mRNA_E-fasciculatus_F_contig13433.2577.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13433.2577.1
Unique NamemRNA_E-fasciculatus_F_contig13433.2577.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13433.2577.1 vs. uniprot
Match: A0A6H5JSX2_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX2_9PHAE)

HSP 1 Score: 410 bits (1055), Expect = 5.890e-127
Identity = 377/482 (78.22%), Postives = 382/482 (79.25%), Query Frame = 1 
Query:    1 RYSLPGGSLDEATLLDALRPPVPRAVFDSAVGEVIEARRIRAAGGXXXXXXXXXXEVGGQPLQQFPASDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVATAEEKEALSLLKGYIDTAAQHAANKGRGSDGG----GSVAGERSSPVYLPESLSQAIYVPTQKITTLHPGVGAVAVAVATALESGPAAGGDGRREAGGDEGG--EDDIDLRLSSPALSATPALLQSVTGMHTNAVDARRAMALVEQADVDGTAASSGRHENXXXXXXXXXXXXXXXXXXXXXQQGRG----GNPSXXXWEXXXXXXXXXXXXXXXXLVRRAKALGVPPLPPDLGAVRAPNGAKYSHYLLDSGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQ-EQYSSQYEHGSRRPDWRPRQGVLVASLREHGGAVNRLALSQDQAFFVSASSDSTCKV 1413
            RYSLPGGSLDEATLLDALRPPVPR VFDSAVGEVIE RR+RA G XXXXXXXXXX               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          GVVATA+EKEALSLLKGYIDTAAQHAANKGR         GSVAGERSSPVYLPESLSQAIYVPTQKITTLHPGVGAVAVAVATAL SG A+ GD             EDDIDLRLSS ALSATPALLQSVTGMHTNAVDARRAMALVE ADVDG A SSGRH+N       XXXXXXXXXXXXXX         G PS   WE                L+RRAKALGVPPLPPDLGAVRAPNGAKYSHYLLDSG  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   EQYS QYEHGSRRPDWRPRQGVLVASLREHGGAVNRLALSQDQAFFVSASSDSTCKV
Sbjct:  723 RYSLPGGSLDEATLLDALRPPVPRPVFDSAVGEVIETRRVRATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSGAENGGEGGVVATADEKEALSLLKGYIDTAAQHAANKGRXXXXXXXXXGSVAGERSSPVYLPESLSQAIYVPTQKITTLHPGVGAVAVAVATALASGQASSGDXXXXXXXXXXXXXEDDIDLRLSSSALSATPALLQSVTGMHTNAVDARRAMALVEHADVDGAAGSSGRHDNGSSYAASXXXXXXXXXXXXXXXXXXXXXXXGKPSAPAWEVSRVGGVGGRPDDAVALLRRAKALGVPPLPPDLGAVRAPNGAKYSHYLLDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQYSLQYEHGSRRPDWRPRQGVLVASLREHGGAVNRLALSQDQAFFVSASSDSTCKV 1204
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13433.2577.1 vs. uniprot
Match: D8LRQ5_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ5_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 1.850e-118
Identity = 361/481 (75.05%), Postives = 366/481 (76.09%), Query Frame = 1 
Query:    1 RYSLPGGSLDEATLLDALRPPVPRAVFDSAVGEVIEARRIRAAGGXXXXXXXXXXEVGGQPLQQFPASDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVATAEEKEALSLLKGYIDTAAQHAANKGRGSDGG----GSVAGERSSPVYLPESLSQAIYVPTQKITTLHPGVGAVAVAVATALESGPAAGGDGRREAGGDEGGEDDIDLRLSSPALSATPALLQSVTGMHTNAVDARRAMALVEQADVDGTAASSGRHENXXXXXXXXXXXXXXXXXXXXX-----QQGRGGNPSXXXWEXXXXXXXXXXXXXXXXLVRRAKALGVPPLPPDLGAVRAPNGAKYSHYLLDSGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQE-QYSSQYEHGSRRPDWRPRQGVLVASLREHGGAVNRLALSQDQAFFVSASSDSTCKV 1413
