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Homology
BLAST of mRNA_E-fasciculatus_F_contig1343.2573.1 vs. uniprot
Match: D7FLM2_ECTSI (Tetratricopeptide repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM2_ECTSI) HSP 1 Score: 422 bits (1086), Expect = 8.020e-133 Identity = 215/249 (86.35%), Postives = 218/249 (87.55%), Query Frame = 1
Query: 1 MLPALDRPRGEGGAGGPLVPLPLEKPKFHHGEARPKRPKKEKPPKRVKRGERQSIGDEDFGQSTLLDDELRGHVNARTIAAASMEMARSKPQQXXXXXXXXXXGFQDGDEDSRLCQELLSKAPHGHNDASKYWSRSLRLYAAQSHPEEFALIQLKLAQTFYATAMLGTVVKDVLKSLESCLHHYNICLQLYNPSRYPRRWGLAALEMGMALGAMADLVEREIPRVKPDGEAGKDAVAGFYTEVAVMTNK 747
MLPALDRPRG+GG GGPLVPLPLEKPKFHHGEARPKR GERQSIGDEDFGQSTLLDDELRGHVNARTIAAAS+EMARSKPQQ G QDGDEDSRLCQELLSKAPHGHNDA KYWSRSLRLY AQSHPEEFALIQLKLAQTFY TAMLGTVVKDVLKSLESCLHHYNICLQLYNPSRYPRRWGLAALEMGMALGAMADLVEREI RVKPD EAG DAVAGFY EVAV+TNK
Sbjct: 1 MLPALDRPRGDGGPGGPLVPLPLEKPKFHHGEARPKRXXXXXXXXXXXXGERQSIGDEDFGQSTLLDDELRGHVNARTIAAASVEMARSKPQQQHRQQRNNDGGTQDGDEDSRLCQELLSKAPHGHNDAFKYWSRSLRLYVAQSHPEEFALIQLKLAQTFYTTAMLGTVVKDVLKSLESCLHHYNICLQLYNPSRYPRRWGLAALEMGMALGAMADLVEREIQRVKPDAEAGTDAVAGFYKEVAVLTNK 249
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 780 |
| Cds size | 780 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1343.2573.1 >prot_E-fasciculatus_F_contig1343.2573.1 ID=prot_E-fasciculatus_F_contig1343.2573.1|Name=mRNA_E-fasciculatus_F_contig1343.2573.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=260bp
MLPALDRPRGEGGAGGPLVPLPLEKPKFHHGEARPKRPKKEKPPKRVKRG
ERQSIGDEDFGQSTLLDDELRGHVNARTIAAASMEMARSKPQQQNRQQRN
NGGGFQDGDEDSRLCQELLSKAPHGHNDASKYWSRSLRLYAAQSHPEEFA
LIQLKLAQTFYATAMLGTVVKDVLKSLESCLHHYNICLQLYNPSRYPRRW
GLAALEMGMALGAMADLVEREIPRVKPDGEAGKDAVAGFYTEVAVMTNKA
GGYGGSGGH* back to topmRNA from alignment at E-fasciculatus_F_contig1343:8382..11423- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1343.2573.1 ID=mRNA_E-fasciculatus_F_contig1343.2573.1|Name=mRNA_E-fasciculatus_F_contig1343.2573.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3042bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1343:8382..11423- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCCGGCGCTAGACAGACCACGGGGGGAGGGGGGTGCTGGCGGCCC
CTTAGTGCCGTTGCCGTTGGAGAAGCCGAAATTTCACCACGGCGAAGCTC
GCCCGAAGCGGCCGAAGGTATGATGAGAGGCGACGTGTTGCGTCCTACAA
CTGTTGTTATTTACTGTCGTGCTGGATACAATGATACCAGGATGAAATGA
TATCAGTGAACAACAGGTAAAGTGTTGAAAACAGTCTGTGCGTTTGACTA
CTACTGTACAAGACTGCCTTCCGCTCGAAATAACGCCGTCTTGGAAATGG
