mRNA_E-fasciculatus_F_contig13422.2568.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13422.2568.1 vs. uniprot
Match: A0A6H5JII0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII0_9PHAE) HSP 1 Score: 283 bits (724), Expect = 2.530e-85 Identity = 288/519 (55.49%), Postives = 303/519 (58.38%), Query Frame = 1
Query: 109 MKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRRRKFESEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGDALDSVGISRSGGRGDAAAA---------------------VAANPGRRVAGSKTREESDRPPPWGGGSPSATSTSPETATATRSPARRPPVLQAKEVRPTSPPPQPQMRHQ------------ERWGKRGRGEKRGSSCSDDNSS--SISRGSAESPSWSRGVPRKRRFPSKGWARAAETGEGERLPASPPGDSRGRAWQTSRRDEWPSGGVS-----GGGETGREXXXXXXXXXXXXXXXXXXXAVAPFCSSSAAAVSCYNRGPAEDLRPAADGSRPLSPKVVARVPRSRGEAXXXXXXXXXXXXXXXXYVDHXXXLPERQASRGRGDVETTPPYTSTRPXXXXXXXXXXXXXXXXXXXXXXXSPAVATAVGEAAVAQGVRRCRPPYPQQEVHDDMDHTAGRVVSVSPLKKAVTGDGVDEEGPDGRG 1545
MKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRRRKF+SEAXXXXXXXXXXXXXXXXXXX YGDAL S G+SRS +A P RR+ GSK A RPPVL+ +E TS QPQ E W K GRGEKRGSSCSDD SS S S GSAESPSWSRGVPRKRRFPSKGWARAA G ER PASP GD+ GR WQTS +E SGGV GG E GRE XXXXXXXXXXX +++AA VSCYN PAEDLRP A GSRP SPK VARVPR R E XXXXXXX VD XX XXXXXXXXXXXXXXXXXXXXXX SPA AV AV Q RRCRP YP+QEV DDMD+TAGRVVSVSPLKKAVT +G DEEGPD +G
Sbjct: 1 MKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRRRKFDSEAXXXXXXXXXXXXXXXXXXXSLKDKERNRGGFNKCGGGGGRYGDALGSSGVSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATKPVRRIQGSKRXXXXXXXXXXXXXXXXX-----XXXXXXXXXAGRPPVLKTEEAPSTS---QPQXXXXXXXXXXXXXXXXEHWRKPGRGEKRGSSCSDDRSSTSSTSGGSAESPSWSRGVPRKRRFPSKGWARAAGRGGDERAPASPSGDTCGRTWQTSGGEERASGGVGVGACGGGREVGRESSRRNGSSXXXXXXXXXXXXXXXXXAAAAAPVSCYNNVPAEDLRPTAGGSRPYSPKDVARVPR-REEGAXXXXXXXRGVSQRNQSVDRHXXX----XXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPA---AVAGKAVEQAGRRCRPSYPKQEVRDDMDYTAGRVVSVSPLKKAVTREGGDEEGPDHQG 503
BLAST of mRNA_E-fasciculatus_F_contig13422.2568.1 vs. uniprot
Match: A0A6H5L009_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L009_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 7.650e-14 Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1
Query: 79 LRKSCDYCARMKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRRRK 237
LRKSCDYC R+KRACDG +PC+LC+RR K C R R+KSGPAKG KYAPRR++
Sbjct: 10 LRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTKYAPRRKR 62
BLAST of mRNA_E-fasciculatus_F_contig13422.2568.1 vs. uniprot
Match: D7FPF9_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF9_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 7.690e-14 Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1
Query: 79 LRKSCDYCARMKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRRRK 237
LRKSCDYC R+KRACDG +PC+LC+RR K C R R+KSGPAKG KYAPRR++
Sbjct: 18 LRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTKYAPRRKR 70
BLAST of mRNA_E-fasciculatus_F_contig13422.2568.1 vs. uniprot
Match: D8LKM5_ECTSI (Zinc finger transcriptional regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM5_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 4.800e-12 Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1
Query: 79 LRKSCDYCARMKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRR 231
LRKSCDYC RMKR C GG+PCALC+RR K C R ++++SGPAKG KY R+
Sbjct: 23 LRKSCDYCVRMKRGCSGGTPCALCNRRNKNCIRSIKKRSGPAKGTKYCKRK 73
BLAST of mRNA_E-fasciculatus_F_contig13422.2568.1 vs. uniprot
Match: A0A6H5L7F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F3_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 1.930e-11 Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 79 LRKSCDYCARMKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRRRKFES 246
LRKSCD C R+KRACDG SPC LC RR + C R ++RKSGPAKG KY RR + E+
Sbjct: 34 LRKSCDLCVRLKRACDGQSPCQLCLRRRETCTRSVKRKSGPAKGTKYTTRRVRMEA 89
BLAST of mRNA_E-fasciculatus_F_contig13422.2568.1 vs. uniprot
Match: D8LPZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ9_ECTSI) HSP 1 Score: 77.0 bits (188), Expect = 4.760e-11 Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 79 LRKSCDYCARMKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRRRKFES 246
LRKSCD C R+KRACDG +PC LC RR + C R ++RKSGPAKG KY RR + E+
Sbjct: 62 LRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSRMEA 117 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13422.2568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13422.2568.1 >prot_E-fasciculatus_F_contig13422.2568.1 ID=prot_E-fasciculatus_F_contig13422.2568.1|Name=mRNA_E-fasciculatus_F_contig13422.2568.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=568bp QGKSGGEEHGHEKQQQQQQQQQQQPGLRKSCDYCARMKRACDGGSPCALCback to top mRNA from alignment at E-fasciculatus_F_contig13422:464..2669- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13422.2568.1 ID=mRNA_E-fasciculatus_F_contig13422.2568.1|Name=mRNA_E-fasciculatus_F_contig13422.2568.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2206bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13422:464..2669- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13422:464..2669- >mRNA_E-fasciculatus_F_contig13422.2568.1 ID=mRNA_E-fasciculatus_F_contig13422.2568.1|Name=mRNA_E-fasciculatus_F_contig13422.2568.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3408bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13422:464..2669- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |