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Homology
BLAST of mRNA_E-fasciculatus_F_contig13423.2569.1 vs. uniprot
Match: D7FMD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD2_ECTSI) HSP 1 Score: 235 bits (599), Expect = 1.080e-70 Identity = 209/255 (81.96%), Postives = 215/255 (84.31%), Query Frame = 1
Query: 10 AHDQAAASRDLEAKLAAERERASKAAAEAASLRQENARIRASXXXXXXXXXXQLNEXXXXAKAKAEGEALRVQLRQALSSKDSSGQSEMLRKKVASLEEAIRAKDRENVTNRSMYDNMKGVSRKIKETLASAQQEVRDRNDLIAKLQARVAELEGGQQAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPTRSLXXXXXXXXXXXXXXXRGASPTMAGRSAMSVVAEASAGGDDGGEASLRNRLMARSE 774
A +AAASRDLEAKLAAERE+ EAASLRQENAR RAS QLNE AKAKAEGEALRVQLRQAL+SKD SGQSEMLRKKVASLEEAIRAKDRENVTNR+MYDNMKGVSRKIKETLASAQQEVR+RNDLI KL ARVAELEGGQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX GASPT AGRSAM+VVAEA AGGDDGGEASLRNRLMARSE
Sbjct: 278 AAQKAAASRDLEAKLAAEREKXXXXXXEAASLRQENARTRASANSTTANVTKQLNEQV--AKAKAEGEALRVQLRQALASKDGSGQSEMLRKKVASLEEAIRAKDRENVTNRTMYDNMKGVSRKIKETLASAQQEVRERNDLITKLHARVAELEGGQPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GASPTTAGRSAMAVVAEAGAGGDDGGEASLRNRLMARSE 528
BLAST of mRNA_E-fasciculatus_F_contig13423.2569.1 vs. uniprot
Match: A0A6H5JK01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK01_9PHAE) HSP 1 Score: 221 bits (564), Expect = 8.570e-67 Identity = 195/253 (77.08%), Postives = 206/253 (81.42%), Query Frame = 1
Query: 22 AAASRDLEAKLAAERERASKAAAEAASLRQENARIRASXXXXXXXXXXQLNEXXXX--AKAKAEGEALRVQLRQALSSKDSSGQSEMLRKKVASLEEAIRAKDRENVTNRSMYDNMKGVSRKIKETLASAQQEVRDRNDLIAKLQARVAELEGGQQAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPTRSLXXXXXXXXXXXXXXXRGASPTMAGRSAMSVVAEASAGGDDGGEASLRNRLMARSE 774
AA SRDLEAKLAAERE+ASKAAAEAASLRQENAR RAS QLNE AKAKAEGEALRVQLRQAL+SKD SGQSEMLR+KVA LEEA + DRENVTNR+M DNMKGVSR+IKETLASAQQEVR+RND IAKL AR AELEGGQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RPTRS+ XXXXXXX GASPT RSAM+VVAEA AGGDDGGEASLRNRLMAR++
Sbjct: 7 AATSRDLEAKLAAEREKASKAAAEAASLRQENARTRASANSNTANVTKQLNEQATLVVAKAKAEGEALRVQLRQALASKDGSGQSEMLRQKVAFLEEAFQ--DRENVTNRTMCDNMKGVSREIKETLASAQQEVRERNDQIAKLHARDAELEGGQPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIA-RPTRSVSLAPASXXXXXXX---GASPTTPERSAMAVVAEAGAGGDDGGEASLRNRLMARTK 253
BLAST of mRNA_E-fasciculatus_F_contig13423.2569.1 vs. uniprot
Match: A0A6H5KRL3_9PHAE (TPR_MLP1_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRL3_9PHAE) HSP 1 Score: 206 bits (524), Expect = 5.690e-57 Identity = 130/159 (81.76%), Postives = 136/159 (85.53%), Query Frame = 1
Query: 10 AHDQAAASRDLEAKLAAERERASKAAAEAASLRQENARIRASXXXXXXXXXXQLNEXXXX--AKAKAEGEALRVQLRQALSSKDSSGQSEMLRKKVASLEEAIRAKDRENVTNRSMYDNMKGVSRKIKETLASAQQEVRDRNDLIAKLQARVAELEGGQ 480