CGGCAAGCGGAGAGAAGTTGTTCACGTCAAGATGATGCTCAGTATTCCTC
GCCAACATTTTCCCCATAGTTCACCGTTGGGCAAATATGCTAGGCTTAGG
CCAAAGTCGCACTACTCGCAGTGAATCTGTAGGTGAGATTCGCCTGGAGC
CGATTTAGAAATTTGTTCGATCGAAGAAAGCACCATGAGCACCGACATCG
ACCGGTAGAACGAGGGCTGCTTGGATTGTTCCATTCACTGAGACACAATG
CATTGCTGCCGATAGAGCCAGCGTGCAGTCGCAAGTATGCTCGATTGCAC
GACCGGTCCAGTACTCTTAACACTGTCATGTGAAGTCGTTATCTGTAATC
TGCAGTGGCAAACCCGCGGAAGTAGTCCGCCATATTAGCTTCCTTTATGA
AGTAGTCCGCCATTGTTGGGGGTTCTTCTCTTCCTCTCCCTCATTCGAGC
ATGATCCCGAATCAACCCTCAGAAAGAAAAGCCACCTAAACGAGTCAAGC
GCGGAGAGCGTCAGTCTATAGGCGATGAAGATTTCGGCCAGAGCACGTTG
CTAGACGATGAGCTTAGAGGACATGTCAACGCCCGGACAATCGCGGCGGC
GAGCATGGAGATGGCCCGATCGAAACCGCAGCAGCAGAACCGCCAGCAGC
GCAAGTAAGCTTGGGACCTGCCCGCACGTTTCGAATTGCATACGCGGGGC
AGCGAGCCCACATTTGAGTGAGATTGTTCGTGCAGCACGTTTGAGAGATA
CATGGGAACTCGCTAACATTGGGTCGGCACACAGCGAAAGCATGCGTTGA
TTTCCCCTTTCGGCTCTACGACGAGCAGTCAAATGTGGACGAGAGAGCGC
TACCCACAGGGGCTGGCGACGAGACATCGGCTCTGCTACTTCCTGCCTTC
TGACCATGCGATCATTGGTCATTTTGACGAATGCCACAGGCAGGCAATTT
TGTGAAAGCGAGGGGGTTTATGCAACTCTAGTCTTCACGACCAACTTGTT
TTTGGTTGATCCTTTCAGCAATGGCGGTGGCTTCCAGGACGGGGATGAGG
ATTCGAGGCTGTGCCAAGAGCTCCTCTCCAAAGCCCCCCACGGCCATAAC
GATGCCTCCAAGTATTGGTCCCGCTCTCTCAGGCTCTACGCGGCGCAGTC
CCACCCCGAGGAATTCGCTCTGGTAAGCAATGACACGATCGACATTGATA
TTCTTGAAGCTGATGTCGTTGTCCGTACTGCCTCGGTCGAATCTGTGTCA
AACCTCGCCCGTAGTTCGTAGGCCGCGTAGTGACTACTCGACACCGGATG
TCATCCGAGATAGTGATAAGGGTGGAGCTCCAACTATCGGCATTGTCTTT
GTGTATCAACCGGAGCACTACATGAAGGGGTTGTCCATAGCTTTTACCAC
CCCCCGGTGTGCGGCAGTGGGGTCGCCGCTCTGCGGACTTTAGTTTAGCT
TCGTTCAGAGCCATCGCATTTTTGCATCGAAATCGTGTACTATAAGAGGT
ATTTTGTCGAGAACTGCGCCAATGCACGTAGGAGCGCAAGCGGTGAGGCA
AGCGGTGAGGCAAGCGGTGAGGCATCATTGCCTTGTGGCATGTATCAAGC
AAAGTCCCTGCCCTCCTTGCGTGCGCGTGCCCTCTTCCCGACGACAGATT
CAACTAAAGCTGGCTCAAACCTTCTACGCAACGGCCATGCTGGGCACCGT
AGTCAAGGATGTGAGTGTTCGCCGGAGTATTTGTTTTCGCAAGGTCTGTC
CCGGCGGTCCCATGGGACGTCCCATGGGACGTCCCACGCATCTCGTGGGC
GTCATTTGAGACGTCTAATGGGGAACGCTAAATTGTGAGGGCTAGTTTTT
TTTTTATCACCGTCACCCAGGATGATAACGTGTCATGGGCTTGCTTCTCT
CTTGAGGAAAAGCGCTTTCCGAAGGAAGCGGATTGATCGCATCTGGCTGC
TATGTTTCGATGTTCTAATTTGAATGACAGTGTAGTTGGAATATCTGGAC
CCTTTCGTAGAATATGAATGCGAACTTGGGCTTATCGGCAGAGGCTGGGT
GCGATGGTAATTCAGCCTTCCCACTGACCTAAAACACTACCACACGAACA
CGTTAAACAACGCGTGAGCTAACGCGTACTCTTGGTTCCTTCTTGGGCTG
AGAGTTGTTTCGTGTACAAGAAAATGCTATCACATTCCGTACGCGCACTC
TTCTTCCTCTCGAGCGCTGGCGGGGTCAACAACGTTCACGATCGCGCCTC
GTCGCCATACAGGTGCTGAAGAGCCTCGAAAGCTGCCTTCACCACTACAA
CATCTGCTTGCAGCTGTACAACCCTTCCCGGTACCCCCGTCGATGGGGCT
