mRNA_E-fasciculatus_F_contig13483.2604.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13483.2604.1
Unique NamemRNA_E-fasciculatus_F_contig13483.2604.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13483.2604.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 660 bits (1702), Expect = 3.810e-215
Identity = 408/518 (78.76%), Postives = 413/518 (79.73%), Query Frame = 1 
Query:    1 QPTPVPRSFEELGLLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVSRTIYPDYYDVISEPMDLNKLWKRCSACRYRSVEEFKRELALVASNCRLYCQDKFPTLPPAADAAVNVGMETLDEPKLAAALGKTVEDGKRLEALWNKHMSAAISASPELATMPGMQKLARQLGFDTGTAEEDDNGRGGQESDEDDDYGQPDTASIARQVFYDKLVGIKYGTPDEXXXXXXXXXXXXXXXXXXXXXXXXXXFKKEPPKLDEP---RSPTANGVSPAP----------------QASPSATSPTAATKTADAPSSGAITVAAEGEASPTQPLSPGXXXXXXXXXXXXXTATGTPGTPPPGEQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAP--PAVAPGGVLRVSMRLSNEMPEFVVVTSKYDEAMTFHWRSEMHIQMAFMEEPGEPPRIFEGTLVGVKPKDPRTQMMPWECLMVEWDDEAGMNTVNPWEVEAVSAATAAARRRAPGMPGVGEHIG 1491
            +PTPVPRSFEELGLLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVSRTIYPDYYDVISEPMDLNKLWKRCSACRYRSVEEFKRELALVASNCRLYCQDKFPTLPPAADAAVNVGMETLDEPKLAA LGKTVEDGKRLEALWNKHMSAAISASPELATMPGMQKLARQLGFDTGTAEEDD GRGGQESDEDDDYGQPDTASIARQVFYDKLVGIKYGTPDE                           KK+PPKLDE    RSPTANGVSP P                QASPS                       E   S     +PG XXXXX   XXXX               XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AP  PAV PGGVLRVSMRLSNEMPEFVVVTSKYDEAMTF+WRSEMHIQMAFMEEPGEPPRIFEGTLVGVKPKDPRTQMMPWECLMVEWDDEAGMNTVNPWEVEAVSAATAAARRRAPG+PGVGEHIG
Sbjct: 1681 EPTPVPRSFEELGLLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVSRTIYPDYYDVISEPMDLNKLWKRCSACRYRSVEEFKRELALVASNCRLYCQDKFPTLPPAADAAVNVGMETLDEPKLAAELGKTVEDGKRLEALWNKHMSAAISASPELATMPGMQKLARQLGFDTGTAEEDDIGRGGQESDEDDDYGQPDTASIARQVFYDKLVGIKYGTPDEEEKHQTDGSDSGDA-------------KKKPPKLDETPEARSPTANGVSPTPPSPGXXXXXXXXXXXPQASPSXXXXXXXXXXXXXXXXXXXXXXGEASPSSAATCAPGAXXXXXTPDXXXXXXX------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAPVAPAVVPGGVLRVSMRLSNEMPEFVVVTSKYDEAMTFNWRSEMHIQMAFMEEPGEPPRIFEGTLVGVKPKDPRTQMMPWECLMVEWDDEAGMNTVNPWEVEAVSAATAAARRRAPGIPGVGEHIG 2173
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13483.2604.1 vs. uniprot
Match: A0A6H5L3E5_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E5_9PHAE)

HSP 1 Score: 617 bits (1592), Expect = 2.570e-213
Identity = 405/592 (68.41%), Postives = 411/592 (69.43%), Query Frame = 1 
Query:    1 QPTPVPRSFEELGLLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVSRTIYPDYYDVISEPMDLNKLWKRCSACRYRSVEEFKRELALVASNCRLYCQDKFPTLPPAADAAVNVGMETLDEPKLAAALGKTVEDGKRLEALWNKHMSAAISASPELATMPGMQKLARQLGFDTGTAEEDDNGRGGQESDEDDDYGQPDTASIARQVFYDKLVGIKYGTPDEXXXXXXXXXXXXXXXXXXXXXXXXXXFKKEPPKLDEP---RSPTANGVSPAPQASPSATSPTAATKTADAPSSGAITV--------------------------------------------------------------------------------------------AAEGEASPTQPLSPGXXXXXXXXXXXXXTATGTPGTPPPGEQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPPAVAPGGVLRVSMRLSNEMPEFVVVTSKYDEAMTFHWRSEMHIQMAFMEEPGEPPRIFEGTLVGVKPKDPRTQMMPWECLMVEWDDEAGMNTVNPWEVEAVSAATAAARRRAPGMPGVGEHIG 1491
            +PTPVPRSFEELGLLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVSRTIYPDYYDVISEPMDLNKLWKRCSACRYRSVEEFKRELALVASNCRLYCQDKFPTLPPAADAAVNVGMETLDEPKLAA L KTVEDGKRLEALWNKHMSAAISASPELATMPGMQKLARQLGFDTG AEEDD GRGGQESDEDDDYGQPDTASIARQVFYDKLVGIKYGTPDE                           KK+P  LDE    RSPTANGVSP P                  P SG                                                                                                AA    SP+   SP XXXXXXXXXXXXX               XXXXXXXXXXXXXXXXXXXXXXXXXXXX  VAP A+APGGV RVSMRLSNEMPEFVVV SKYDEAMTF+WRSEMHIQMAFMEEPGEPPRIFEGTLVGVKPKDPRTQMMPWECL+VEWDDEAGMNTVNPWEVEAVSAATAAARRRAPGMPGVGEHIG
Sbjct:  210 EPTPVPRSFEELGLLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVSRTIYPDYYDVISEPMDLNKLWKRCSACRYRSVEEFKRELALVASNCRLYCQDKFPTLPPAADAAVNVGMETLDEPKLAAELSKTVEDGKRLEALWNKHMSAAISASPELATMPGMQKLARQLGFDTGAAEEDDVGRGGQESDEDDDYGQPDTASIARQVFYDKLVGIKYGTPDEGEKQKTDGNDSSD-------------VKKKPSILDETPEARSPTANGVSPTPLW----------------PGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASQPRSPSTAASPXXXXXXXXXXXXXXXXX-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVAP-AIAPGGVFRVSMRLSNEMPEFVVVASKYDEAMTFNWRSEMHIQMAFMEEPGEPPRIFEGTLVGVKPKDPRTQMMPWECLIVEWDDEAGMNTVNPWEVEAVSAATAAARRRAPGMPGVGEHIG 760
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13483.2604.1 vs. uniprot
Match: I2CQX7_NANGC (Transcription initiation factor TFIID subunit 1 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQX7_NANGC)

HSP 1 Score: 90.9 bits (224), Expect = 1.840e-15
Identity = 49/121 (40.50%), Postives = 64/121 (52.89%), Query Frame = 1 
Query:   31 ELGLLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVSRTIYPDYYDVISEPMDLNKLWKRCSACRYRSVEEFKRELALVASNCRLYCQDKFPTLPPAADAAVNVGMETLD--EPKLAAA 387
            +L L  P EP   L+RLL + V +  E  +   F  PV R  YPDYY++I  PMD   L  R     Y  +  F ++L L++ NC  YC  +FPTLP  AD  V V  ET+   EPK+  A
Sbjct:  627 KLRLYRPVEPRASLSRLLARVVLSAMELREADQFCEPVDRNEYPDYYEMIWNPMDFTTLLSRVRRHMYGELSTFLKDLELISRNCHAYCDARFPTLPVLADQVVGVAKETVKYLEPKIRKA 747
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13483.2604.1 vs. uniprot
Match: W7U279_9STRA (Transcription initiation factor subunit taf1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U279_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.050e-15
Identity = 49/121 (40.50%), Postives = 64/121 (52.89%), Query Frame = 1 
Query:   31 ELGLLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVSRTIYPDYYDVISEPMDLNKLWKRCSACRYRSVEEFKRELALVASNCRLYCQDKFPTLPPAADAAVNVGMETLD--EPKLAAA 387
            +L L  P EP   L+RLL + V +  E  +   F  PV R  YPDYY++I  PMD   L  R     Y  +  F ++L L++ NC  YC  +FPTLP  AD  V V  ET+   EPK+  A
