mRNA_E-fasciculatus_F_contig1346.2591.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1346.2591.1
Unique NamemRNA_E-fasciculatus_F_contig1346.2591.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1346.2591.1 vs. uniprot
Match: D7G247_ECTSI (NB-ARC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G247_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 5.720e-61
Identity = 102/118 (86.44%), Postives = 107/118 (90.68%), Query Frame = 1
Query:    1 IADLASRVKIPSGAPRVRDWYVERRAEVAQACDHLEI-ASSRDSSD-GNPAKNPRVV-GLAGPGGAGKSTVASMVIAREDVRASFHKGVLWLPVGQGAKDRLPSLMLDLAGMVHKTAL 345
            +ADLASRVKIPSG PRVRDWYV+RRAEVA ACDHLEI +SSRDS +  N A+N RVV GLAGPGGAGKSTVASMVI REDVRASFHKGVLWLPVGQGAKDRLPS MLDLAGMVHKTAL
Sbjct:    1 MADLASRVKIPSGTPRVRDWYVQRRAEVAHACDHLEITSSSRDSFERNNSAENQRVVFGLAGPGGAGKSTVASMVITREDVRASFHKGVLWLPVGQGAKDRLPSPMLDLAGMVHKTAL 118          
BLAST of mRNA_E-fasciculatus_F_contig1346.2591.1 vs. uniprot
Match: A0A6H5KZP3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZP3_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 3.460e-34
Identity = 67/111 (60.36%), Postives = 84/111 (75.68%), Query Frame = 1
Query:   13 ASRVKIPSGAPRVRDWYVERRAEVAQACDHLEIASSRDSSDGNPAKNPRVVGLAGPGGAGKSTVASMVIAREDVRASFHKGVLWLPVGQGAKDRLPSLMLDLAGMVHKTAL 345
            A  V +PSGAPR+ +W+VER+  VA+ACD L I S +        + PRVVG++GPGG+GKST+ASMVIAR+DVR  F+KGVLWLPVG+GAK  LP LML LA MV++T L
Sbjct:  119 AGEVAVPSGAPRIHEWHVERKEAVAEACDSLGIGSGKSEFF----EMPRVVGMSGPGGSGKSTLASMVIARQDVREYFYKGVLWLPVGEGAKHCLPELMLHLARMVYETVL 225          
BLAST of mRNA_E-fasciculatus_F_contig1346.2591.1 vs. uniprot
Match: D7G5Y4_ECTSI (NB-ARC and TPR containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y4_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.110e-32
Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 1
Query:   19 RVKIPSGAPRVRDWYVERRAEVAQACDHLEIASSRDSSDGNPAKNPRVVGLAGPGGAGKSTVASMVIAREDVRASFHKGVLWLPVGQGAKDRLPSLMLDLAGMVHKTAL 345
            RV IPSGAP +RDWYVER     Q C HL I +S +     P + PR+VGLAGPGGAGKSTVASMV+ + DV+A F   VLWL VG+GAKDRLP+LM +LA  V +T L
Sbjct:    6 RVNIPSGAPSIRDWYVERVGVATQICHHLGIGTS-NGIPSFPGEQPRMVGLAGPGGAGKSTVASMVVTQVDVQAFFRGRVLWLSVGKGAKDRLPALMFELANRVRETVL 113          
BLAST of mRNA_E-fasciculatus_F_contig1346.2591.1 vs. uniprot
Match: A0A6H5KXU5_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU5_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.660e-32
Identity = 67/115 (58.26%), Postives = 81/115 (70.43%), Query Frame = 1
Query:    1 IADLASRVKIPSGAPRVRDWYVERRAEVAQACDHLEIASSRDSSDGNPAKNPRVVGLAGPGGAGKSTVASMVIAREDVRASFHKGVLWLPVGQGAKDRLPSLMLDLAGMVHKTAL 345
            + +   RV IPSGAP +RDWYVER    AQ C HL I +S +     P + PR+VGLAGPGGAGKSTVASMV+ + DV+A F   VLWL VG+GAKDRLP+LM +LA  V +T L
Sbjct:  166 VMEKPGRVNIPSGAPSIRDWYVERVKVEAQICHHLGIGTS-NGIPSFPEEQPRMVGLAGPGGAGKSTVASMVVTQVDVQAFFRGRVLWLSVGKGAKDRLPTLMFELAKTVRETVL 279          
BLAST of mRNA_E-fasciculatus_F_contig1346.2591.1 vs. uniprot
Match: D7FQM2_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM2_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.800e-31
Identity = 65/109 (59.63%), Postives = 77/109 (70.64%), Query Frame = 1
Query:   19 RVKIPSGAPRVRDWYVERRAEVAQACDHLEIASSRDSSDGNPAKNPRVVGLAGPGGAGKSTVASMVIAREDVRASFHKGVLWLPVGQGAKDRLPSLMLDLAGMVHKTAL 345
            RV IPSGAP +RDWYVE      Q C HL I +S +     P + PR+VGLAGPGGAGKSTVASMV+ + DV+A F   VLWL VG+GAKDRLP+LM +LA  V +T L
Sbjct:    6 RVNIPSGAPSIRDWYVEWVGVATQICHHLGIGTS-NGIPSFPGEQPRMVGLAGPGGAGKSTVASMVVTQVDVQAFFRGRVLWLSVGKGAKDRLPALMFELANRVRETVL 113          
BLAST of mRNA_E-fasciculatus_F_contig1346.2591.1 vs. uniprot