A +AA SRDLEAKLAAERE+ASKAAAEAASLRQENAR RAS QLNE AKAKAEGEALRVQLRQAL+SKD SGQSEMLRKKVASLEEAI+AKDRENVTNR+MYDNMKGVSRKIKETLASAQQEVR+RND IAKL ARVAELEGGQ
Sbjct: 980 AAQKAATSRDLEAKLAAEREKASKAAAEAASLRQENARTRASANSNTANVTKQLNEQATLVVAKAKAEGEALRVQLRQALASKDGSGQSEMLRKKVASLEEAIQAKDRENVTNRTMYDNMKGVSRKIKETLASAQQEVRERNDQIAKLHARVAELEGGQ 1138
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 239.6 |
| Seed ortholog evalue | 1.7e-60 |
| Seed eggNOG ortholog | 2880.D7FMD2 |
| KEGG ko | ko:K09291,ko:K10405,ko:K12472,ko:K20283 |
| KEGG TC | 1.I.1 |
| KEGG Pathway | ko03013,ko04144,ko05200,ko05216,map03013,map04144,map05200,map05216 |
| KEGG Module | M00427 |
| GOs | GO:0000003,GO:0000075,GO:0000278,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005829,GO:0005911,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009506,GO:0009507,GO:0009536,GO:0009791,GO:0009892,GO:0009908,GO:0009909,GO:0009910,GO:0009987,GO:0010467,GO:0010468,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0010965,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016973,GO:0019222,GO:0022402,GO:0022414,GO:0030054,GO:0030071,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031503,GO:0031577,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033233,GO:0033234,GO:0034613,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0046907,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048519,GO:0048523,GO:0048580,GO:0048581,GO:0048608,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0051028,GO:0051093,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051641,GO:0051649,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055044,GO:0060255,GO:0060968,GO:0061458,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071173,GO:0071174,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090567,GO:0099402,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1903320,GO:1903321,GO:1905818,GO:1905819,GO:2000026,GO:2000241,GO:2000242,GO:2000816,GO:2001251 |
| EggNOG free text desc. | spindle assembly checkpoint |
| EggNOG OGs | KOG4674@1,KOG4674@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko03019,ko03036,ko04131,ko04812 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 777 |
| Cds size | 777 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13423.2569.1 >prot_E-fasciculatus_F_contig13423.2569.1 ID=prot_E-fasciculatus_F_contig13423.2569.1|Name=mRNA_E-fasciculatus_F_contig13423.2569.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=259bp
SRRAHDQAAASRDLEAKLAAERERASKAAAEAASLRQENARIRASASSNT
ATATKQLNEQARVAKAKAEGEALRVQLRQALSSKDSSGQSEMLRKKVASL
EEAIRAKDRENVTNRSMYDNMKGVSRKIKETLASAQQEVRDRNDLIAKLQ
ARVAELEGGQQAAPAAAAAATAAGGSEGSTTAAATATATAGGGGAVARPT
RSLSPAPASQQQQQQQQQRGASPTMAGRSAMSVVAEASAGGDDGGEASLR