Sbjct: 1618 KLRLYRPVEPRASLSRLLARVVLSAMELREADQFCEPVDRNEYPDYYEMIWNPMDFTTLLSRVRRHMYGELSTFLKDLELISRNCHAYCDARFPTLPVLADQVVGVAKETVKYLEPKIRKA 1738
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13483.2604.1 vs. uniprot
Match: A0A835ZDW7_9STRA (Bromo domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.700e-15
Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 1 
Query:   28 EELGLLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVSRTIYPDYYDVISEPMDLNKLWKRCSACRYRSVEEFKRELALVASNCRLYCQDKFPTLPPAADAAVNVGMETLDEPKL 378
            E LGL PP +  G LNRLL++++           F+ PV  +  PDY +V++ PMDL  +W++     Y ++E+F+++LALV  NC  YC  ++P L    +  V    +TL  P+L
Sbjct: 1870 EPLGLKPPGDSRGMLNRLLRRSLAVASRTPGSQPFMQPVDYSTNPDYREVVARPMDLGTIWRQTVEGHYATLEQFEQDLALVLDNCHAYCDSRYPWLSKDCERVVKAARDTLAHPEL 1986
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13483.2604.1 vs. uniprot
Match: A0A418B6I9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B6I9_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 8.870e-14
Identity = 43/119 (36.13%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:   67 KLNRLLKKAVKAMRERADVAHFLVPVSRTIYPDYYDVISEPMDLNKLWKRCSACRYRSVEEFKRELALVASNCRLYCQDKFPTLPPAADAAVNVGMETLDE--PKLAAALGKTVEDGKR 417
            KL R+L + V  +R   D   FL PVS+  +P Y D+I  PMDL+K+ +     +Y++V+EF  ++ L+A NC+L+C+ +FPTLPP A   V +    + +   +L AA G    + ++
Sbjct:  945 KLGRILARIVSKLRAEPDAGPFLDPVSKADFPTYTDIIVHPMDLSKISQNVHDGKYKTVDEFVGDVKLMADNCQLFCEGRFPTLPPMARHLVTLCQNLVKKHASELKAAAGDIAREQRK 1063
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BLAST of mRNA_E-fasciculatus_F_contig13483.2604.1 vs. uniprot
Match: A0A024TEJ5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEJ5_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 9.860e-14
Identity = 43/119 (36.13%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:   67 KLNRLLKKAVKAMRERADVAHFLVPVSRTIYPDYYDVISEPMDLNKLWKRCSACRYRSVEEFKRELALVASNCRLYCQDKFPTLPPAADAAVNVGMETLDE--PKLAAALGKTVEDGKR 417
            KL R+L + V  +R   D   FL PVS+  +P Y D+I  PMDL+K+ +     +Y++V+EF  ++ L+A NC+L+C+ +FPTLPP A   V +    + +   +L AA G    + ++
Sbjct: 1465 KLGRILARIVSKLRAEPDAGPFLDPVSKADFPTYTDIIVHPMDLSKISQNVHDGKYKTVDEFVGDVKLMADNCQLFCEGRFPTLPPMARHLVTLCQNLVKKHASELKAAAGDIAREQRK 1583
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BLAST of mRNA_E-fasciculatus_F_contig13483.2604.1 vs. uniprot
Match: A0A485LQJ0_9STRA (Aste57867_24503 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQJ0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.280e-13
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 1 
Query:   31 ELGLLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVSRTIYPDYYDVISEPMDLNKLWKRCSACRYRSVEEFKRELALVASNCRLYCQDKFPTLPPAADAAVNVGMETLDE--PKLAAALGKTVE 405
