mRNA_E-fasciculatus_F_contig13436.2578.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13436.2578.1
Unique NamemRNA_E-fasciculatus_F_contig13436.2578.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13436.2578.1 vs. uniprot
Match: D7FKS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKS0_ECTSI)

HSP 1 Score: 405 bits (1042), Expect = 1.120e-138
Identity = 206/223 (92.38%), Postives = 214/223 (95.96%), Query Frame = 2 
Query:    2 QVVSASISQYDIENGRSSCTCICLEASLTVLERLGDGTAWAGSPDDVASCVNTGVAMYEAVAATGTLAVEHTSVAEILAAVARYRDALQPATEKVSHQGLLGSDTSIARVLGEIQGERRDQSRPVAVAITKPPETVVCFLPAESQGGGGVATTGAPSTRQWLLFDSHPRPQLGLVGASVRSFGAQEALVEALNDIFPAVDLGTDSVMSSMYNMFDCVPLSLKR 670
            QVVSASISQYD++NGRSSCTCICLEASLTVLERLGDGTAWAGSPDDVA+CVNTGVAMYEAVAATGTLAVEHTSVAEILA VARY DALQPAT+KV+HQGLLGSDTSIARVLGEI+GERRDQSRPVAV ITKPPETVVCFLPAESQ  GG ATTGAPSTRQWLLFDSHPRPQ GLVGASVR F A+EALVEALNDIFPAVDLGTDSVMSSMYNMFDCVPLSLK+
Sbjct:   14 QVVSASISQYDVQNGRSSCTCICLEASLTVLERLGDGTAWAGSPDDVANCVNTGVAMYEAVAATGTLAVEHTSVAEILATVARYHDALQPATDKVTHQGLLGSDTSIARVLGEIRGERRDQSRPVAVVITKPPETVVCFLPAESQAEGGAATTGAPSTRQWLLFDSHPRPQHGLVGASVRCFAAEEALVEALNDIFPAVDLGTDSVMSSMYNMFDCVPLSLKK 236
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BLAST of mRNA_E-fasciculatus_F_contig13436.2578.1 vs. uniprot
Match: B7G7Q3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7Q3_PHATC)

HSP 1 Score: 73.6 bits (179), Expect = 5.420e-11
Identity = 74/227 (32.60%), Postives = 104/227 (45.81%), Query Frame = 2 
Query:   20 ISQYDIENGRSSCTCICLEASLTVLERLGDGTAWAGSPDDVASCVNTGVAMYEAVAATGTLAVEHTSVAEILAAVARYRDALQ-PATEKVS--HQGLLGSDTS----IARVLGEIQGERRDQSRPVAVAITKPPETVVCFLPAESQGGGGVATTGAPSTRQWLLFDSHPRPQL-GLVGASVRSFGAQEALVEALNDIFPAVDLGTD--SVMSSMYNMFDCVPLSLKR 670
            +SQY +E G+SSCTCI +  +L  L      +    SP+ +   +  G   Y  +A   T  VEH S  E L       D+ +    E +    QG++  D       A  L E + ER        V ITK PE+VV  LP  S+              +++L DSHPR  L G  G+  R   +  ALV++L  IFP  DLG+D   +M++MYN FD      K+
Sbjct:   70 LSQYSLEAGQSSCTCIAMTNALHFLRSSNHISDL--SPEFLQCALLAGNQTYLKIARNRT--VEHMSAEEAL-------DSGEFQCLELIGSVRQGIISRDDQHPLGFAVQLQECKSERFW----TCVLITKTPESVVICLPPSSE-------------TEYVLIDSHPRSHLFGTEGSYARIHFSLSALVDSLKQIFPMTDLGSDVPELMAAMYNSFDLYAFQYKQ 268
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13436.2578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKS0_ECTSI1.120e-13892.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B7G7Q3_PHATC5.420e-1132.60Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13436contigE-fasciculatus_F_contig13436:812..2807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score301.6
Seed ortholog evalue2.3e-79
Seed eggNOG ortholog2880.D7FKS0
EggNOG OGs2E3UP@1,2SAUQ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_001890.1
Exons4
Model size1323
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13436.2578.1prot_E-fasciculatus_F_contig13436.2578.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13436 1172..2157 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927844.4416246-UTR-E-fasciculatus_F_contig13436:811..9561622927844.4416246-UTR-E-fasciculatus_F_contig13436:811..956Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13436 812..956 +