            RYSLPGGSLDEA LLDALRPPVPR VFDSAVGEVIEARR+RAA                                                     XXXXXXXXXXXXXXXXXXXXXXXXXX     A +         YIDTAAQHAANKGRG        GSVAGERSSPVYLPESLSQAIYVPTQKITTLHPGVGAVAVAVA AL SG A  GDGRR+AGGDEGGEDDIDLRLSS ALSATPALLQSVTGMHTNAVDARRAMALVEQADVDG A SSGRH+NXXXXXXXXXXXXXXXXXXXXX     +QG G  PS         XXXXXXXXXXXX      ALGVPPLPPDLGAVRAPNGAKYSHYLLDSG  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    QYSSQYEHGSRRPDWRPRQGVLVASLREHGGAVNRLALSQDQAFFVSASSDSTCKV
Sbjct:  516 RYSLPGGSLDEAALLDALRPPVPRPVFDSAVGEVIEARRVRAA-----------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDYR-------YIDTAAQHAANKGRGXXXXXXXXGSVAGERSSPVYLPESLSQAIYVPTQKITTLHPGVGAVAVAVAKALASGQATSGDGRRDAGGDEGGEDDIDLRLSSAALSATPALLQSVTGMHTNAVDARRAMALVEQADVDGAAGSSGRHDNXXXXXXXXXXXXXXXXXXXXXXXASSRQGVGVKPSAPAGSVSRAXXXXXXXXXXXXXXXXXXALGVPPLPPDLGAVRAPNGAKYSHYLLDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYSSQYEHGSRRPDWRPRQGVLVASLREHGGAVNRLALSQDQAFFVSASSDSTCKV 936
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13433.2577.1 vs. uniprot
Match: A0A251V6A1_HELAN (Non-specific serine/threonine protein kinase n=3 Tax=Heliantheae alliance TaxID=911341 RepID=A0A251V6A1_HELAN)

HSP 1 Score: 58.5 bits (140), Expect = 2.410e-5
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 1 
Query: 1282 PDWRPRQGVLVASLREHGGAVNRLALSQDQAFFVSASSDSTCKV 1413
            P WRPR GVLVA L+EH  AVN +ALS DQ FFV+AS DST KV
Sbjct:  983 PGWRPR-GVLVAHLQEHRSAVNDIALSTDQTFFVTASDDSTVKV 1025
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13433.2577.1 vs. uniprot
Match: A0A6A4L0J9_9ERIC (Non-specific serine/threonine protein kinase (Fragment) n=2 Tax=Rhododendron TaxID=4346 RepID=A0A6A4L0J9_9ERIC)

HSP 1 Score: 58.5 bits (140), Expect = 2.430e-5
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 
Query: 1261 YEHGSRRPD--WRPRQGVLVASLREHGGAVNRLALSQDQAFFVSASSDSTCKV 1413
            +  G+  PD  WRPR GVLVA L+EH  AVN +A+S DQ+FFVSAS DST KV
Sbjct: 1069 FTRGALVPDSGWRPR-GVLVAHLQEHRSAVNEIAISTDQSFFVSASDDSTVKV 1120
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13433.2577.1 vs. uniprot
Match: A0A7S3HPN9_9STRA (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPN9_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.500e-5
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1 
Query: 1270 GSRRPDWRPRQGVLVASLREHGGAVNRLALSQDQAFFVSASSDSTCKV 1413
            G  R  WRP++GVL+ +L+EH G VNRL +S DQ+FF S S+D T K+
Sbjct:  178 GPGRTAWRPKEGVLLTTLKEHSGPVNRLIVSPDQSFFASGSADKTVKI 225
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13433.2577.1 vs. uniprot