            EL   PP+    +L R+L + V  +R   D   FL PVS+  +P Y D+I +PMDL+K+  +    +Y +V++F  +L L+A NC L+C+ +FPTLPP A   V +    + +   +L AA+G + E
Sbjct: 1421 ELLCTPPSS-VQRLGRVLMRIVGKLRSDPDSGPFLEPVSKVDFPTYTDIILKPMDLSKIANKVKTEKYNNVKDFVDDLKLMADNCSLFCEGRFPTLPPMARHLVTICEALVKKYSSELKAAIGNSNE 1546
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13483.2604.1 vs. uniprot
Match: A0A8K1CUW3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUW3_PYTOL)

HSP 1 Score: 84.3 bits (207), Expect = 2.350e-13
Identity = 38/103 (36.89%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:   40 LLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVSRTIYPDYYDVISEPMDLNKLWKRCSACRYRSVEEFKRELALVASNCRLYCQDKFPTLPPAADAAVNV 348
            L P   P  +L R L++ V  ++   D   FL PVS   +P+Y ++I  PMDL+K+  +   C Y+SV+ F  ++ L++SNC ++C+ +FP LPP A   V++
Sbjct: 1674 LCPQPSPLQRLARTLQRIVTKIKLNPDAGPFLEPVSDRDFPEYKEIIPHPMDLSKISAKIKGCEYKSVDSFLSDVKLMSSNCTVFCEGRFPALPPLARNLVDL 1776
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13483.2604.1 vs. uniprot
Match: A0A2D4C0X0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0X0_PYTIN)

HSP 1 Score: 82.0 bits (201), Expect = 1.040e-12
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:   40 LLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVSRTIYPDYYDVISEPMDLNKLWKRCSACRYRSVEEFKRELALVASNCRLYCQDKFPTLPPAADAAVNV 348
            + PP  P  +L R+L +    +R   D A F+ PVS   +P+Y ++I  PMDL+K+  +   C Y S  +F  ++ L+ +NC L+C+ +FP LPP A   V++
Sbjct:  729 ICPPPTPSQQLARVLVRITSKLRAHPDSAPFMDPVSDRDFPEYKEIIPRPMDLSKVHVKARKCEYASAADFLDDIRLICNNCELFCEGRFPDLPPLARNLVDL 831
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13483.2604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6R7_ECTSI3.810e-21578.76Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L3E5_9PHAE2.570e-21368.41Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
I2CQX7_NANGC1.840e-1540.50Transcription initiation factor TFIID subunit 1 (F... [more]
W7U279_9STRA2.050e-1540.50Transcription initiation factor subunit taf1 n=2 T... [more]
A0A835ZDW7_9STRA2.700e-1535.90Bromo domain-containing protein n=1 Tax=Tribonema ... [more]
A0A418B6I9_9STRA8.870e-1436.13Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024TEJ5_9STRA9.860e-1436.13Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485LQJ0_9STRA2.280e-1337.01Aste57867_24503 protein n=1 Tax=Aphanomyces stella... [more]
A0A8K1CUW3_PYTOL2.350e-1336.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C0X0_PYTIN1.040e-1235.92Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13483contigE-fasciculatus_F_contig13483:52..3543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score665.6
Seed ortholog evalue1.8e-188
Seed eggNOG ortholog2880.D7G6R7
KEGG koko:K03125
KEGG Pathwayko03022,map03022
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons7
Model size1494
Cds size1494
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927847.4347446-CDS-E-fasciculatus_F_contig13483:51..2691622927847.4347446-CDS-E-fasciculatus_F_contig13483:51..269Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13483 52..269 -
1695995721.0233543-CDS-E-fasciculatus_F_contig13483:51..2691695995721.0233543-CDS-E-fasciculatus_F_contig13483:51..269Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13483 52..269 -
1622927847.4496384-CDS-E-fasciculatus_F_contig13483:719..10781622927847.4496384-CDS-E-fasciculatus_F_contig13483:719..1078Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13483 720..1078 -
1695995721.0337803-CDS-E-fasciculatus_F_contig13483:719..10781695995721.0337803-CDS-E-fasciculatus_F_contig13483:719..1078Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13483 720..1078 -
1622927847.4653335-CDS-E-fasciculatus_F_contig13483:1285..15811622927847.4653335-CDS-E-fasciculatus_F_contig13483:1285..1581Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13483 1286..1581 -
1695995721.0451474-CDS-E-fasciculatus_F_contig13483:1285..15811695995721.0451474-CDS-E-fasciculatus_F_contig13483:1285..1581Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13483 1286..1581 -
1622927847.476984-CDS-E-fasciculatus_F_contig13483:2021..21361622927847.476984-CDS-E-fasciculatus_F_contig13483:2021..2136Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13483 2022..2136 -
1695995721.0565782-CDS-E-fasciculatus_F_contig13483:2021..21361695995721.0565782-CDS-E-fasciculatus_F_contig13483:2021..2136Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13483 2022..2136 -
1622927847.488877-CDS-E-fasciculatus_F_contig13483:2292..24531622927847.488877-CDS-E-fasciculatus_F_contig13483:2292..2453Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13483 2293..2453 -
1695995721.0641658-CDS-E-fasciculatus_F_contig13483:2292..24531695995721.0641658-CDS-E-fasciculatus_F_contig13483:2292..2453Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13483 2293..2453 -
1622927847.504465-CDS-E-fasciculatus_F_contig13483:2855..30371622927847.504465-CDS-E-fasciculatus_F_contig13483:2855..3037Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13483 2856..3037 -
1695995721.0719125-CDS-E-fasciculatus_F_contig13483:2855..30371695995721.0719125-CDS-E-fasciculatus_F_contig13483:2855..3037Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13483 2856..3037 -
1622927847.5191922-CDS-E-fasciculatus_F_contig13483:3380..35431622927847.5191922-CDS-E-fasciculatus_F_contig13483:3380..3543Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13483 3381..3543 -
1695995721.079826-CDS-E-fasciculatus_F_contig13483:3380..35431695995721.079826-CDS-E-fasciculatus_F_contig13483:3380..3543Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13483 3381..3543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13483.2604.1prot_E-fasciculatus_F_contig13483.2604.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13483 52..3543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13483.2604.1

>prot_E-fasciculatus_F_contig13483.2604.1 ID=prot_E-fasciculatus_F_contig13483.2604.1|Name=mRNA_E-fasciculatus_F_contig13483.2604.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=498bp
QPTPVPRSFEELGLLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVSR
TIYPDYYDVISEPMDLNKLWKRCSACRYRSVEEFKRELALVASNCRLYCQ
DKFPTLPPAADAAVNVGMETLDEPKLAAALGKTVEDGKRLEALWNKHMSA
AISASPELATMPGMQKLARQLGFDTGTAEEDDNGRGGQESDEDDDYGQPD
TASIARQVFYDKLVGIKYGTPDEEEKKTNKTTTNGSNSSSSSSSSSSSDF
KKEPPKLDEPRSPTANGVSPAPQASPSATSPTAATKTADAPSSGAITVAA
EGEASPTQPLSPGSPAAAAAAAAAGVTATGTPGTPPPGEQEKKQSEEVAA
DASKEEGAGGGAAAAEAAAAPVAPPAVAPGGVLRVSMRLSNEMPEFVVVT
SKYDEAMTFHWRSEMHIQMAFMEEPGEPPRIFEGTLVGVKPKDPRTQMMP
WECLMVEWDDEAGMNTVNPWEVEAVSAATAAARRRAPGMPGVGEHIG*
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mRNA from alignment at E-fasciculatus_F_contig13483:52..3543-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13483.2604.1 ID=mRNA_E-fasciculatus_F_contig13483.2604.1|Name=mRNA_E-fasciculatus_F_contig13483.2604.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3492bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13483:52..3543- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCCCACCCCGGTGCCCCGATCTTTCGAAGAACTGGGTCTGCTGCCTCC
CACAGAGCCGTTCGGCAAGCTGAACCGGCTGTTGAAGAAGGCCGTCAAGG
CCATGAGGGAGAGGGCTGACGTAGCTCACTTCCTCGTACCTGTGAGCAGG
ACGATATACCCAGGTGGGAGATGGTGCAGGCATGTTTGCGGCGAGGGAGT
AGCAGCAGCAGCGGCGGCGGCGTGTCTGGTTTCCTGGTGTTCGCTGTGTA
CAGTAGGTGCTCGGGTAAATCCCGATTCGGTCCCTTTAATTATTCACTTA
CATACTGAGTATTATCAGGATTGGGACTGTTTGCAGTGCGGCATCGATGG
CTGTTCCCGCAACCCTAGGTACAATAGATGTGTCCGATGCAATATCATGT
GAAAAATGTAGCCGATTGGGATCTTGCTACATCAACACAACGCCTCTCTT
TTCTCGTACCGTGATTATCCGTTTTCCTCTCCTTCTCCTTGACACACGAC
AAATAGACTACTACGACGTGATCTCGGAGCCGATGGACCTGAACAAGCTG
TGGAAGCGGTGCTCGGCGTGCCGTTACCGCTCGGTAGAGGAGTTCAAGCG
CGAGTTGGCCTTGGTCGCCTCTAACTGCCGCCTCTACTGCCAGGACAAGT
TCCCGACCCTACCCCCAGCGGCGGACGCCGCGGTGAATGTGAGACTTGTC
ACTCACATGACGTCACACCACAATCACCTGGCTTGCTCTATCTACGTACA
TTTGTTACAAAGGGGTATCTTGAGCACAACACCGCTCTTCGATTCTAGTC
ACAAGAAAAGAAAGGCCGTGGAGCGTTCCAGAGGTTGTGGGCAGAACGGC
CGTCGTCTGGCGCGTTGGTATTATAGGGTAAAGTAACCCGGAACAGCCTT
TGCATTCCACGGGGCGCACAGCAGTGATAGGTTTTGACCTCTGGAACGTG
TAAGGCGGAAGGCTTGTTTTTGATTCCAGTCTCCCCTGGTGCTGCTACCT
AACGCCTAACGCCTAACGCCTAACTTCGTTGTTTGTGCACTTGTCGGTGC
GGTTTGCCGTGCCCCCCGTATTACCTGACGTGCTTCCTAGGTTGGAATGG
AGACTCTAGATGAGCCGAAGCTGGCTGCCGCGCTTGGCAAGACGGTGGAA
GACGGGAAGAGGCTGGAGGCGCTGTGGAACAAGCACATGTCGGCCGCCAT
TAGCGCCTCGCCTGAGCTCGCCACCATGCCTGGCATGCAGAAGCTCGCAA
GGTATCCGTCTACTGCCTGTACCCATTGCGTTGGTCGCCGTCCCTTTCCG
TTCCGAATGTGATGCAGCGTGAGACCTTGTAGTTTCAAACGACGGTTTTT
AAATGGCGTCTCGATCGATTCTGTTGCTGTCTCTCTGCCTGCCTTTGGAC
GATTCAGGCAACTGGGCTTTGATACGGGAACTGCCGAGGAAGATGACAAC
GGACGCGGGGGGCAGGAGAGCGACGAAGACGACGACTACGGACAACCGGA