NRLMARSEY back to topmRNA from alignment at E-fasciculatus_F_contig13423:358..3168- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig13423.2569.1 ID=mRNA_E-fasciculatus_F_contig13423.2569.1|Name=mRNA_E-fasciculatus_F_contig13423.2569.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2811bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13423:358..3168- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCACGACGGGCACATGATCAGGCTGCTGCTAGCCGCGATCTGGAGGCCAA
GCTTGCGGCGGAGAGGGAGAGAGCCTCAAAGGTGTGTATGCACACGCGTG
GAGAAAGAAGGCGCTTGGCCTGTATGTCTTTTGATATGGTCTACTCGCTG
ATTGTGACTTACTTGTTGGTCGTTTTACTTTATTTTTATAGCATCGACCG
CGCTAACCGCCTGACCCCAAGAAAGACAGACGCCAGTCTCGTAGCGCGAT
GAAGGAAACGCGAACAACACGCTTATCGACGATTCATGGTAACTTTTCGA
ATTTCTCCCGGGGGCGGGGGGCGGGGGGCGGGGGTGCGTGCCCGGAAAAA
AATCTGACGTAGACCCAGCACGCAAGTAAACAACTCCATCGACCACAACA
GTCGACGGCATCCATGGGCAAAAGGAAAGGGCGGTTTCCAAAAGAAAAGC
ACGTCTGGAGTACTCGGTACTAACGGTGGCTGGCTGTCTGTCTGTGGGTG
TATTTTCTCCATGTTCCTTGTTTGTGTTTGTTTTGTCTGTGGGTGCTTCG
TTGTCTCTGCAGGCCGCAGCAGAGGCCGCCTCCCTGAGGCAGGAGAACGC
TCGCATTCGCGCCAGTGCCAGCAGCAACACGGCCACCGCAACCAAGCAGC
TCAACGAGCAGGCAAGAGTTGGCACGGACCAAGCTGTGAAAATGGTGTGG
TATTGTCGCCTTGCTGTTTTTGATCGATAGCGTCGGCACGAAACAGTATC
GCCTACGTGACAGCTGTTGGTTGGGCAGCAATTTTGGTAGTTGAACCGCG
AGATTTTTCTTGCTTACCAAGAATGTTGTTTTTTTCTTCAATCTTTGGCG
TGGTCGTTGTTGGTTCTACTGCTGCCGTTGTTGTTGTTGCTGCCAATGGT
TCCAATGGTTGTGTTTCCTTGATGAAATTGTGGCACACAGGCAAGCTGAG
ATAACCAAATCCACGGCATGGAGCCCTCATCTCTGGGTGAGGGAGAGTCC
AGAAGAACAATGATCTATTTCAGACCCTCCGCTCCTACTCTTTTGTTTGT
GTGTCTGTGCTTCCTAAATCTCCATATTCTGACCTCCACGTGGTTGTTGT
TCGAACGATTGATCAGGTCGCCAAGGCTAAGGCGGAAGGGGAGGCTCTGA
GAGTACAGCTGCGGCAGGCGCTCTCCTCCAAGGACAGCTCGGGCCAGGTA
AAAATAACGATTTGACGGCCTCAAAGTTTTTCTATCTTTTGTTACTTTTG
GGGGTTTGGAAACGGTCGAAGGCGTTTTGTGCCGATTTTGCTGGTGCTTT
ACAAAATTTGTCTGGTGTTCTAAAGGTTACGCGTGTTTTGAAGCTGCAGG
CCATGTTGGTTGATAGAATTACCTGTTAAAATCGATTTTGATTTTCTACG
GCGTGCACAAAAGGTGGGTGTGCACGCCAGGTGGCACTTTAGGATACGCT
GTCGGGCATCGTACATGCATGTTGGGCACGAAACGCAGGAGGTGATCGGC
GTACTAAACCGGATTCGTGTTTCGCTTTTCTTCCGCTTGTTTTGTGTCTT
GGTGTCGCGTGTTGAATCTTGATTTTGGCCACTGCCATCGACTCTCGTCT
TCCTCGCCATCGTAATCGTCATGATGGCTATCCTCACCGTCGCCATAATT
ATCCTTCATCGTGGTTATCATGGTCATCTTCCGTCATCACTATCAACATC
ATTGTCGTCAACATCATAATTTTCATCATCGCCATCGTCATCATCATCAT
CGTCGTCATTGTCGTCATTATCATCATGGATTTCCTCTTCCTCGCCACCA
TCATCATAACCAATTTCGTGGTCATGATGATGATCATCATCACTCATCAC
CAACACCATTGTCGTCATTACCGTCCTCACGAGCACCACCAACTTCGTCA
CCATCATTGTCGTCATCATCGCTACCAATCAGTCGGAAATGCTTCGCAAG
AAGGTGGCGTCGTTGGAAGAGGCTATCAGGGCCAAGGACCGCGAGAACGT
GACCAACAGGTCCATGTACGACAACATGAAGGGCGTCAGCCGCAAGATCA
AGGAGGTGAGCGAGTGCATCAAGTGTTGTTGTGGTGCGTATGCATGGAAG
GCTTCGCCAGAGAGAGGGTGACGGGGTTGCAGGAAATTTCTTGTCTACTT
GCACGGGGCATTTTTGGCCGTTTGTACGTACAGCAGTATATCTTGAAAGA
GTCATTTTTCGTACACCTCGTGGGATACATACGTGGATTCCGTCCTAATA
