mRNA_E-fasciculatus_F_contig1343.2574.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1343.2574.1
Unique NamemRNA_E-fasciculatus_F_contig1343.2574.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1343.2574.1 vs. uniprot
Match: D7FLM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM3_ECTSI)

HSP 1 Score: 530 bits (1365), Expect = 5.140e-189
Identity = 277/302 (91.72%), Postives = 286/302 (94.70%), Query Frame = 1 
Query:    1 MGCGARKCMTPGEDHPQLPHAKRREGAGPGPGAYATGDSAVMGHHGGTFAAADSRRAAAAALEMAVGRLKTLEWRIDFIRRGEREPEKLRPGQSLVVRTQSGHELRRIEEKASRLRSEVGRLGKLAASQASKRDPLPGASIGGGGRVGGNERRPATTAADGSTGRDKGGPAGQGKDRFYDPIPSTATFLESPGPGAYSLTSGEGAFGRASISRSPAFDLMQRRVVGDQAAAGRSLASLHLHSAENGGGSGSSNSRGGRDGLGAPFHAYLSEAGPGHYTPDMSAPPLPNEARRWRRGSGARET 906
            MGCGARKCMTPG+DHPQLPHAKRR+GAGPGPGAYATGDSAVMGHHGGTFAAAD+RRAA AALEM VGRLKTLEWRI+FIRRGEREPEKLRPGQSLVVRTQSG EL R+EEKASRLRSE+ RLGKLAAS+AS RDPLPGASIG GGR GGNERRPATTAAD STGRDK GPAGQGKDRFYDPI STATFLESPGPGAYSLTSGEGAFGRASISRSPAFDLMQRRV+GDQAAAGRSLASLHLHSAENGGGSGS NSRGGRDGLGAPFHAYLSE G GHYTPDMSAPPLPNEARRWRRG G R+T
Sbjct:    1 MGCGARKCMTPGKDHPQLPHAKRRDGAGPGPGAYATGDSAVMGHHGGTFAAADNRRAATAALEMVVGRLKTLEWRIEFIRRGEREPEKLRPGQSLVVRTQSGQELMRMEEKASRLRSEIKRLGKLAASEASTRDPLPGASIGRGGRAGGNERRPATTAADCSTGRDKRGPAGQGKDRFYDPISSTATFLESPGPGAYSLTSGEGAFGRASISRSPAFDLMQRRVIGDQAAAGRSLASLHLHSAENGGGSGSGNSRGGRDGLGAPFHAYLSETGTGHYTPDMSAPPLPNEARRWRRGGGVRDT 302
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1343.2574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLM3_ECTSI5.140e-18991.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1343contigE-fasciculatus_F_contig1343:13514..17093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_000600.1
Exons5
Model size912
Cds size912
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1343.2574.1prot_E-fasciculatus_F_contig1343.2574.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1343 13514..17093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927844.0853958-CDS-E-fasciculatus_F_contig1343:13513..136221622927844.0853958-CDS-E-fasciculatus_F_contig1343:13513..13622Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 13514..13622 +
1695995719.4246945-CDS-E-fasciculatus_F_contig1343:13513..136221695995719.4246945-CDS-E-fasciculatus_F_contig1343:13513..13622Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 13514..13622 +
1622927844.1057231-CDS-E-fasciculatus_F_contig1343:14077..142311622927844.1057231-CDS-E-fasciculatus_F_contig1343:14077..14231Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 14078..14231 +
1695995719.4339545-CDS-E-fasciculatus_F_contig1343:14077..142311695995719.4339545-CDS-E-fasciculatus_F_contig1343:14077..14231Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 14078..14231 +