1695995719.6650283-UTR-E-fasciculatus_F_contig13436:811..9561695995719.6650283-UTR-E-fasciculatus_F_contig13436:811..956Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13436 812..956 +
1622927844.462739-UTR-E-fasciculatus_F_contig13436:1147..11711622927844.462739-UTR-E-fasciculatus_F_contig13436:1147..1171Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13436 1148..1171 +
1695995719.675302-UTR-E-fasciculatus_F_contig13436:1147..11711695995719.675302-UTR-E-fasciculatus_F_contig13436:1147..1171Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13436 1148..1171 +
1622927844.5149913-UTR-E-fasciculatus_F_contig13436:2157..28071622927844.5149913-UTR-E-fasciculatus_F_contig13436:2157..2807Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13436 2158..2807 +
1695995719.7165163-UTR-E-fasciculatus_F_contig13436:2157..28071695995719.7165163-UTR-E-fasciculatus_F_contig13436:2157..2807Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13436 2158..2807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927844.4729776-CDS-E-fasciculatus_F_contig13436:1171..12511622927844.4729776-CDS-E-fasciculatus_F_contig13436:1171..1251Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13436 1172..1251 +
1695995719.685928-CDS-E-fasciculatus_F_contig13436:1171..12511695995719.685928-CDS-E-fasciculatus_F_contig13436:1171..1251Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13436 1172..1251 +
1622927844.4863462-CDS-E-fasciculatus_F_contig13436:1439..15961622927844.4863462-CDS-E-fasciculatus_F_contig13436:1439..1596Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13436 1440..1596 +
1695995719.697612-CDS-E-fasciculatus_F_contig13436:1439..15961695995719.697612-CDS-E-fasciculatus_F_contig13436:1439..1596Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13436 1440..1596 +
1622927844.4995322-CDS-E-fasciculatus_F_contig13436:1890..21571622927844.4995322-CDS-E-fasciculatus_F_contig13436:1890..2157Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13436 1891..2157 +
1695995719.7075465-CDS-E-fasciculatus_F_contig13436:1890..21571695995719.7075465-CDS-E-fasciculatus_F_contig13436:1890..2157Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13436 1891..2157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13436.2578.1

>prot_E-fasciculatus_F_contig13436.2578.1 ID=prot_E-fasciculatus_F_contig13436.2578.1|Name=mRNA_E-fasciculatus_F_contig13436.2578.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=168bp
MYEAVAATGTLAVEHTSVAEILAAVARYRDALQPATEKVSHQGLLGSDTS
IARVLGEIQGERRDQSRPVAVAITKPPETVVCFLPAESQGGGGVATTGAP
STRQWLLFDSHPRPQLGLVGASVRSFGAQEALVEALNDIFPAVDLGTDSV
MSSMYNMFDCVPLSLKR*
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mRNA from alignment at E-fasciculatus_F_contig13436:812..2807+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13436.2578.1 ID=mRNA_E-fasciculatus_F_contig13436.2578.1|Name=mRNA_E-fasciculatus_F_contig13436.2578.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1996bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13436:812..2807+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAGGTCGTCTCTGCTTCCATCAGCCAGTACGACATCGAGAATGGGAGAT
CTTCGTGCACGTGCATCTGCTTGGAAGCTTCGTTGACGGTTTTGGAGCGT
TTGGGTGATGGCACCGCGTGGGCTGGCTCGCCAGACGATGTAGCGGTGAG
TCTCCCGTGTTCTCAAATGTTCACCGAAGCTGCATCTTGTTGTGGTGGGC
GATCGAGTGGTTCGGTTGTCGGGTTATTTCTGGTATAGTTTTTTGTTTTT