Match: A0A8K1C2E6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2E6_PYTOL)

HSP 1 Score: 57.4 bits (137), Expect = 5.760e-5
Identity = 78/152 (51.32%), Postives = 91/152 (59.87%), Query Frame = 1 
Query:  997 LVRRAKALGVPPLPPDLGAVRAPNGAKYS--------HYLLDSGG---GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQEQYSSQYEHGSRRP--DWRPRQGVLVASLREHGGAVNRLALSQDQAFFVSASSDSTCKV 1413
            L+ R  ALGVPPLPPDLG++R  +G+ YS        H ++  GG                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX      S   H S     +WRPRQ VLVA L EH GAV+R+  +QD +F  SAS D T K+
Sbjct: 1281 LLARLTALGVPPLPPDLGSLRLLDGSVYSIYAHPASPHSMVQHGGMGNSTSSGVGDRGGIASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGIYHSSISSYRNWRPRQNVLVAELAEHSGAVHRIGAAQDFSFLASASKDGTVKL 1432
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13433.2577.1 vs. uniprot
Match: UPI001FB1A1D8 (serine/threonine-protein kinase VPS15 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB1A1D8)

HSP 1 Score: 57.0 bits (136), Expect = 7.360e-5
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 1 
Query: 1288 WRPRQGVLVASLREHGGAVNRLALSQDQAFFVSASSDSTCKV 1413
            WRPR GVLVA L+EH  AVN +A+S DQ+FFVSAS DST KV
Sbjct: 1097 WRPR-GVLVAHLQEHRSAVNDIAVSSDQSFFVSASDDSTVKV 1137
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13433.2577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JSX2_9PHAE5.890e-12778.22Non-specific serine/threonine protein kinase n=1 T... [more]
D8LRQ5_ECTSI1.850e-11875.05Non-specific serine/threonine protein kinase n=1 T... [more]
A0A251V6A1_HELAN2.410e-570.45Non-specific serine/threonine protein kinase n=3 T... [more]
A0A6A4L0J9_9ERIC2.430e-562.26Non-specific serine/threonine protein kinase (Frag... [more]
A0A7S3HPN9_9STRA2.500e-554.17Non-specific serine/threonine protein kinase (Frag... [more]
A0A8K1C2E6_PYTOL5.760e-551.32Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI001FB1A1D87.360e-571.43serine/threonine-protein kinase VPS15 n=1 Tax=Impa... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13433contigE-fasciculatus_F_contig13433:106..3643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score396.4
Seed ortholog evalue1.9e-107
Seed eggNOG ortholog2880.D8LRQ5
KEGG koko:K08333
KEGG Pathwayko04136,ko04138,ko04140,ko04371,map04136,map04138,map04140,map04371
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005768,GO:0005770,GO:0005942,GO:0006464,GO:0006468,GO:0006605,GO:0006623,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016236,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019898,GO:0030242,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034271,GO:0034272,GO:0034613,GO:0035032,GO:0036211,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0061695,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071561,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098796,GO:0140096,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.autophagy of peroxisome