ACCCCATGATAAACTTTTTTGGGAGACTTTGTGAATGGAGCACACAACAT
ATTTTTCGACTGGTGTATCCCTGGCAAGCCACGCTTTCTTTCATGCGCCT
CTCGAAAAATGTCGGCAATGCTTCTTACTATTCCCACCCACCACCTTTCC
CTGTTGGCCCTTTTCCTTACGCAGACTCTCGCCAGCGCCCAGCAGGAGGT
CAGGGACAGGAACGACCTGATCGCCAAGCTCCAGGCACGCGTCGCCGAGC
TCGAGGGAGGGCAGCAGGCGGCGCCGGCAGCGGCAGCGGCGGCGACCGCG
GCCGGCGGCTCGGAGGGCAGCACCACCGCTGCCGCGACAGCTACCGCTAC
CGCTGGGGGAGGAGGTGCCGTTGCGCGCCCTACCCGGTCTCTCTCCCCGG
CCCCTGCATCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGGTGCGTCG
CCTACGATGGCGGGGCGTTCGGCGATGTCGGTGGTGGCCGAGGCTAGTGC
CGGAGGAGATGACGGCGGAGAGGCCTCCCTCAGGAACAGGCTGATGGCGC
GAAGTGAGTAT back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig13423:358..3168- >mRNA_E-fasciculatus_F_contig13423.2569.1 ID=mRNA_E-fasciculatus_F_contig13423.2569.1|Name=mRNA_E-fasciculatus_F_contig13423.2569.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1554bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13423:358..3168- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCACGACGGGCACATGATCAGGCTGCTGCTAGCCGCGATCTGGAGGCCAA
GCTTGCGGCGGAGAGGGAGAGAGCCTCAAAGTCACGACGGGCACATGATC
AGGCTGCTGCTAGCCGCGATCTGGAGGCCAAGCTTGCGGCGGAGAGGGAG
AGAGCCTCAAAGGCCGCAGCAGAGGCCGCCTCCCTGAGGCAGGAGAACGC
TCGCATTCGCGCCAGTGCCAGCAGCAACACGGCCACCGCAACCAAGCAGC
TCAACGAGCAGGCAAGAGCCGCAGCAGAGGCCGCCTCCCTGAGGCAGGAG
AACGCTCGCATTCGCGCCAGTGCCAGCAGCAACACGGCCACCGCAACCAA
GCAGCTCAACGAGCAGGCAAGAGTCGCCAAGGCTAAGGCGGAAGGGGAGG
CTCTGAGAGTACAGCTGCGGCAGGCGCTCTCCTCCAAGGACAGCTCGGGC
CAGGTCGCCAAGGCTAAGGCGGAAGGGGAGGCTCTGAGAGTACAGCTGCG
GCAGGCGCTCTCCTCCAAGGACAGCTCGGGCCAGTCGGAAATGCTTCGCA
AGAAGGTGGCGTCGTTGGAAGAGGCTATCAGGGCCAAGGACCGCGAGAAC
GTGACCAACAGGTCCATGTACGACAACATGAAGGGCGTCAGCCGCAAGAT
CAAGGAGTCGGAAATGCTTCGCAAGAAGGTGGCGTCGTTGGAAGAGGCTA
TCAGGGCCAAGGACCGCGAGAACGTGACCAACAGGTCCATGTACGACAAC
ATGAAGGGCGTCAGCCGCAAGATCAAGGAGACTCTCGCCAGCGCCCAGCA
GGAGGTCAGGGACAGGAACGACCTGATCGCCAAGCTCCAGGCACGCGTCG
CCGAGCTCGAGGGAGGGCAGCAGGCGGCGCCGGCAGCGGCAGCGGCGGCG
ACCGCGGCCGGCGGCTCGGAGGGCAGCACCACCGCTGCCGCGACAGCTAC
CGCTACCGCTGGGGGAGGAGGTGCCGTTGCGCGCCCTACCCGGTCTCTCT
CCCCGGCCCCTGCATCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGGT
GCGTCGCCTACGATGGCGGGGCGTTCGGCGATGTCGGTGGTGGCCGAGGC
TAGTGCCGGAGGAGATGACGGCGGAGAGGCCTCCCTCAGGAACAGGCTGA
TGGCGCGAAGTGAGTATACTCTCGCCAGCGCCCAGCAGGAGGTCAGGGAC
AGGAACGACCTGATCGCCAAGCTCCAGGCACGCGTCGCCGAGCTCGAGGG
AGGGCAGCAGGCGGCGCCGGCAGCGGCAGCGGCGGCGACCGCGGCCGGCG
GCTCGGAGGGCAGCACCACCGCTGCCGCGACAGCTACCGCTACCGCTGGG
GGAGGAGGTGCCGTTGCGCGCCCTACCCGGTCTCTCTCCCCGGCCCCTGC
ATCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGGTGCGTCGCCTACGA
TGGCGGGGCGTTCGGCGATGTCGGTGGTGGCCGAGGCTAGTGCCGGAGGA
GATGACGGCGGAGAGGCCTCCCTCAGGAACAGGCTGATGGCGCGAAGTGA
GTAT back to top
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