mRNA_E-fasciculatus_F_contig13424.2570.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13424.2570.1
Unique NamemRNA_E-fasciculatus_F_contig13424.2570.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13424.2570.1 vs. uniprot
Match: A0A6H5JG15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG15_9PHAE)

HSP 1 Score: 350 bits (897), Expect = 2.480e-108
Identity = 212/302 (70.20%), Postives = 220/302 (72.85%), Query Frame = 1 
Query:   13 PSRGTGEVSATEQAFRPLTAEGRLRQLEAENLRLRFRVADLEGQVSVMEDELDRRGVARPMPTDANGINNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGTDGPLLSPRGRGYLARLVLEVCSEIEDSKKKAATEAKAKGGASISTVTTGGEGRMASRSRSIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASERSSGMTMSMSSLSSPSHGSHLPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPASFFRCV 918
            P RG  EVSATEQAF+PLT EGRLRQLEAENLRLRFRVADLEGQVSVMEDELDRRGVARPM  DAN  +N                                            XXXXXXX                   M  DGPLLSPRGRGYLARLVLEVCSEIEDS KKAATEAKAKGGAS +TV+T GEG + SR RSIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASERSSGM+MSMSSLSSP+HG  LPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPASFFR +
Sbjct:  438 PGRGAAEVSATEQAFQPLTVEGRLRQLEAENLRLRFRVADLEGQVSVMEDELDRRGVARPMIADANSSSNTESCRTGNAGTAVVASAGDNSNASPCRVKVEATGAAKTVKAAAAXXXXXXXSPKSRGVEGQGGGEAGAG-MVNDGPLLSPRGRGYLARLVLEVCSEIEDS-KKAATEAKAKGGASTNTVSTRGEG-ITSRPRSIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASERSSGMSMSMSSLSSPAHGGSLPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPASFFRLM 736
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BLAST of mRNA_E-fasciculatus_F_contig13424.2570.1 vs. uniprot
Match: D7G4K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K0_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 3.980e-100
Identity = 205/305 (67.21%), Postives = 209/305 (68.52%), Query Frame = 1 
Query:   13 PSRGTGEVSATEQAFRPLTAEGRLRQLEAENLRLRFRVADLEGQVSVMEDELDRRGVARPMPTDANGINNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGTDGPLLSPRGRGYLARLVLEVCSEIEDSKKKAATEAKAKGGASISTVTTG---GEGRMASRSRSIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASERSSGMTMSMSSLSSPSHGSHLPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPASFFRCV 918
            P R TGEVSATEQA +PLT EGRLRQLEAENLRLRFRVADLEGQVSVMEDELDRRGVARPMP D N  +N                                          XXXXXXXXX                      DGPLLSPRGRGYLARLVLEVCSEIEDS KKAATEAK                GEG +ASR RSIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASER SGM MSMSSLSSP+HG  LPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPASFFR V
Sbjct:  226 PGRATGEVSATEQASQPLTVEGRLRQLEAENLRLRFRVADLEGQVSVMEDELDRRGVARPMPADPNSSSNAESCRTGNAGTAVVASADDKSNASACRVKVEATGAAKTVKAAXXXXXXXXXPKSRGVEGEGGGEAGAGIV--NDGPLLSPRGRGYLARLVLEVCSEIEDS-KKAATEAKXXXXXXXXXXXXXXXXGEG-IASRPRSIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASERGSGMAMSMSSLSSPAHGGSLPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPASFFRLV 526
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13424.2570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG15_9PHAE2.480e-10870.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4K0_ECTSI3.980e-10067.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13424contigE-fasciculatus_F_contig13424:63..3217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_000340.1
Exons4
Model size918
Cds size918
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13424.2570.1prot_E-fasciculatus_F_contig13424.2570.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13424 63..3217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927843.2230582-CDS-E-fasciculatus_F_contig13424:62..2751622927843.2230582-CDS-E-fasciculatus_F_contig13424:62..275Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13424 63..275 -
1695995719.2005508-CDS-E-fasciculatus_F_contig13424:62..2751695995719.2005508-CDS-E-fasciculatus_F_contig13424:62..275Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13424 63..275 -
1622927843.2415862-CDS-E-fasciculatus_F_contig13424:1374..15511622927843.2415862-CDS-E-fasciculatus_F_contig13424:1374..1551Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13424 1375..1551 -
1695995719.2086997-CDS-E-fasciculatus_F_contig13424:1374..15511695995719.2086997-CDS-E-fasciculatus_F_contig13424:1374..1551Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13424 1375..1551 -
1622927843.2537134-CDS-E-fasciculatus_F_contig13424:2497..28811622927843.2537134-CDS-E-fasciculatus_F_contig13424:2497..2881Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13424 2498..2881 -
1695995719.219059-CDS-E-fasciculatus_F_contig13424:2497..28811695995719.219059-CDS-E-fasciculatus_F_contig13424:2497..2881Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13424 2498..2881 -
1622927843.2639291-CDS-E-fasciculatus_F_contig13424:3073..32171622927843.2639291-CDS-E-fasciculatus_F_contig13424:3073..3217Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13424 3074..3217 -
1695995719.2282836-CDS-E-fasciculatus_F_contig13424:3073..32171695995719.2282836-CDS-E-fasciculatus_F_contig13424:3073..3217Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13424 3074..3217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13424.2570.1

>prot_E-fasciculatus_F_contig13424.2570.1 ID=prot_E-fasciculatus_F_contig13424.2570.1|Name=mRNA_E-fasciculatus_F_contig13424.2570.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=306bp
GGGGPSRGTGEVSATEQAFRPLTAEGRLRQLEAENLRLRFRVADLEGQVS
VMEDELDRRGVARPMPTDANGINNNNTDSDSYRTGNASCTAGANADDKSN
ANANPGRVKVEAARTVTAAAAAAATTSPKSRGVEGEGGGEGGAGMGTDGP
LLSPRGRGYLARLVLEVCSEIEDSKKKAATEAKAKGGASISTVTTGGEGR
MASRSRSIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASERSSG
MTMSMSSLSSPSHGSHLPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPA
SFFRCV
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mRNA from alignment at E-fasciculatus_F_contig13424:63..3217-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13424.2570.1 ID=mRNA_E-fasciculatus_F_contig13424.2570.1|Name=mRNA_E-fasciculatus_F_contig13424.2570.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3155bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13424:63..3217- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGTGGCGGCCCCAGCCGCGGAACCGGCGAGGTTTCCGCGACCGAACA
GGCGTTTCGCCCCTTGACGGCGGAGGGCAGACTCAGACAGCTGGAAGCGG
AGAACTTGAGGCTGCGATTCCGAGTGGCAGATCTCGAAGGCCAGGTATGC
GTAGGCGCACTCTCTCGTGTATTCACGCATTGATTACCGGTGTTTGAGGG
TGGTAGAGCGATGTCAAACCATTGCACAGGTTGTTTTCTGTTGTATCATA
GCATGCTCATAGTTGTTTTCTCCTCCAACGTTTGGATGACGAAAAGAACA
AGAAAACCAAGGACGTTTTTTTTGTTGTTGTGACAGGTGAGTGTGATGGA
GGACGAGCTCGACAGGCGAGGGGTCGCTCGCCCGATGCCCACAGATGCCA
ACGGCATCAACAACAACAACACCGATAGCGATAGTTACAGAACCGGCAAC
GCCAGCTGCACGGCGGGTGCTAACGCTGACGACAAGAGCAACGCTAACGC
TAACCCTGGTCGGGTGAAGGTGGAGGCAGCAAGGACTGTGACAGCAGCAG
CAGCAGCAGCAGCAACGACTTCACCCAAGTCGAGAGGAGTTGAGGGGGAA
GGAGGGGGCGAGGGTGGGGCGGGGATGGGCACCGACGGTCCCCTGTTGTC
CCCCCGGGGGAGGGGGTACCTGGCGAGGCTGGTGCTGGAGGTCTGCTCGG
AGATCGAGGACAGTAAGAAGGTGGGCGGGTAGGTGGGAGGGATACACAAG
GTTTTCCTTTAGAGATTTCCAGCTCGGCAGCATGACCGTGCCGATGTACC
ATGGTAAATAGAACTAGAGGTTTGCTCGGAAATTCAGGAAGGTTAGACGG
TGGGTGTGGGTAGGTGGGAGGGAAACAGCAGCAATTGTTATTTCGGAATG
TCCAACGGCAGCTTGACCGTTCCAATTGTAGCAAGTGCCTTTCGCACGAT
TGTAGATAGGGTCTTTGACAACTCGGCAGTTTGGCCGTTACAATGTAACC
TATGTCTTTCACACCATGTAGTGTGAGTCCAAGGCGCTTTGACAGCTCGG
TAGCGTGACCATTCCTATGCAGCAGCATCAGTGTCTGTTTTTTGTATTTT
GGCTTTAGTCGAGAGAGAGGGAGAGAGAGAGACAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGACTGCTGCCTGAGTTCTAAGGTCTTTGCCATGAGAGA
GACATGCATCCTTGTTGTGGCTTGTCCCCGGCTGGTGCGCTTGAGGGGCA
TATCGAGGAAAGAGGAGGCAGAACCGAGAGCGTAAAAGGCACACAAGACA
CATGGGTCAAACTAAGAAAAGAAGAAAAATACAAAAGAGAATGTACATGT
TGAGAAACATGGTGTTGAGAACGAACGTCGTCCCGCCTCCTGTGCTGTCA
AATTCGCGCAATTTATGCGTACCAAGCAACAACATCTTCTTTGTGCTTGG
TGCATTGTGTGTGGTTTCTGCAGGGTGCTTTGGTTGCTGTCTAGTTGGGT
GTACTTCAATGGTTCTGTTCTGCATTCCTTGCTCGTCTTTCTTTGTTTCT
CGTGGGACGATCATGTGGTACTGCTGTATGTTTCGTGATTGTTTGAATAT
TCTGTTATTTTTTTTTCTGTTTTCTCATGGTGATTCCGGCGCGAATATTT
TGCACAACTACGGGAGAAGGCGGCTACGGAGGCCAAGGCTAAGGGAGGGG
CCAGCATTAGCACGGTGACTACGGGGGGCGAGGGGAGGATGGCGTCGCGC
TCGCGCTCAATTCCTCATTCAGAACGGCTGTGCAAGGTGCTGCCGAAGGT
CATGGAGACTGCCATCAGGGGGGTCAAAGACCTAGACGAACAGGTAACGG
ATGGCGATGTTGTTGCTACTGTTGCAAGTTTGGTAGTATGGTAGTATGGT
AGTAGGAGTACATGTGCAGTTGGTTTTTTTGTTGGTGGAGTTGGAGTAGA
TGTGTTTTTGGTGATGTTGTTGGTGATGTTGTAGTTGGTGACATCTTTGT
TGGCCTCTGGAGAGGGCGCCCACCGATGTCGCATACATTCGCTTTCCTCA
AGAAAACGGCGCGAATCTAGCCGGCCACAACCTAACAGAGAACGGTAGAT
GATGCTTCAAATTGTATACACTCACGAACTTGCCTACCGTGATGTCATGG
CATATTCATGACTCACGGTGTACCGTACCTTTGTCACCACCCGGGACGGT
ACGTACTTTTTAGCTCTTTAGTATTCTGGGTAGGAAGCTGTTTGGTGCTC
TCTGCATACATGTCGAAACCTTGACGAGTTTCTACGCATGCTATGCATGC
ATGTTGATGAGGGATGAGGGATGAGGGATGAGGAATGAGGAATGAGGTAG
GAGTTGCCGGCAACGACAGCACGTACACCTGCCTTGTCGCGTTCAACACC
TTTCCCTCGCCGGATATAATATTTGTATATGGTTCTCTTCTCTTTCACGA
CAGACCGCAGAGAGAGAGAGATGAGAGTCGTCTTCCTGACCGAGGTATTG
TATCTACGGTGCGACCATGATACCATGTGTTGTTGTACATGAGGCTTGTG