EggNOG OGsKOG1240@1,KOG1240@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size1413
Cds size1413
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13433.2577.1prot_E-fasciculatus_F_contig13433.2577.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13433 106..3643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927844.365118-CDS-E-fasciculatus_F_contig13433:105..2731622927844.365118-CDS-E-fasciculatus_F_contig13433:105..273Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13433 106..273 +
1695995719.6059532-CDS-E-fasciculatus_F_contig13433:105..2731695995719.6059532-CDS-E-fasciculatus_F_contig13433:105..273Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13433 106..273 +
1622927844.3791184-CDS-E-fasciculatus_F_contig13433:703..9511622927844.3791184-CDS-E-fasciculatus_F_contig13433:703..951Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13433 704..951 +
1695995719.6216059-CDS-E-fasciculatus_F_contig13433:703..9511695995719.6216059-CDS-E-fasciculatus_F_contig13433:703..951Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13433 704..951 +
1622927844.3893971-CDS-E-fasciculatus_F_contig13433:1771..21001622927844.3893971-CDS-E-fasciculatus_F_contig13433:1771..2100Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13433 1772..2100 +
1695995719.6320262-CDS-E-fasciculatus_F_contig13433:1771..21001695995719.6320262-CDS-E-fasciculatus_F_contig13433:1771..2100Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13433 1772..2100 +
1622927844.3994393-CDS-E-fasciculatus_F_contig13433:2472..27851622927844.3994393-CDS-E-fasciculatus_F_contig13433:2472..2785Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13433 2473..2785 +
1695995719.6421137-CDS-E-fasciculatus_F_contig13433:2472..27851695995719.6421137-CDS-E-fasciculatus_F_contig13433:2472..2785Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13433 2473..2785 +
1622927844.409987-CDS-E-fasciculatus_F_contig13433:3288..36431622927844.409987-CDS-E-fasciculatus_F_contig13433:3288..3643Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13433 3289..3643 +
1695995719.6530864-CDS-E-fasciculatus_F_contig13433:3288..36431695995719.6530864-CDS-E-fasciculatus_F_contig13433:3288..3643Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13433 3289..3643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13433.2577.1

