKKVMAANKKWFDSSSGFMSAKP 156
            SSG TNGL+SSLVFTP+QGLEL NP A+ E KV  ANKKWF  S+GF+SAKP
Sbjct:  443 SSGATNGLSSSLVFTPVQGLELANPTAN-EAKVSDANKKWFSQSNGFLSAKP 493
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BLAST of mRNA_E-fasciculatus_F_contig13485.2605.1 vs. uniprot
Match: B8C5F2_THAPS (Nop domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5F2_THAPS)

HSP 1 Score: 75.1 bits (183), Expect = 1.800e-14
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 SSGQTNGLNSSLVFTPIQGLELVNPNADKEKKVMAANKKWFDSSSGFMSAKPK 159
            SSG TNGL SS+VFTP+QGLELVNP+A+KE+ V AAN KWF S++GF SA PK
Sbjct:  449 SSGATNGLASSMVFTPVQGLELVNPDANKER-VRAANAKWFQSNAGFQSALPK 500
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BLAST of mRNA_E-fasciculatus_F_contig13485.2605.1 vs. uniprot
Match: A0A7S1U3H0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3H0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.180e-13
Identity = 32/50 (64.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   10 QTNGLNSSLVFTPIQGLELVNPNADKEKKVMAANKKWFDSSSGFMSAKPK 159
            + +G++SSLVFTP+QGLELV+P A+ +++V  ANKKWF++SSGF+SAKPK
Sbjct:  473 RNSGISSSLVFTPVQGLELVDPTAEAKRRVEEANKKWFNASSGFLSAKPK 522
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BLAST of mRNA_E-fasciculatus_F_contig13485.2605.1 vs. uniprot
Match: A0A7S0BZY3_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BZY3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.340e-13
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 SSGQTNGLNSSLVFTPIQGLELVNPNADKEKKVMAANKKWFDSSSGFMSAKPK 159
            SSG TNGL SS+VFTP+QGLELVNPNA++++ V  AN KWF  ++GF SA PK
Sbjct:  222 SSGTTNGLASSMVFTPVQGLELVNPNANRDR-VNEANLKWFGENAGFRSALPK 273
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13485.2605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8Q2_9PHAE8.750e-26100.00Nop domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CKH5_9STRA2.460e-2079.25Nop domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2XZL3_9STRA1.130e-1680.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7U652_9STRA2.210e-1672.73U4 u6 small nuclear ribonucleoprotein prp31 n=1 Ta... [more]
A0A4D9DF62_9STRA9.720e-1572.73Nop domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S4DKU2_HETAK1.250e-1473.58Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2C7I0_9STRA1.790e-1473.08Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
B8C5F2_THAPS1.800e-1471.70Nop domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S1U3H0_9STRA1.180e-1364.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0BZY3_9STRA7.340e-1366.04Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13485contigE-fasciculatus_F_contig13485:1358..2013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue1.6e-21
Seed eggNOG ortholog2880.D8LKU3
Preferred namePRPF31
KEGG koko:K12844
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0001654,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005687,GO:0005690,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006325,GO:0006342,GO:0006346,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016569,GO:0016604,GO:0016607,GO:0017069,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030621,GO:0030622,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034708,GO:0035097,GO:0040029,GO:0043010,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0044877,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046540,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051716,GO:0060041,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070417,GO:0070990,GO:0071005,GO:0071011,GO:0071166,GO:0071339,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.spliceosomal tri-snRNP complex assembly
EggNOG OGsCOG1498@1,KOG2574@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927847.5621085-CDS-E-fasciculatus_F_contig13485:1357..14111622927847.5621085-CDS-E-fasciculatus_F_contig13485:1357..1411Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13485 1358..1411 +
1695995721.0994651-CDS-E-fasciculatus_F_contig13485:1357..14111695995721.0994651-CDS-E-fasciculatus_F_contig13485:1357..1411Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13485 1358..1411 +
1622927847.5793574-CDS-E-fasciculatus_F_contig13485:1905..20131622927847.5793574-CDS-E-fasciculatus_F_contig13485:1905..2013Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13485 1906..2013 +
1695995721.1195667-CDS-E-fasciculatus_F_contig13485:1905..20131695995721.1195667-CDS-E-fasciculatus_F_contig13485:1905..2013Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13485 1906..2013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13485.2605.1prot_E-fasciculatus_F_contig13485.2605.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13485 1358..2013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13485.2605.1

>prot_E-fasciculatus_F_contig13485.2605.1 ID=prot_E-fasciculatus_F_contig13485.2605.1|Name=mRNA_E-fasciculatus_F_contig13485.2605.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=54bp
SSGQTNGLNSSLVFTPIQGLELVNPNADKEKKVMAANKKWFDSSSGFMSA
KPK*
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mRNA from alignment at E-fasciculatus_F_contig13485:1358..2013+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13485.2605.1 ID=mRNA_E-fasciculatus_F_contig13485.2605.1|Name=mRNA_E-fasciculatus_F_contig13485.2605.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=656bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13485:1358..2013+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCTCCGGCCAGACGAACGGCCTCAACTCGAGCCTCGTCTTCACCCCCAT
CCAGGTACGTTGTTACTAACGGCACGCGCTTTGTTTATCTCTCTGTTTTC
TGTTGTGTTTTTATTTTAGCCACAAGAATCAAACACCAAGCATTCTACAT
TGTAGCCCCCGTGGTTATTTGAATTGTTGCCGTCTTCACCAAGGTGTGTC
GAATAGCGCATAAGTTGGTCGCATCAAGTCTTGTGCGGTTCGGAAGCGGT
CGTTGATCATGAAGTTCTAAGTAGAGTGGCGCTTTCACGAGAATATTTTA
GGAGCTGTAAAAACCAGGCGCCATATAGCCACAGCATGATTTTATCCGCG
ATACGCCCGACATTGCCTCCAATCATCGTGTTCTACACTTAGTTCACGTG
TTGAGCTCTTCACGTTAACACTCCGCCCCGAAACGTTCGATTGCTCCTGG
TTTTTGGTTTGTTAAACAATGACTAAACACTGACTGCGTGCATCCGGTTT
ACTTTTTTTTTTTCCCTTGTCCCGTCCTTGTGGTTGTGCCCGACACAGGG
CCTGGAGTTGGTGAACCCGAACGCGGACAAGGAGAAGAAGGTCATGGCGG
CAAACAAGAAGTGGTTCGACTCCAGCAGCGGCTTCATGTCGGCGAAGCCA
AAATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13485:1358..2013+

>mRNA_E-fasciculatus_F_contig13485.2605.1 ID=mRNA_E-fasciculatus_F_contig13485.2605.1|Name=mRNA_E-fasciculatus_F_contig13485.2605.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=324bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13485:1358..2013+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCTCCGGCCAGACGAACGGCCTCAACTCGAGCCTCGTCTTCACCCCCAT
CCAGAGCTCCGGCCAGACGAACGGCCTCAACTCGAGCCTCGTCTTCACCC
CCATCCAGGGCCTGGAGTTGGTGAACCCGAACGCGGACAAGGAGAAGAAG
GTCATGGCGGCAAACAAGAAGTGGTTCGACTCCAGCAGCGGCTTCATGTC
GGCGAAGCCAAAATAGGGCCTGGAGTTGGTGAACCCGAACGCGGACAAGG
AGAAGAAGGTCATGGCGGCAAACAAGAAGTGGTTCGACTCCAGCAGCGGC
TTCATGTCGGCGAAGCCAAAATAG
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