GTTACACCGATGTTGTCTAATTGCTGGTGGTGGCCGACACCCTCGCTAAC
CATCAGTCTTACAATAGCGGTGTGTTGTTGTCCACGCATCTCAGCGGGGG
GCACAGAGATAGCAATGCTTCGGTAGGGGTTATTCCAGTTCCCGGTCGTC
CCACAGCCTACTTTTCATCAAAGGTACATAGACTCTTTGACTGTCACTGA
TGGCAGCTGCCTTCACACCAACACCATCACATGAGCATACCTTACTTTCA
CCTTCCATCACGCCTTGATGACACTATAATACAATGCTCATGATGAGCCC
GCTCCGGATGCGCGCCTTGTACATCCTAACCTAACCATGCTCGCAACACC
ACCTTGCCCCTCTGCACTGCATCTTGCCCTGGCGGAGTGCAGGTGTTCGA
GCAGATGATGCGAACGGCCTCCGAGCGCAGCAGCGGGATGACCATGTCCA
TGTCGTCGCTGTCCTCCCCCTCCCACGGCAGCCACCTGCCGCTCGGCACC
CCCGCTCGCCGCCTCTCGAGCTGCGTCGTGGCGAGGGACGGAGGCGGGGA
GTTCTTCGCCCAGAGCCCCGCCCCTGGCCGGCCTGCAAGCTTCTTCAGGT
GCGTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13424:63..3217-

>mRNA_E-fasciculatus_F_contig13424.2570.1 ID=mRNA_E-fasciculatus_F_contig13424.2570.1|Name=mRNA_E-fasciculatus_F_contig13424.2570.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1836bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13424:63..3217- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGTGGCGGCCCCAGCCGCGGAACCGGCGAGGTTTCCGCGACCGAACA
GGCGTTTCGCCCCTTGACGGCGGAGGGCAGACTCAGACAGCTGGAAGCGG
AGAACTTGAGGCTGCGATTCCGAGTGGCAGATCTCGAAGGCCAGGGGGGT
GGCGGCCCCAGCCGCGGAACCGGCGAGGTTTCCGCGACCGAACAGGCGTT
TCGCCCCTTGACGGCGGAGGGCAGACTCAGACAGCTGGAAGCGGAGAACT
TGAGGCTGCGATTCCGAGTGGCAGATCTCGAAGGCCAGGTGAGTGTGATG
GAGGACGAGCTCGACAGGCGAGGGGTCGCTCGCCCGATGCCCACAGATGC
CAACGGCATCAACAACAACAACACCGATAGCGATAGTTACAGAACCGGCA
ACGCCAGCTGCACGGCGGGTGCTAACGCTGACGACAAGAGCAACGCTAAC
GCTAACCCTGGTCGGGTGAAGGTGGAGGCAGCAAGGACTGTGACAGCAGC
AGCAGCAGCAGCAGCAACGACTTCACCCAAGTCGAGAGGAGTTGAGGGGG
AAGGAGGGGGCGAGGGTGGGGCGGGGATGGGCACCGACGGTCCCCTGTTG
TCCCCCCGGGGGAGGGGGTACCTGGCGAGGCTGGTGCTGGAGGTCTGCTC
GGAGATCGAGGACAGTAAGAAGGTGAGTGTGATGGAGGACGAGCTCGACA
GGCGAGGGGTCGCTCGCCCGATGCCCACAGATGCCAACGGCATCAACAAC
AACAACACCGATAGCGATAGTTACAGAACCGGCAACGCCAGCTGCACGGC
GGGTGCTAACGCTGACGACAAGAGCAACGCTAACGCTAACCCTGGTCGGG
TGAAGGTGGAGGCAGCAAGGACTGTGACAGCAGCAGCAGCAGCAGCAGCA
ACGACTTCACCCAAGTCGAGAGGAGTTGAGGGGGAAGGAGGGGGCGAGGG
TGGGGCGGGGATGGGCACCGACGGTCCCCTGTTGTCCCCCCGGGGGAGGG
GGTACCTGGCGAGGCTGGTGCTGGAGGTCTGCTCGGAGATCGAGGACAGT
AAGAAGAAGGCGGCTACGGAGGCCAAGGCTAAGGGAGGGGCCAGCATTAG
CACGGTGACTACGGGGGGCGAGGGGAGGATGGCGTCGCGCTCGCGCTCAA
TTCCTCATTCAGAACGGCTGTGCAAGGTGCTGCCGAAGGTCATGGAGACT
GCCATCAGGGGGGTCAAAGACCTAGACGAACAGAAGGCGGCTACGGAGGC
CAAGGCTAAGGGAGGGGCCAGCATTAGCACGGTGACTACGGGGGGCGAGG
GGAGGATGGCGTCGCGCTCGCGCTCAATTCCTCATTCAGAACGGCTGTGC
AAGGTGCTGCCGAAGGTCATGGAGACTGCCATCAGGGGGGTCAAAGACCT
AGACGAACAGGTGTTCGAGCAGATGATGCGAACGGCCTCCGAGCGCAGCA
GCGGGATGACCATGTCCATGTCGTCGCTGTCCTCCCCCTCCCACGGCAGC
CACCTGCCGCTCGGCACCCCCGCTCGCCGCCTCTCGAGCTGCGTCGTGGC
GAGGGACGGAGGCGGGGAGTTCTTCGCCCAGAGCCCCGCCCCTGGCCGGC
CTGCAAGCTTCTTCAGGTGCGTTGTGTTCGAGCAGATGATGCGAACGGCC
TCCGAGCGCAGCAGCGGGATGACCATGTCCATGTCGTCGCTGTCCTCCCC
CTCCCACGGCAGCCACCTGCCGCTCGGCACCCCCGCTCGCCGCCTCTCGA
GCTGCGTCGTGGCGAGGGACGGAGGCGGGGAGTTCTTCGCCCAGAGCCCC
GCCCCTGGCCGGCCTGCAAGCTTCTTCAGGTGCGTT
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