>prot_E-fasciculatus_F_contig13433.2577.1 ID=prot_E-fasciculatus_F_contig13433.2577.1|Name=mRNA_E-fasciculatus_F_contig13433.2577.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=471bp
RYSLPGGSLDEATLLDALRPPVPRAVFDSAVGEVIEARRIRAAGGRGGGG
GGAGAEVGGQPLQQFPASDNAAGGGDYRRQAADSRDGGIGGRDHARRSQQ
QQQQQQQQQRRNVSGAENGGEGGVVATAEEKEALSLLKGYIDTAAQHAAN
KGRGSDGGGSVAGERSSPVYLPESLSQAIYVPTQKITTLHPGVGAVAVAV
ATALESGPAAGGDGRREAGGDEGGEDDIDLRLSSPALSATPALLQSVTGM
HTNAVDARRAMALVEQADVDGTAASSGRHENSSSYAASATLASSAAAAIA
SSQQGRGGNPSAAAWEASRAGGVGGRPDDAAALVRRAKALGVPPLPPDLG
AVRAPNGAKYSHYLLDSGGGGGGGGGGAGGAGGGAGSSNSASSGAGGANS
RSAYPATAAAAAQQEQYSSQYEHGSRRPDWRPRQGVLVASLREHGGAVNR
LALSQDQAFFVSASSDSTCKV
back to top

mRNA from alignment at E-fasciculatus_F_contig13433:106..3643+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13433.2577.1 ID=mRNA_E-fasciculatus_F_contig13433.2577.1|Name=mRNA_E-fasciculatus_F_contig13433.2577.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3538bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13433:106..3643+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTATTCCTTGCCGGGGGGCTCGTTGGACGAGGCTACCCTGCTCGATGC
CCTCAGACCCCCCGTGCCCCGCGCCGTCTTCGATTCCGCGGTGGGCGAAG
TGATCGAGGCTAGGAGGATAAGGGCTGCCGGAGGCAGAGGCGGCGGCGGC
GGCGGCGCAGGGGCAGAGGTGAGAAGCGTTTGGGTGACCACATTAACCGA
AAAATCTAACGGCGATACGTGTAGACCAAACAATACAGCCGTATGCAAGT
GTGGCCGAGCCGCGAGTCTCAGCCAAACGGGCGCTCCACCAGGCAAGCGT
TGACAATACGGTCGTATCCCGGTTTAGCGGGCGAGTGTCAAAAAAAATGT
TATAACCGCTATTGAGGGCATCGCCGCCAGAACCGGATTGGCAGTTATGT
ATAATAGTAGTTTGACTAACGAGATGCAGCTGTTCCACGAGATTTTGGAA
CCGCTGTTCAGGGCATCGATCCATCCCGCTAAACAGGGAACGAACCGCTA
AACTGGGACCACGACTGCACATAGCAATCGCGGCAACAGAGAGCAGACCC
ACAAACCGCCTGGGAAACTCCACCCCGCCACCCCCCCCGCCCTCTCAGGT
CGGCGGGCAGCCGCTCCAGCAGTTCCCGGCGAGTGACAATGCCGCCGGCG
GCGGCGACTACCGGCGACAGGCTGCCGACAGCCGGGACGGGGGCATCGGC
GGCCGCGATCATGCCCGAAGAAGTCAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGAGACGAAACGTGTCGGGAGCGGAGAACGGGGGGGAGGGGGGGG
TCGTCGCGACAGCGGAAGAGAAGGAGGCGTTGTCTCTCCTGAAGGGGTGA
GGGAGGGGGGGGGGGGGGGGTACTCGTAGCCGTGCATGCCGTAGTTGTTG
TTCATTGACCTCGCATCCCCGGACGGAGCGATATGCCGGTTTTCCGCCGA
ACCAGGCTGTCACACCACCAAGCGCGAAGCGCCGAGAGGTAGTCGGCGAG
TCGCATGGAGGGTGTGGTGCATCTTGCATCTTGCTAAGGGTGTTCGTCTT
CACTTCGTTGCATACGGATGACAGCTGCGAAATGGACCGTTCAGTATTTA
GTGCGAGTGCCGAGTCACTCGGCCGTGCCCGCGTACCTTGCAAAGGAGTG
TGTGCGTCGTGTCTCGCGTCGTTTTTTGCATGGCTTGTGTGGTGCGGATG
TGCCATTGGTCGTGGCGTTGTCTTGTGGTTGCTTCGTGAGAGCGAGGCAC
CGAGTTACCCAGCCATTTGCGTCTGCGTATCCTTCAACTGGGTCGAGAAT
TTGCTACAATTGTTGTCGATCGGACGCCTTTTTTTGTAGAGGCGTAGCGG
CTGTTGTACGCAACGGCGAAGAGGGGAAACAGGGGTGTCTAGCAACCGAC
ATCAAACCGTAAGACAATCAGCGCTGACAGCTGAAATGGTTAGATTCGGT
CGCTAAAGCACATTGCGGTCTGTGGGAAAAAAGCGGTAGGCAGTGAAGTG
TACCCGAGCTTTGTGTCCTTTTTTTATTTTGTGTTTTCCCCGCCCTCCCA
CCTCCACCTAGCCCAAGTCCCCGGCCTCACCACCCGGCCCGGTCCGTATA