1622927844.1246176-CDS-E-fasciculatus_F_contig1343:15307..155631622927844.1246176-CDS-E-fasciculatus_F_contig1343:15307..15563Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 15308..15563 +
1695995719.4503887-CDS-E-fasciculatus_F_contig1343:15307..155631695995719.4503887-CDS-E-fasciculatus_F_contig1343:15307..15563Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 15308..15563 +
1622927844.1394017-CDS-E-fasciculatus_F_contig1343:15971..160901622927844.1394017-CDS-E-fasciculatus_F_contig1343:15971..16090Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 15972..16090 +
1695995719.4588113-CDS-E-fasciculatus_F_contig1343:15971..160901695995719.4588113-CDS-E-fasciculatus_F_contig1343:15971..16090Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 15972..16090 +
1622927844.1554744-CDS-E-fasciculatus_F_contig1343:16819..170931622927844.1554744-CDS-E-fasciculatus_F_contig1343:16819..17093Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 16820..17093 +
1695995719.4688878-CDS-E-fasciculatus_F_contig1343:16819..170931695995719.4688878-CDS-E-fasciculatus_F_contig1343:16819..17093Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 16820..17093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1343.2574.1

>prot_E-fasciculatus_F_contig1343.2574.1 ID=prot_E-fasciculatus_F_contig1343.2574.1|Name=mRNA_E-fasciculatus_F_contig1343.2574.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=304bp
MGCGARKCMTPGEDHPQLPHAKRREGAGPGPGAYATGDSAVMGHHGGTFA
AADSRRAAAAALEMAVGRLKTLEWRIDFIRRGEREPEKLRPGQSLVVRTQ
SGHELRRIEEKASRLRSEVGRLGKLAASQASKRDPLPGASIGGGGRVGGN
ERRPATTAADGSTGRDKGGPAGQGKDRFYDPIPSTATFLESPGPGAYSLT
SGEGAFGRASISRSPAFDLMQRRVVGDQAAAGRSLASLHLHSAENGGGSG
SSNSRGGRDGLGAPFHAYLSEAGPGHYTPDMSAPPLPNEARRWRRGSGAR
ETA*
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mRNA from alignment at E-fasciculatus_F_contig1343:13514..17093+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1343.2574.1 ID=mRNA_E-fasciculatus_F_contig1343.2574.1|Name=mRNA_E-fasciculatus_F_contig1343.2574.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3580bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1343:13514..17093+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGTGCGGAGCACGCAAATGCATGACCCCGGGGGAGGACCACCCCCA
GCTGCCCCACGCCAAGCGCCGTGAAGGTGCAGGTCCTGGCCCTGGTGCAT
ACGCTACCGGTGAGAGACAACGATACAACTACCGTACGATGGATCTGGAG
CATGACCAGGGCCTACAAGTAGTTCTGGGTTCGTCTTTCAAAGCGATTTA
GGCCGTCTAGGAAATTAGGTATCTTGACACTGCCGTGTGAAGGCGCTATT
GCAGGTCAGAGCTATTTTGAACAAGATGAAGTCGCGCCATTGGAATATCC
GCATCAACCTCACAACAATAATTTTGCGTTGGGAGTGGCATGGACTACTG
TCGTTGAGGTCTCGTGTTGAGCCAGCGAATGAAGACTAAGCTACAACAAA
AACGGCGTGAAGCGGACGGCAAACCGAAAAAGCAAACGAACCAAGGACCT
CGCGAAGCCTTTGGGCTGCAGTGTGTACTACCTCGACGTACCCTCTCCTT