Match: A0A6H5JK89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK89_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.930e-30
Identity = 63/116 (54.31%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 IADLASRVKIPSGAPRVRDWYVERRAEVAQACDHLEIASSRDSSDGNPAKNPRVVGLAGPGGAGKSTVASMVIAREDVRASFHKGVLWLPV-GQGAKDRLPSLMLDLAGMVHKTAL 345
            +A LAS+VK+PS APR++ WY+ R   V   C  L + S     D    + PR+VGLAGP G GKSTV S+V+AREDVRA F  G++WLPV G+GA+ RLP LML LA MV++T L
Sbjct:  232 VAFLASKVKVPSRAPRIQAWYIPRSETVEDVCARLGVCSGSAVGDLGDHEEPRMVGLAGPTGCGKSTVTSLVVAREDVRAYFRDGIVWLPVRGKGAEHRLPDLMLLLANMVYETIL 347          
BLAST of mRNA_E-fasciculatus_F_contig1346.2591.1 vs. uniprot
Match: A0A6H5JL31_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL31_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.650e-27
Identity = 67/114 (58.77%), Postives = 82/114 (71.93%), Query Frame = 1
Query:    1 IADLASRVKIPSGAPRVRDWYVERRAEVAQACDHLEIASSRDSSDGNPAKNPRVVGLAGPGGAGKSTVASMVIAREDVRASFHKGVLWLPVGQGA-KDRLPSLMLDLAGMVHKT 339
            +ADLAS V+IP+ APR+RD +VER   ++Q C  L I    D +   PA+  +VVGLAG GG+GKSTVASMVI REDVRA F  GVLWL VGQ A +DRL  L+  LAGMV++T
Sbjct:   17 VADLASTVRIPTTAPRIRDRFVERGEVISQVCSLLGI---EDHTTAYPAEM-KVVGLAGAGGSGKSTVASMVIRREDVRAFFPGGVLWLSVGQRAGRDRLLELLTSLAGMVYET 126          
BLAST of mRNA_E-fasciculatus_F_contig1346.2591.1 vs. uniprot
Match: A0A6H5JI56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI56_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 5.280e-25
Identity = 56/110 (50.91%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   10 LASRVKIPSGAPRVRDWYVERRAEVAQACDHLEIASSRDSSDGNPAKNPRVVGLAGPGGAGKSTVASMVIAREDVRASF-HKGVLWLPVGQGAKDRLPSLMLDLAGMVHK 336
            L S+ K P+ AP ++DW+++R   VA  CD L +    D      +  P VVG+AGP GAGKST+ASM+IAR DVR  F  K ++WLPVGQGA+DRL  +M  LA MVH+
Sbjct:  298 LYSKAKGPAEAPLLQDWFIQREPVVAAICDRLGV---NDRGGSRASGEPPVVGVAGPSGAGKSTIASMIIARNDVRGHFSEKRIVWLPVGQGARDRLLDVMYRLAVMVHE 404          
BLAST of mRNA_E-fasciculatus_F_contig1346.2591.1 vs. uniprot
Match: D8LT49_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT49_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 2.490e-24
Identity = 55/107 (51.40%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   25 KIPSGAPRVRDWYVERRAEVAQACDHLEIASSRDSSDGNPAKNPRVVGLAGPGGAGKSTVASMVIAREDVRASF-HKGVLWLPVGQGAKDRLPSLMLDLAGMVHKTA 342
            K P+ AP ++DW+++R   VA  CD L +    D      +  P VVG+AGP GAGKST+ASM++AR DVR  F  KGV+WL VGQGA+DRL  +M  LA MVH+ A
Sbjct:  259 KSPAEAPLLQDWFIQREPVVAAICDRLGV---NDRGRSRASGEPPVVGVAGPSGAGKSTIASMIVARHDVRGHFSQKGVVWLSVGQGARDRLLDVMYRLAVMVHELA 362          
BLAST of mRNA_E-fasciculatus_F_contig1346.2591.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 5.410e-18
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   28 IPSGAPRVRDWYVERRAEVAQACDHLEIASSRDSSDGNPAKNPRVVGLAGPGGAGKSTVASMVIAREDVRASFHKGVLWLPVGQGAKDRLPSLMLDLAGMVHK 336
            +P GAP  + W+VERR  +A   D L           N +    VV LAG  G+GK+TVA+ ++   +VR +F  G++WLPV +GAK RLPSLML LA MVH+
Sbjct:  180 VPMGAPVRKSWHVERRHAMATVLDAL-----------NGSDRACVVALAGYSGSGKTTVAAEIVRSTEVREAFSDGIVWLPVNEGAKKRLPSLMLQLARMVHE 271          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1346.2591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7G247_ECTSI5.720e-6186.44NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KZP3_9PHAE3.460e-3460.36NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
D7G5Y4_ECTSI2.110e-3260.55NB-ARC and TPR containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KXU5_9PHAE2.660e-3258.26NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FQM2_ECTSI1.800e-3159.63Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