TCCTCCCCTTCGTGCTCGCATTCCACACCAACAAACCTTGTGACAAAACG
CAAACCGTGCTCTCAGGTACATCGACACCGCTGCTCAGCACGCCGCTAAC
AAGGGCCGCGGCAGCGACGGCGGCGGCAGCGTTGCGGGGGAGCGATCGTC
TCCCGTCTACCTCCCGGAGTCTCTGTCCCAGGCCATCTACGTGCCGACGC
AGAAGATTACCACTCTGCACCCCGGGGTGGGTGCGGTGGCCGTCGCTGTG
GCGACGGCGCTCGAAAGCGGCCCCGCGGCTGGGGGGGACGGCCGTCGGGA
GGCGGGGGGGGATGAGGGCGGGGAGGACGACATCGACCTGCGGCTGTCCT
CTCCCGCGCTGTCGGCGACCCCTGCGCTTCTCCAGAGCGTTACAGGTAAG
GGTAAGGGTTGTTTTTTTTCTCGAGGACGAAGGTTCGGTCGGTCGACGTC
TGGAGCCATGCGCTTCACCTGTCTGCCGGTCCCTCACATACCCCCCCCTC
CGTAGCCCTTTCGAATAGGTCTTGAATGACGTTTTTTAAGTTAGATTTTG
GATTTCGTTTTCTTTATAGGTCTCGAATACCGATTAAAATTCGTTCAAGT
GTCATTTATTAAGTCAGGTCTTGACTATCTTTTTTCGATTTATGGTCTTG
AATACCGTTTAATTAAGTCAGTTAGGCCTTGAATACCGTTTATCAAGTCG
CCGTTATTACCCTACGGAAACGCTAAGTTTGTGCCTTCCTTCCTCGCTGC
CGCCCGACCCCCACCAGGGATGCACACGAACGCGGTGGACGCTCGGAGGG
CAATGGCCCTAGTGGAACAGGCAGATGTGGACGGAACAGCGGCAAGTAGT
GGGCGGCACGAGAACAGCAGCAGCTATGCGGCTAGCGCAACGCTGGCGTC
CTCTGCCGCCGCCGCCATTGCGTCGAGCCAGCAAGGAAGGGGTGGGAATC
CGTCCGCTGCGGCGTGGGAGGCGTCTAGGGCGGGTGGGGTCGGTGGCAGG
CCGGACGATGCGGCTGCCCTAGTGAGAAGGGCCAAGGCGCTCGGGGTGCC
CCCGCTACCCCCAGACCTTGGGGCCGTCAGGTGAGGCGCTACTAGGGGCA
CGCGGTGCAAGGACACGCGATGCGAGGGCAAGCAGAGGCGGAATATATAA
TTGTGGCTGTATTTTTGTGTCCGGGTGTGCTAGATGCTTGGGGGAGTGAT
CGGTGCCCGAGAGTAAACACGCCGCAGAAGCTTTCGGTGAAGTCTGTCGG
AAGAATGGGCGGTTGTTCCCTTGGTTAGGTGCACCGCCGATGATTTTTAG
CGATTTCTACGACGTGCTGCTGTTGCCCCTGGCTTGGAAGGTAACGAAGG
GGCGGGGCTCCGACGAATGGGGGACAGAGAGTCCTGCTCCTTGTGCGGCG
CTCTCTGCTACCGAGTTAGATACAAGTTTTGTTTTCTTCTTCGACATAGG
CCGCTCAGCTATCTCCTCCACCGGGCACGAGCTCTGCTTTCCTTCGATAT
ATACGTGAGTGCCTTGATTTCTCCCTCTGTTTCGGTTGCCTCATGTATGT
GCTCACACACCTCTGTCGCGGTGATGGCAACAGGGCTCCGAACGGCGCCA
AATACTCCCACTACCTCCTCGATTCCGGCGGTGGCGGTGGTGGCGGCGGT
GGCGGAGCAGGAGGCGCGGGCGGCGGCGCGGGATCCTCCAACTCGGCGTC
ATCGGGGGCCGGGGGCGCGAACTCCAGATCCGCCTACCCGGCGACGGCGG
CGGCGGCGGCGCAGCAGGAGCAGTACTCGTCTCAGTACGAGCACGGCAGC
AGGCGGCCGGACTGGCGTCCCCGACAGGGCGTGCTCGTGGCCTCCCTGAG
GGAGCACGGCGGGGCCGTGAACCGGCTCGCGCTGTCGCAGGACCAGGCGT
TTTTTGTGTCCGCCTCGTCCGACAGCACTTGCAAGGTG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13433:106..3643+

>mRNA_E-fasciculatus_F_contig13433.2577.1 ID=mRNA_E-fasciculatus_F_contig13433.2577.1|Name=mRNA_E-fasciculatus_F_contig13433.2577.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2826bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13433:106..3643+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTATTCCTTGCCGGGGGGCTCGTTGGACGAGGCTACCCTGCTCGATGC
CCTCAGACCCCCCGTGCCCCGCGCCGTCTTCGATTCCGCGGTGGGCGAAG
TGATCGAGGCTAGGAGGATAAGGGCTGCCGGAGGCAGAGGCGGCGGCGGC
GGCGGCGCAGGGGCAGAGAGGTATTCCTTGCCGGGGGGCTCGTTGGACGA
GGCTACCCTGCTCGATGCCCTCAGACCCCCCGTGCCCCGCGCCGTCTTCG
ATTCCGCGGTGGGCGAAGTGATCGAGGCTAGGAGGATAAGGGCTGCCGGA