GCTTTGCCCTCAATAGCGCAACCGGGCACACCAAACGTGCTCTGGGCCGA
CCCTTGTTTACCAGGCGACTCGGCAGTGATGGGACATCACGGAGGAACAT
TCGCTGCAGCGGATAGCAGGAGGGCGGCCGCGGCGGCGCTGGAGATGGCG
GTCGGGCGGCTTAAGACGCTGGAATGGAGGATCGACTTCATTCGGCGGGG
GGAGAGAGAGCCCGAGAAGTAAGGACTGTTTGAACGGGCCAAAAATATCG
CTTCGAATTTCCTAATCCCAAGTTCCGAGATACTAGAACCTCTGGCTTTG
GGCTCCGAAAGAAAAGCGATCGTTGCCACTTTACCCAAAATATCAAGCTA
GCGACAGGGGTCCATCCAGCTTGGAGCGGCATCTTCCAAGTTGGTTGGGG
GAAAGCTACCAGGTCAGAACTTCACACGATTGGGGTGGCCCGTTTTCAAG
GGTCCAAACCCGCCTGTAACAGATGAGACGGGCTGCGGTGATTGGAAGCG
TCAGCAGAGTCGCGGAAAATTCGGCCAGTGTTGTTCGTGAGGACGGGACT
GACGGTAAAAGGAGCCTGTTGAATCGTCAGTTTTCAAGACATGCTTAAGA
TTCATGCTAGAGATTATCCGGCCAAAAATTGACTAATGACGATGAGTGGG
ACTTGACTGGATGAAATGTCGCAGCCGAACCCACGCTTGGTGGTCCGAGT
GGCTCTCTGGCGTGCCTGTCCCTGTATTTCGACTTGCCCCTTCTTGCAAA
AGACACAAACGCTACCGCGAGTTCGTCACACCCCGATGTCCCGCACGATG
CGTCTCGACCGCTCAAGGCCAAAGCTCGGTGTAGGAGGTTTTCTACACAA
GGCCAAACGTTAAGCACCCCCGTGTCTCAGAGCTTCGTTCCTGAACTGCC
TTACCCTCCATGCAGACTCATAGTGGTGCAGCCAATGTTACTTGTAGAAG
CTTGTTTTCGTGAGAACTCGGACTAAACCTATGTAAGTGACGCATCCATG
GCACGCGAAGGCACAGCACTCTCGCTCCTCACCCAAAATTACTAAAAACG
CGTGCCTGTTTCAGGTAACCTAAATAGTCCGGGTCGATTTGATAAGAAGA
GAAATCGGAAGTGTTTTATTGTGAACCCAACTGCAAATAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACCATATACGAATATA
CGCGCTCCAGACCTCTGGCAGCGCTGGATCGACAACCAAACACCGCCGCT
CTCATTCACTGCTGTTTTTGTCATGGCCCTCTCACCCCCCACAGACTGCG
ACCAGGTCAATCCCTCGTGGTACGGACCCAATCCGGGCACGAGCTACGGC
GCATCGAGGAGAAAGCGTCCCGGTTGAGATCAGAAGTCGGACGCCTCGGC
AAGCTCGCCGCTTCACAAGCTTCCAAGCGAGACCCACTCCCGGGAGCATC
GATCGGTGGAGGGGGTAGAGTAGGGGGCAACGAGCGGCGGCCAGCCACGA
CTGCCGCGGATGGCAGCACCGGAAGGGACAAGGGTGGGCCTGCGGGTCAG
GTTCGTGCTCGGTATATGGATGCCGTTGTTCTTGCTGTTCCAGCACGACG
TGTACGTGACGTATGCCAGAGCTTAGCGGCACGGTTCGTTTCCAATCGTA
CGAGACGATATCGAGCGAGAACGCCACGGACTAAGGTGACCTCGCACAAT
CATATAAAGAGGTGGAAATCACAATCCAATCTAACGTTTGTACACGTGGC
GGGGAGAACGACAAGCCAGAAACCCTCACGGAGTGGTAATTTGTTGTTTC
ATCACTTGCCCCTGCCTCTTTGCACCCCGGACTGCCCCGGATCATGAACT
ATCAGAGCAAGCGCAAAGGCGCGTTTGTGTCCAAGCCGATAGTCCAAACG
ATCCGCCTTCACACCCCTCTGAACCTGCTGTTGACTGTTCTCCCGTGGCT
GATGGCAGGGGAAAGACCGGTTCTACGACCCGATACCAAGCACTGCAACG
TTTTTGGAATCCCCGGGGCCGGGTGCATACAGTCTGACGAGCGGCGAGGG
GGCCTTCGGGAGGGCTTCGATCAGCAGGTACATTGCGCGCGTGACCCTCG
ATGCAGTAAGGGGTTTTGATCAAGAGGCTCCCCTTTGAAGGTCGTGTCAC
TTCGAAGCACCGCTCTCTCGATTCTTGATAGAGATAGATGGGCGTGCTCC
AAGAACAACCATATTGAGGTCAATAAATAAAAGTCTGTATGTGTCCGACT
CGGGAACAAGTTGCTGCTTTACGAAACACGGCCGGCGTAATCCAAACTAA
GCCGATAGACGGTCGCTGGCGAAACAACACAGTCCTGGCCCACTGGCGGG
ACCGTCCGCAATAGCTGAGCCTCGACTTGTGCACTAGACTAAATGGTAGG
GCATTGTGATGAGGGCCAGCACAACGCGGCCAGCCTCTCCCGTTCACCGA
CGCTTTCAGGAGTATACGACTACGGGTACGCCACGTTCCTCTTCTACTGT
CGCTATGGTGTGTTAATCAATCACGAACACACGCCCGCTCCTTCTCCGCC
CGTTCAAAGTTTTGCAATGATCTAGTGGGAGAGTAATGGAACGTGTCAGG
TGATCACGATGAGAACCTTGACCTCTTGTCGTGGTAAACAACTTGTTCAA