TAGCCGCCCTCGAGATGGGGATGGCCTTGGGAGCCATGGCGGATCTCGTT
GAGCGGGTGAGGGCGCACCCGAGAAATGTTCGCCCACCACTACGGCAATC
TCTGTCTCCCGTGCGCCAGTAGTAGTATATTTTTGGCGGGACCGGCGAAC
CCCCCTGGGATGATTGATGTTAACATTTGAACGATCTCGGTTGGCCATCA
CCAGATACGTTACATGAACCATCCGGGGTTTCAATTTTCCACCATTGGTT
GATTTTGGCGTGAGATTCGCAGGAAATCCCGCGGGTTAAGCCAGACGGCG
AGGCTGGAAAGGATGCCGTCGCGGGTTTCTACACGGAAGTCGCCGTTATG
ACCAACAAGGCAGGTGGTTACGGTGGTTCCGGGGGGCATTAA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1343:8382..11423- >mRNA_E-fasciculatus_F_contig1343.2573.1 ID=mRNA_E-fasciculatus_F_contig1343.2573.1|Name=mRNA_E-fasciculatus_F_contig1343.2573.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1560bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1343:8382..11423- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCCGGCGCTAGACAGACCACGGGGGGAGGGGGGTGCTGGCGGCCC
CTTAGTGCCGTTGCCGTTGGAGAAGCCGAAATTTCACCACGGCGAAGCTC
GCCCGAAGCGGCCGAAGATGCTGCCGGCGCTAGACAGACCACGGGGGGAG
GGGGGTGCTGGCGGCCCCTTAGTGCCGTTGCCGTTGGAGAAGCCGAAATT
TCACCACGGCGAAGCTCGCCCGAAGCGGCCGAAGAAAGAAAAGCCACCTA
AACGAGTCAAGCGCGGAGAGCGTCAGTCTATAGGCGATGAAGATTTCGGC
CAGAGCACGTTGCTAGACGATGAGCTTAGAGGACATGTCAACGCCCGGAC
AATCGCGGCGGCGAGCATGGAGATGGCCCGATCGAAACCGCAGCAGCAGA
ACCGCCAGCAGCGCAAAAAGAAAAGCCACCTAAACGAGTCAAGCGCGGAG
AGCGTCAGTCTATAGGCGATGAAGATTTCGGCCAGAGCACGTTGCTAGAC
GATGAGCTTAGAGGACATGTCAACGCCCGGACAATCGCGGCGGCGAGCAT
GGAGATGGCCCGATCGAAACCGCAGCAGCAGAACCGCCAGCAGCGCAACA
ATGGCGGTGGCTTCCAGGACGGGGATGAGGATTCGAGGCTGTGCCAAGAG
CTCCTCTCCAAAGCCCCCCACGGCCATAACGATGCCTCCAAGTATTGGTC
CCGCTCTCTCAGGCTCTACGCGGCGCAGTCCCACCCCGAGGAATTCGCTC
TGCAATGGCGGTGGCTTCCAGGACGGGGATGAGGATTCGAGGCTGTGCCA
AGAGCTCCTCTCCAAAGCCCCCCACGGCCATAACGATGCCTCCAAGTATT
GGTCCCGCTCTCTCAGGCTCTACGCGGCGCAGTCCCACCCCGAGGAATTC
GCTCTGATTCAACTAAAGCTGGCTCAAACCTTCTACGCAACGGCCATGCT
GGGCACCGTAGTCAAGGATATTCAACTAAAGCTGGCTCAAACCTTCTACG
CAACGGCCATGCTGGGCACCGTAGTCAAGGATGTGCTGAAGAGCCTCGAA
AGCTGCCTTCACCACTACAACATCTGCTTGCAGCTGTACAACCCTTCCCG
GTACCCCCGTCGATGGGGCTTAGCCGCCCTCGAGATGGGGATGGCCTTGG
GAGCCATGGCGGATCTCGTTGAGCGGGTGCTGAAGAGCCTCGAAAGCTGC
CTTCACCACTACAACATCTGCTTGCAGCTGTACAACCCTTCCCGGTACCC
CCGTCGATGGGGCTTAGCCGCCCTCGAGATGGGGATGGCCTTGGGAGCCA
TGGCGGATCTCGTTGAGCGGGAAATCCCGCGGGTTAAGCCAGACGGCGAG
GCTGGAAAGGATGCCGTCGCGGGTTTCTACACGGAAGTCGCCGTTATGAC
CAACAAGGCAGGTGGTTACGGTGGTTCCGGGGGGCATTAAGAAATCCCGC
GGGTTAAGCCAGACGGCGAGGCTGGAAAGGATGCCGTCGCGGGTTTCTAC
ACGGAAGTCGCCGTTATGACCAACAAGGCAGGTGGTTACGGTGGTTCCGG
GGGGCATTAA back to top
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