A0A6H5JK89_9PHAE2.930e-3054.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL31_9PHAE2.650e-2758.77NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JI56_9PHAE5.280e-2550.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT49_ECTSI2.490e-2451.40NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
D7FZW8_ECTSI5.410e-1845.63NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1346contigE-fasciculatus_F_contig1346:5939..6283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue4.3e-29
Seed eggNOG ortholog2880.D7FZP7
KEGG koko:K10407
KEGG Pathwayko05132,map05132
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNB-ARC
Ec32 orthologEc-09_003860.1
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927845.8615851-CDS-E-fasciculatus_F_contig1346:5938..62831622927845.8615851-CDS-E-fasciculatus_F_contig1346:5938..6283Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1346 5939..6283 +
1695995720.373503-CDS-E-fasciculatus_F_contig1346:5938..62831695995720.373503-CDS-E-fasciculatus_F_contig1346:5938..6283Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1346 5939..6283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1346.2591.1prot_E-fasciculatus_F_contig1346.2591.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1346 5939..6283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1346.2591.1

>prot_E-fasciculatus_F_contig1346.2591.1 ID=prot_E-fasciculatus_F_contig1346.2591.1|Name=mRNA_E-fasciculatus_F_contig1346.2591.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=115bp
IADLASRVKIPSGAPRVRDWYVERRAEVAQACDHLEIASSRDSSDGNPAK
NPRVVGLAGPGGAGKSTVASMVIAREDVRASFHKGVLWLPVGQGAKDRLP
SLMLDLAGMVHKTAL
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mRNA from alignment at E-fasciculatus_F_contig1346:5939..6283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1346.2591.1 ID=mRNA_E-fasciculatus_F_contig1346.2591.1|Name=mRNA_E-fasciculatus_F_contig1346.2591.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=345bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1346:5939..6283+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATTGCAGACTTGGCGAGCAGGGTCAAGATCCCCTCGGGAGCTCCTCGTGT TCGAGACTGGTATGTCGAGCGCAGGGCGGAGGTTGCTCAGGCTTGCGATC ACCTCGAGATCGCGAGCAGCCGTGACTCCTCCGACGGCAATCCCGCCAAA AACCCGCGGGTGGTCGGACTTGCGGGACCAGGCGGCGCGGGAAAGTCCAC GGTCGCCTCGATGGTGATCGCCCGCGAAGACGTGAGAGCATCATTCCACA AAGGGGTGCTATGGTTGCCGGTGGGACAGGGAGCAAAGGACCGTCTTCCT TCCCTCATGCTCGATCTCGCCGGAATGGTGCACAAGACCGCCCTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1346:5939..6283+

>mRNA_E-fasciculatus_F_contig1346.2591.1 ID=mRNA_E-fasciculatus_F_contig1346.2591.1|Name=mRNA_E-fasciculatus_F_contig1346.2591.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=690bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1346:5939..6283+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATTGCAGACTTGGCGAGCAGGGTCAAGATCCCCTCGGGAGCTCCTCGTGT
TCGAGACTGGTATGTCGAGCGCAGGGCGGAGGTTGCTCAGGCTTGCGATC
ACCTCGAGATCGCGAGCAGCCGTGACTCCTCCGACGGCAATCCCGCCAAA
AACCCGCGGGTGGTCGGACTTGCGGGACCAGGCGGCGCGGGAAAGTCCAC
GGTCGCCTCGATGGTGATCGCCCGCGAAGACGTGAGAGCATCATTCCACA
AAGGGGTGCTATGGTTGCCGGTGGGACAGGGAGCAAAGGACCGTCTTCCT
TCCCTCATGCTCGATCTCGCCGGAATGGTGCACAAGACCGCCCTTATTGC
AGACTTGGCGAGCAGGGTCAAGATCCCCTCGGGAGCTCCTCGTGTTCGAG
ACTGGTATGTCGAGCGCAGGGCGGAGGTTGCTCAGGCTTGCGATCACCTC
GAGATCGCGAGCAGCCGTGACTCCTCCGACGGCAATCCCGCCAAAAACCC
GCGGGTGGTCGGACTTGCGGGACCAGGCGGCGCGGGAAAGTCCACGGTCG
CCTCGATGGTGATCGCCCGCGAAGACGTGAGAGCATCATTCCACAAAGGG
GTGCTATGGTTGCCGGTGGGACAGGGAGCAAAGGACCGTCTTCCTTCCCT
CATGCTCGATCTCGCCGGAATGGTGCACAAGACCGCCCTT
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