mRNA_E-fasciculatus_F_contig13468.2595.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13468.2595.1
Unique NamemRNA_E-fasciculatus_F_contig13468.2595.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13468.2595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13468contigE-fasciculatus_F_contig13468:499..978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size482
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927846.4356732-CDS-E-fasciculatus_F_contig13468:498..9781622927846.4356732-CDS-E-fasciculatus_F_contig13468:498..978Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13468 499..978 +
1695995720.528025-CDS-E-fasciculatus_F_contig13468:498..9781695995720.528025-CDS-E-fasciculatus_F_contig13468:498..978Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13468 499..978 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13468.2595.1prot_E-fasciculatus_F_contig13468.2595.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13468 499..978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13468.2595.1

>prot_E-fasciculatus_F_contig13468.2595.1 ID=prot_E-fasciculatus_F_contig13468.2595.1|Name=mRNA_E-fasciculatus_F_contig13468.2595.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=160bp
DHLSSQQWKHTSCHATREAKRKISQGSRRLRVIQRRRMGIPHAVHPSQFS
SVVSRLRARYPRISAVPNIYLLCMVVSKKVSNAPPFTCSTATATSWRIHG
LQNSRLPTLETTWVCSSRRPHPLLLLSCDAMDAITYALRQRPPGSLAFVI
EPSLRRGED*
back to top

mRNA from alignment at E-fasciculatus_F_contig13468:499..978+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13468.2595.1 ID=mRNA_E-fasciculatus_F_contig13468.2595.1|Name=mRNA_E-fasciculatus_F_contig13468.2595.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=480bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13468:499..978+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATCACTTGTCATCACAACAATGGAAGCACACATCTTGTCATGCCACTCG
TGAGGCGAAGCGGAAAATATCACAGGGGTCACGGCGCCTACGGGTAATCC
AGCGACGACGCATGGGCATTCCTCATGCCGTCCATCCCTCCCAGTTCAGT
TCCGTGGTTTCGCGGCTGAGAGCTCGTTATCCCCGCATTTCAGCAGTGCC
AAACATATATTTGCTCTGTATGGTGGTATCGAAAAAAGTGTCTAACGCGC
CACCATTTACATGTAGTACAGCAACGGCAACATCCTGGCGGATCCACGGG
CTACAAAACTCGCGCTTGCCAACCCTCGAGACTACGTGGGTCTGTAGTTC
ACGGAGACCACATCCACTATTGCTGCTGTCGTGTGACGCGATGGACGCGA
TAACCTATGCCCTGAGGCAACGCCCCCCGGGTTCGCTCGCATTCGTGATC
GAGCCTTCTCTGCGTCGAGGCGAAGATTAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13468:499..978+

>mRNA_E-fasciculatus_F_contig13468.2595.1 ID=mRNA_E-fasciculatus_F_contig13468.2595.1|Name=mRNA_E-fasciculatus_F_contig13468.2595.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=960bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13468:499..978+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATCACTTGTCATCACAACAATGGAAGCACACATCTTGTCATGCCACTCG
TGAGGCGAAGCGGAAAATATCACAGGGGTCACGGCGCCTACGGGTAATCC
AGCGACGACGCATGGGCATTCCTCATGCCGTCCATCCCTCCCAGTTCAGT
TCCGTGGTTTCGCGGCTGAGAGCTCGTTATCCCCGCATTTCAGCAGTGCC
AAACATATATTTGCTCTGTATGGTGGTATCGAAAAAAGTGTCTAACGCGC
CACCATTTACATGTAGTACAGCAACGGCAACATCCTGGCGGATCCACGGG
CTACAAAACTCGCGCTTGCCAACCCTCGAGACTACGTGGGTCTGTAGTTC
ACGGAGACCACATCCACTATTGCTGCTGTCGTGTGACGCGATGGACGCGA
TAACCTATGCCCTGAGGCAACGCCCCCCGGGTTCGCTCGCATTCGTGATC
GAGCCTTCTCTGCGTCGAGGCGAAGATTAGGATCACTTGTCATCACAACA
ATGGAAGCACACATCTTGTCATGCCACTCGTGAGGCGAAGCGGAAAATAT
CACAGGGGTCACGGCGCCTACGGGTAATCCAGCGACGACGCATGGGCATT
CCTCATGCCGTCCATCCCTCCCAGTTCAGTTCCGTGGTTTCGCGGCTGAG
AGCTCGTTATCCCCGCATTTCAGCAGTGCCAAACATATATTTGCTCTGTA
TGGTGGTATCGAAAAAAGTGTCTAACGCGCCACCATTTACATGTAGTACA
GCAACGGCAACATCCTGGCGGATCCACGGGCTACAAAACTCGCGCTTGCC
AACCCTCGAGACTACGTGGGTCTGTAGTTCACGGAGACCACATCCACTAT
TGCTGCTGTCGTGTGACGCGATGGACGCGATAACCTATGCCCTGAGGCAA
CGCCCCCCGGGTTCGCTCGCATTCGTGATCGAGCCTTCTCTGCGTCGAGG
CGAAGATTAG
back to top