GGCAGAGGCGGCGGCGGCGGCGGCGCAGGGGCAGAGGTCGGCGGGCAGCC
GCTCCAGCAGTTCCCGGCGAGTGACAATGCCGCCGGCGGCGGCGACTACC
GGCGACAGGCTGCCGACAGCCGGGACGGGGGCATCGGCGGCCGCGATCAT
GCCCGAAGAAGTCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGACG
AAACGTGTCGGGAGCGGAGAACGGGGGGGAGGGGGGGGTCGTCGCGACAG
CGGAAGAGAAGGAGGCGTTGTCTCTCCTGAAGGGGTCGGCGGGCAGCCGC
TCCAGCAGTTCCCGGCGAGTGACAATGCCGCCGGCGGCGGCGACTACCGG
CGACAGGCTGCCGACAGCCGGGACGGGGGCATCGGCGGCCGCGATCATGC
CCGAAGAAGTCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGACGAA
ACGTGTCGGGAGCGGAGAACGGGGGGGAGGGGGGGGTCGTCGCGACAGCG
GAAGAGAAGGAGGCGTTGTCTCTCCTGAAGGGGTACATCGACACCGCTGC
TCAGCACGCCGCTAACAAGGGCCGCGGCAGCGACGGCGGCGGCAGCGTTG
CGGGGGAGCGATCGTCTCCCGTCTACCTCCCGGAGTCTCTGTCCCAGGCC
ATCTACGTGCCGACGCAGAAGATTACCACTCTGCACCCCGGGGTGGGTGC
GGTGGCCGTCGCTGTGGCGACGGCGCTCGAAAGCGGCCCCGCGGCTGGGG
GGGACGGCCGTCGGGAGGCGGGGGGGGATGAGGGCGGGGAGGACGACATC
GACCTGCGGCTGTCCTCTCCCGCGCTGTCGGCGACCCCTGCGCTTCTCCA
GAGCGTTACAGGTACATCGACACCGCTGCTCAGCACGCCGCTAACAAGGG
CCGCGGCAGCGACGGCGGCGGCAGCGTTGCGGGGGAGCGATCGTCTCCCG
TCTACCTCCCGGAGTCTCTGTCCCAGGCCATCTACGTGCCGACGCAGAAG
ATTACCACTCTGCACCCCGGGGTGGGTGCGGTGGCCGTCGCTGTGGCGAC
GGCGCTCGAAAGCGGCCCCGCGGCTGGGGGGGACGGCCGTCGGGAGGCGG
GGGGGGATGAGGGCGGGGAGGACGACATCGACCTGCGGCTGTCCTCTCCC
GCGCTGTCGGCGACCCCTGCGCTTCTCCAGAGCGTTACAGGGATGCACAC
GAACGCGGTGGACGCTCGGAGGGCAATGGCCCTAGTGGAACAGGCAGATG
TGGACGGAACAGCGGCAAGTAGTGGGCGGCACGAGAACAGCAGCAGCTAT
GCGGCTAGCGCAACGCTGGCGTCCTCTGCCGCCGCCGCCATTGCGTCGAG
CCAGCAAGGAAGGGGTGGGAATCCGTCCGCTGCGGCGTGGGAGGCGTCTA
GGGCGGGTGGGGTCGGTGGCAGGCCGGACGATGCGGCTGCCCTAGTGAGA
AGGGCCAAGGCGCTCGGGGTGCCCCCGCTACCCCCAGACCTTGGGGCCGT
CAGGGATGCACACGAACGCGGTGGACGCTCGGAGGGCAATGGCCCTAGTG
GAACAGGCAGATGTGGACGGAACAGCGGCAAGTAGTGGGCGGCACGAGAA
CAGCAGCAGCTATGCGGCTAGCGCAACGCTGGCGTCCTCTGCCGCCGCCG
CCATTGCGTCGAGCCAGCAAGGAAGGGGTGGGAATCCGTCCGCTGCGGCG
TGGGAGGCGTCTAGGGCGGGTGGGGTCGGTGGCAGGCCGGACGATGCGGC
TGCCCTAGTGAGAAGGGCCAAGGCGCTCGGGGTGCCCCCGCTACCCCCAG
ACCTTGGGGCCGTCAGGGCTCCGAACGGCGCCAAATACTCCCACTACCTC
CTCGATTCCGGCGGTGGCGGTGGTGGCGGCGGTGGCGGAGCAGGAGGCGC
GGGCGGCGGCGCGGGATCCTCCAACTCGGCGTCATCGGGGGCCGGGGGCG
CGAACTCCAGATCCGCCTACCCGGCGACGGCGGCGGCGGCGGCGCAGCAG
GAGCAGTACTCGTCTCAGTACGAGCACGGCAGCAGGCGGCCGGACTGGCG
TCCCCGACAGGGCGTGCTCGTGGCCTCCCTGAGGGAGCACGGCGGGGCCG
TGAACCGGCTCGCGCTGTCGCAGGACCAGGCGTTTTTTGTGTCCGCCTCG
TCCGACAGCACTTGCAAGGTGGGCTCCGAACGGCGCCAAATACTCCCACT
ACCTCCTCGATTCCGGCGGTGGCGGTGGTGGCGGCGGTGGCGGAGCAGGA
GGCGCGGGCGGCGGCGCGGGATCCTCCAACTCGGCGTCATCGGGGGCCGG
GGGCGCGAACTCCAGATCCGCCTACCCGGCGACGGCGGCGGCGGCGGCGC
AGCAGGAGCAGTACTCGTCTCAGTACGAGCACGGCAGCAGGCGGCCGGAC
TGGCGTCCCCGACAGGGCGTGCTCGTGGCCTCCCTGAGGGAGCACGGCGG
GGCCGTGAACCGGCTCGCGCTGTCGCAGGACCAGGCGTTTTTTGTGTCCG
CCTCGTCCGACAGCACTTGCAAGGTG
back to top