CACGGCCAGCATCGCGCGACAGGTGACCGCAGTGTTCGACGACAACGTGT
CTTGGCACCACGTCAGGGCCCGTATTTATCATGGCGGTCTTGCTTGATCT
ACTCGGGTTTAACTTCTGGGTGCATCCCCTTTCTAGTGGTGCATTTATTT
TTTTGGATCTATGCGCTGTTAGTTTTGGCAATCTGCCGACGTCAGTGCTT
TGAAGTGGATAACGTGGGTTCTATCGTGATTGTTCGCTTATAACAAGCAG
GGCGAGGGCCCGACTATATCGCGTACTTCGCGGTGGTTGCTGCTTTCCCT
TTCGCACTTTACACTTTACACTAGCGCTCACACATAGCATTTCTGCCCGA
GCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCGTACCATCTAACCCTCAAATCACGTCGATGTCGTTCCCTTTTTTG
TTGTACTGCCAGGTGTTCTACGACAAGCTGGTGGGCATCAAGTACGGCAC
CCCCGACGAGGAAGAAAAAAAGACAAATAAGACAACAACCAATGGCAGCA
ACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACTTCAAGAAAGAG
CCTCCAAAACTCGACGAACCCCGGTCGCCGACGGCCAATGGTGTCTCTCC
TGCACCGCAAGCGTCGCCGTCGGCAACTTCGCCGACTGCGGCGACGAAGA
CGGCCGACGCACCTTCGTCGGGTGCGATTACAGTTGCGGCGGAGGGGGAA
GCCTCGCCGTCTTCTGCTGCGGCTGGCGCGCCTGATGATGCCGGCGCCGC
CGCCGCTGCTGCTGCTGCAGGCCCCGAGCCAATGGACGTCGATTCGGGGT
GCGCCGAACCGAAGACTGGTGTGTCTGGTGTGTCTGGTGTGTCATCACCA
TCACCGACGAGAACTTCATCGTCGCCACCATCACCATCACCATCACCATC
AGCAGCAGCAGCTAGTACGCAGCCCCTTTCGCCCGGATCACCGGCAGCAG
CAGCAGCAGCAGCAGCAGCAGGAGTAACCGCTACGGGGACCCCAGGCACG
CCTCCGCCCGGAGAGCAGGAGAAGAAGCAGTCGGAGGAGGTGGCCGCAGA
CGCGTCGAAGGAAGAAGGCGCCGGGGGTGGGGCGGCGGCGGCGGAGGCAG
CGGCGGCACCGGTGGCGCCGCCGGCAGTAGCGCCCGGGGGGGTGTTGAGG
GTTTCTATGCGGCTTAGCAACGAGATGCCGGAGTTCGTCGTGGTGACGTC
GAAGTACGACGAGGCCATGACCTTCCACTGGAGGTCGGAGATGCACATAC
AGATGGCCTTCATGGAGGAGCCAGGTGCGTGCCATACCGTACCGTGCCAA
GCACTATGTAGTTGACGTTATATTCTGTTATGGCGTTCGCGTGGCTTTTT
CCAGGTGCACTTTGGCTTTTGCTTGCCCTTTTCACATTTCTTTCTGGTGG
GCATGCTCCTGGAAATACATACCCCTCTTTGTTTTGGGTGGATTGTGCTG
GGCGTTCGTGTTCGCCCAGCCGGTTGGGCGTGAGCTAGGCATCCCTATGA
TGTGTCTTCGGTACGGAGCACCCGCCAAAGACCACTCCTCCCGTGTGTGT
GCTTCGGTAGGAACGGACCCCCCCCCTCCTCAAAAATAACGAAGAAAAGT
ATGCCTACTTGATGCAAGCCCAAACCGGCACGCCGCTTCGCCCAAGCCCT
CACCCCGTTTCCCTCCCCAAACCCGTTGCCGCCGCGTGGTCCTCTTCCGG
GTTGACACACGTTTTACTCACCAGGGGAGCCGCCCCGCATCTTCGAGGGC
ACCCTGGTGGGGGTGAAGCCTAAAGACCCCCGCACGCAGATGATGCCATG
GGAGTGCCTGATGGTGGAGTGGGACGACGAGGCGGGGATGAACACTGTCA
ACCCTTGGGAGGTGGAGGCTGTGTCGGCAGCAACGGCCGCCGCGCGACGC
CGCGCGCCGGGGATGCCGGGGGTAGGAGAGCACATAGGTTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13483:52..3543-

>mRNA_E-fasciculatus_F_contig13483.2604.1 ID=mRNA_E-fasciculatus_F_contig13483.2604.1|Name=mRNA_E-fasciculatus_F_contig13483.2604.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2988bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13483:52..3543- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCCCACCCCGGTGCCCCGATCTTTCGAAGAACTGGGTCTGCTGCCTCC
CACAGAGCCGTTCGGCAAGCTGAACCGGCTGTTGAAGAAGGCCGTCAAGG
CCATGAGGGAGAGGGCTGACGTAGCTCACTTCCTCGTACCTGTGAGCAGG
ACGATATACCCAGCAGCCCACCCCGGTGCCCCGATCTTTCGAAGAACTGG
GTCTGCTGCCTCCCACAGAGCCGTTCGGCAAGCTGAACCGGCTGTTGAAG
AAGGCCGTCAAGGCCATGAGGGAGAGGGCTGACGTAGCTCACTTCCTCGT
ACCTGTGAGCAGGACGATATACCCAGACTACTACGACGTGATCTCGGAGC