TGTACCCTGGTTTGGTAGGATTGCGTCAGCATCGGCGCTACACATGGCCG
ATCATCGCTCCGTATCATCTGTTTGGCCTCGCTCAGAGCTGCGTCAACAC
TGGGGTGGCCATGTACGAAGCAGTGGCAGCCACTGGCACGCTTGCGGTGG
AGCACACTTCTGTCGCTGAAATTCTCGCAGCTGTTGCCAGGTGACATGAT
GGTCTGATTCTTGGAATTGTTGAAGGTGTTCAACAAAATCGTGAGCAGGT
CGAAGGTTCGCGAAATGATACCTGCTGTGTGGCTACGACTGGCACTGCGT
TGGTGCGTGCTCGAGGCTGATACATGATCTCTGTTGACTTGCTGACGACA
GCTAGTCGCTGATTTCTGTGTGATGCAGGTATCGCGATGCGCTGCAGCCC
GCGACCGAAAAAGTGTCGCATCAGGGCTTGCTTGGCTCGGACACGTCAAT
AGCCAGAGTTCTTGGAGAGATTCAGGGTGAGCGGCGAGATCAAAGCAGGC
CTGTGGCGGTCGCGATCACGAAGCCGCCCGAAACGGTGAGGCGCCCTAGG
GTAATGCCCTACCGCTTGTTTTGTTTGTAGCCATGCGTCAGTGTCCGCGC
AGCAGGTTCCCCGTTTTTGCTTGTACTGTAGCGGGGTTAGACTCGAAGGC
TTCTTCTGCCGCGGATTTAGGTTAAGATTTGCGGTGCATCGATTTGTTTT
GCCGGAATGTTCACATATTTGAGTGTTCTGCATCGCGCCAAGAACGTTTC
TCTAATAGTGAGGTTCTGTGGTGGAAAAGTCCTATGAATATGTGTCCAAT
AAACCCACTGTTTTTCTCGACTGCCTCAGGTGGTCTGCTTTCTGCCTGCG
GAGAGCCAAGGAGGAGGGGGTGTTGCGACCACAGGCGCGCCTTCGACCCG
ACAATGGCTGCTGTTTGATTCGCATCCCCGCCCGCAGCTTGGGTTGGTTG
GGGCAAGCGTTCGTTCGTTCGGGGCGCAGGAAGCTCTTGTCGAAGCGTTG
AACGATATATTTCCTGCGGTTGACCTCGGCACAGACAGCGTCATGTCGAG
CATGTACAACATGTTCGACTGTGTCCCCTTGTCCTTGAAGAGATGAAGGC
GAGGCACTGTGTAGGTATTGGGTTGTAGGGTTGTTTCTATCAACACTCAC
GTGTGGCGTCTACAATAATGATGCTGGTCTGACGGTGGGCTGGTCTGACG
GTGGGCTGTGCTGCGCACCGCCACGAGAAGTGTTCCTTCCCTCGCGTGTA
TATATGCGTAAATTTTGGATGGTCTAGTAATCTGTAGGGTGGAGAGTCGA
GTACCCGCGCGGGGTCTCGTTCATGGCGATTATGTAGTCTAGTCAACTTG
CCGTGAGCGACGTTAAAGGTTTGATCTCCGTGGACGTTTGGGCTTTCGGG
GGAGTTTGCTCTTTTTTGGTTCACTACAATGTGTAGTGGAATTCGTAAAA
CGGATGGAAGAAGAATAGAGGTAACTCTGTCATGCCCTTTAACCCGCAAG
AAGATTCACAAGTTCCTCCGGCGGTGGATTTGTGCTGGATGGTGGTCATT
GCAACTTTACCACGTAGGCACGTAGGCACGTATGAGAACGAAATTACGCT
ATGGTCAGAGCGCGCGACAAGCATTTGTGTACCAAAAGGTGTGGAGACGT
AGACCCTTGCATCAACGATTTTTGGGAGAAGGCCGACACGACACAACCAC
CAGCCCAACCAGACAGACACTTGACCAGCCAATTGCACACAAGGTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13436:812..2807+

>mRNA_E-fasciculatus_F_contig13436.2578.1 ID=mRNA_E-fasciculatus_F_contig13436.2578.1|Name=mRNA_E-fasciculatus_F_contig13436.2578.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1008bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13436:812..2807+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACGAAGCAGTGGCAGCCACTGGCACGCTTGCGGTGGAGCACACTTC
TGTCGCTGAAATTCTCGCAGCTGTTGCCAGATGTACGAAGCAGTGGCAGC
CACTGGCACGCTTGCGGTGGAGCACACTTCTGTCGCTGAAATTCTCGCAG
CTGTTGCCAGGTATCGCGATGCGCTGCAGCCCGCGACCGAAAAAGTGTCG
CATCAGGGCTTGCTTGGCTCGGACACGTCAATAGCCAGAGTTCTTGGAGA
GATTCAGGGTGAGCGGCGAGATCAAAGCAGGCCTGTGGCGGTCGCGATCA
CGAAGCCGCCCGAAACGGTATCGCGATGCGCTGCAGCCCGCGACCGAAAA
AGTGTCGCATCAGGGCTTGCTTGGCTCGGACACGTCAATAGCCAGAGTTC
TTGGAGAGATTCAGGGTGAGCGGCGAGATCAAAGCAGGCCTGTGGCGGTC
GCGATCACGAAGCCGCCCGAAACGGTGGTCTGCTTTCTGCCTGCGGAGAG
CCAAGGAGGAGGGGGTGTTGCGACCACAGGCGCGCCTTCGACCCGACAAT
GGCTGCTGTTTGATTCGCATCCCCGCCCGCAGCTTGGGTTGGTTGGGGCA
AGCGTTCGTTCGTTCGGGGCGCAGGAAGCTCTTGTCGAAGCGTTGAACGA
TATATTTCCTGCGGTTGACCTCGGCACAGACAGCGTCATGTCGAGCATGT
ACAACATGTTCGACTGTGTCCCCTTGTCCTTGAAGAGATGAGTGGTCTGC
TTTCTGCCTGCGGAGAGCCAAGGAGGAGGGGGTGTTGCGACCACAGGCGC
GCCTTCGACCCGACAATGGCTGCTGTTTGATTCGCATCCCCGCCCGCAGC
TTGGGTTGGTTGGGGCAAGCGTTCGTTCGTTCGGGGCGCAGGAAGCTCTT
GTCGAAGCGTTGAACGATATATTTCCTGCGGTTGACCTCGGCACAGACAG
CGTCATGTCGAGCATGTACAACATGTTCGACTGTGTCCCCTTGTCCTTGA
AGAGATGA
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