TCGTGTTGAAGGTTCGATATTCAGCGGCCAATGTCCAACCGGAATATGTC
GCCGGGTGCTCCACTACATACTGCCGCAACGATGACCATCGGCCGTCTCC
TTAACCCGTACTCCTCGCCTGTGCTCTTTCCCTCTCTTCTCGCTTGCCAA
CTGAAGATCCCCGGCGTTTGACCTGATGCAACGGAGGGTCGTCGGAGATC
AGGCCGCAGCGGGCCGTAGCCTTGCATCTCTTCACCTGCACTCCGCGGAG
AACGGTGGCGGGAGCGGCAGCAGCAACAGTCGAGGTGGTCGCGACGGGCT
AGGTGCACCGTTCCACGCGTACCTGTCCGAAGCTGGGCCGGGTCACTACA
CCCCGGATATGTCCGCGCCCCCGCTGCCGAACGAAGCTAGGCGATGGCGG
CGAGGTAGTGGCGCAAGGGAAACAGCGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1343:13514..17093+

>mRNA_E-fasciculatus_F_contig1343.2574.1 ID=mRNA_E-fasciculatus_F_contig1343.2574.1|Name=mRNA_E-fasciculatus_F_contig1343.2574.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1824bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1343:13514..17093+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGTGCGGAGCACGCAAATGCATGACCCCGGGGGAGGACCACCCCCA
GCTGCCCCACGCCAAGCGCCGTGAAGGTGCAGGTCCTGGCCCTGGTGCAT
ACGCTACCGATGGGGTGCGGAGCACGCAAATGCATGACCCCGGGGGAGGA
CCACCCCCAGCTGCCCCACGCCAAGCGCCGTGAAGGTGCAGGTCCTGGCC
CTGGTGCATACGCTACCGGCGACTCGGCAGTGATGGGACATCACGGAGGA
ACATTCGCTGCAGCGGATAGCAGGAGGGCGGCCGCGGCGGCGCTGGAGAT
GGCGGTCGGGCGGCTTAAGACGCTGGAATGGAGGATCGACTTCATTCGGC
GGGGGGAGAGAGAGCCCGAGAAGCGACTCGGCAGTGATGGGACATCACGG
AGGAACATTCGCTGCAGCGGATAGCAGGAGGGCGGCCGCGGCGGCGCTGG
AGATGGCGGTCGGGCGGCTTAAGACGCTGGAATGGAGGATCGACTTCATT
CGGCGGGGGGAGAGAGAGCCCGAGAAACTGCGACCAGGTCAATCCCTCGT
GGTACGGACCCAATCCGGGCACGAGCTACGGCGCATCGAGGAGAAAGCGT
CCCGGTTGAGATCAGAAGTCGGACGCCTCGGCAAGCTCGCCGCTTCACAA
GCTTCCAAGCGAGACCCACTCCCGGGAGCATCGATCGGTGGAGGGGGTAG
AGTAGGGGGCAACGAGCGGCGGCCAGCCACGACTGCCGCGGATGGCAGCA
CCGGAAGGGACAAGGGTGGGCCTGCGGGTCAGACTGCGACCAGGTCAATC
CCTCGTGGTACGGACCCAATCCGGGCACGAGCTACGGCGCATCGAGGAGA
AAGCGTCCCGGTTGAGATCAGAAGTCGGACGCCTCGGCAAGCTCGCCGCT
TCACAAGCTTCCAAGCGAGACCCACTCCCGGGAGCATCGATCGGTGGAGG
GGGTAGAGTAGGGGGCAACGAGCGGCGGCCAGCCACGACTGCCGCGGATG
GCAGCACCGGAAGGGACAAGGGTGGGCCTGCGGGTCAGGGGAAAGACCGG
TTCTACGACCCGATACCAAGCACTGCAACGTTTTTGGAATCCCCGGGGCC
GGGTGCATACAGTCTGACGAGCGGCGAGGGGGCCTTCGGGAGGGCTTCGA
TCAGCAGGGGAAAGACCGGTTCTACGACCCGATACCAAGCACTGCAACGT
TTTTGGAATCCCCGGGGCCGGGTGCATACAGTCTGACGAGCGGCGAGGGG
GCCTTCGGGAGGGCTTCGATCAGCAGATCCCCGGCGTTTGACCTGATGCA
ACGGAGGGTCGTCGGAGATCAGGCCGCAGCGGGCCGTAGCCTTGCATCTC
TTCACCTGCACTCCGCGGAGAACGGTGGCGGGAGCGGCAGCAGCAACAGT
CGAGGTGGTCGCGACGGGCTAGGTGCACCGTTCCACGCGTACCTGTCCGA
AGCTGGGCCGGGTCACTACACCCCGGATATGTCCGCGCCCCCGCTGCCGA
ACGAAGCTAGGCGATGGCGGCGAGGTAGTGGCGCAAGGGAAACAGCGTGA
ATCCCCGGCGTTTGACCTGATGCAACGGAGGGTCGTCGGAGATCAGGCCG
CAGCGGGCCGTAGCCTTGCATCTCTTCACCTGCACTCCGCGGAGAACGGT
GGCGGGAGCGGCAGCAGCAACAGTCGAGGTGGTCGCGACGGGCTAGGTGC
ACCGTTCCACGCGTACCTGTCCGAAGCTGGGCCGGGTCACTACACCCCGG
ATATGTCCGCGCCCCCGCTGCCGAACGAAGCTAGGCGATGGCGGCGAGGT
AGTGGCGCAAGGGAAACAGCGTGA
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