CGATGGACCTGAACAAGCTGTGGAAGCGGTGCTCGGCGTGCCGTTACCGC
TCGGTAGAGGAGTTCAAGCGCGAGTTGGCCTTGGTCGCCTCTAACTGCCG
CCTCTACTGCCAGGACAAGTTCCCGACCCTACCCCCAGCGGCGGACGCCG
CGGTGAATACTACTACGACGTGATCTCGGAGCCGATGGACCTGAACAAGC
TGTGGAAGCGGTGCTCGGCGTGCCGTTACCGCTCGGTAGAGGAGTTCAAG
CGCGAGTTGGCCTTGGTCGCCTCTAACTGCCGCCTCTACTGCCAGGACAA
GTTCCCGACCCTACCCCCAGCGGCGGACGCCGCGGTGAATGTTGGAATGG
AGACTCTAGATGAGCCGAAGCTGGCTGCCGCGCTTGGCAAGACGGTGGAA
GACGGGAAGAGGCTGGAGGCGCTGTGGAACAAGCACATGTCGGCCGCCAT
TAGCGCCTCGCCTGAGCTCGCCACCATGCCTGGCATGCAGAAGCTCGCAA
GGTTGGAATGGAGACTCTAGATGAGCCGAAGCTGGCTGCCGCGCTTGGCA
AGACGGTGGAAGACGGGAAGAGGCTGGAGGCGCTGTGGAACAAGCACATG
TCGGCCGCCATTAGCGCCTCGCCTGAGCTCGCCACCATGCCTGGCATGCA
GAAGCTCGCAAGGCAACTGGGCTTTGATACGGGAACTGCCGAGGAAGATG
ACAACGGACGCGGGGGGCAGGAGAGCGACGAAGACGACGACTACGGACAA
CCGGACACGGCCAGCATCGCGCGACAGGCAACTGGGCTTTGATACGGGAA
CTGCCGAGGAAGATGACAACGGACGCGGGGGGCAGGAGAGCGACGAAGAC
GACGACTACGGACAACCGGACACGGCCAGCATCGCGCGACAGGTGTTCTA
CGACAAGCTGGTGGGCATCAAGTACGGCACCCCCGACGAGGAAGAAAAAA
AGACAAATAAGACAACAACCAATGGCAGCAACAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCGACTTCAAGAAAGAGCCTCCAAAACTCGACGAACC
CCGGTCGCCGACGGCCAATGGTGTCTCTCCTGCACCGCAAGCGTCGCCGT
CGGCAACTTCGCCGACTGCGGCGACGAAGACGGCCGACGCACCTTCGTCG
GGTGCGATTACAGTTGCGGCGGAGGGGGAAGCCTCGCCGTGTTCTACGAC
AAGCTGGTGGGCATCAAGTACGGCACCCCCGACGAGGAAGAAAAAAAGAC
AAATAAGACAACAACCAATGGCAGCAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCGACTTCAAGAAAGAGCCTCCAAAACTCGACGAACCCCGG
TCGCCGACGGCCAATGGTGTCTCTCCTGCACCGCAAGCGTCGCCGTCGGC
AACTTCGCCGACTGCGGCGACGAAGACGGCCGACGCACCTTCGTCGGGTG
CGATTACAGTTGCGGCGGAGGGGGAAGCCTCGCCTACGCAGCCCCTTTCG
CCCGGATCACCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGTAACCGC
TACGGGGACCCCAGGCACGCCTCCGCCCGGAGAGCAGGAGAAGAAGCAGT
CGGAGGAGGTGGCCGCAGACGCGTCGAAGGAAGAAGGCGCCGGGGGTGGG
GCGGCGGCGGCGGAGGCAGCGGCGGCACCGGTGGCGCCGCCGGCAGTAGC
GCCCGGGGGGGTGTTGAGGGTTTCTATGCGGCTTAGCAACGAGATGCCGG
AGTTCGTCGTGGTGACGTCGAAGTACGACGAGGCCATGACCTTCCACTGG
AGGTCGGAGATGCACATACAGATGGCCTTCATGGAGGAGCCAGTACGCAG
CCCCTTTCGCCCGGATCACCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGG
AGTAACCGCTACGGGGACCCCAGGCACGCCTCCGCCCGGAGAGCAGGAGA
AGAAGCAGTCGGAGGAGGTGGCCGCAGACGCGTCGAAGGAAGAAGGCGCC
GGGGGTGGGGCGGCGGCGGCGGAGGCAGCGGCGGCACCGGTGGCGCCGCC
GGCAGTAGCGCCCGGGGGGGTGTTGAGGGTTTCTATGCGGCTTAGCAACG
AGATGCCGGAGTTCGTCGTGGTGACGTCGAAGTACGACGAGGCCATGACC
TTCCACTGGAGGTCGGAGATGCACATACAGATGGCCTTCATGGAGGAGCC
AGGGGAGCCGCCCCGCATCTTCGAGGGCACCCTGGTGGGGGTGAAGCCTA
AAGACCCCCGCACGCAGATGATGCCATGGGAGTGCCTGATGGTGGAGTGG
GACGACGAGGCGGGGATGAACACTGTCAACCCTTGGGAGGTGGAGGCTGT
GTCGGCAGCAACGGCCGCCGCGCGACGCCGCGCGCCGGGGATGCCGGGGG
TAGGAGAGCACATAGGTTAGGGGAGCCGCCCCGCATCTTCGAGGGCACCC
TGGTGGGGGTGAAGCCTAAAGACCCCCGCACGCAGATGATGCCATGGGAG
TGCCTGATGGTGGAGTGGGACGACGAGGCGGGGATGAACACTGTCAACCC
TTGGGAGGTGGAGGCTGTGTCGGCAGCAACGGCCGCCGCGCGACGCCGCG
CGCCGGGGATGCCGGGGGTAGGAGAGCACATAGGTTAG
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