mRNA_E-fasciculatus_F_contig13420.2567.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13420.2567.1
Unique NamemRNA_E-fasciculatus_F_contig13420.2567.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13420.2567.1 vs. uniprot
Match: D7FI88_ECTSI (Similar to Pappalysin-2 (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI88_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 1.100e-114
Identity = 166/206 (80.58%), Postives = 179/206 (86.89%), Query Frame = 1 
Query:    1 MVDNCSDSLDIGDGWCDEGNNNELCGYDGGDCCECTCESVRDDDFDSCSSEYTFFDCKDPSASCFGEGTTGSDDFSFHDDNDDDSMSYEFVTWDETEILPTVTDAVEVGTKTEVGVSATAYDVRPGSSSGDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFSFAEPQNIVDIQVAFWKDNERVRTLEVRAS 618
            MV+NC     IG+GWCD  NN E CGYDGGDCC CTC+S  DDD+ SCSSEY +FDC+DP+ASCFGEGTTGSDDFSFHDD     MSYEF++W+ETE LPTV DAVEVGTKTEVGVSATA+DVRPGSS  DVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEF+FAEPQNIVDIQVAFW DNERV TLEV  +
Sbjct:   22 MVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDDY-SCSSEYGYFDCQDPTASCFGEGTTGSDDFSFHDDYQ--PMSYEFLSWEETESLPTVVDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLEVHVN 224
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BLAST of mRNA_E-fasciculatus_F_contig13420.2567.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 338 bits (866), Expect = 4.780e-109
Identity = 166/206 (80.58%), Postives = 179/206 (86.89%), Query Frame = 1 
Query:    1 MVDNCSDSLDIGDGWCDEGNNNELCGYDGGDCCECTCESVRDDDFDSCSSEYTFFDCKDPSASCFGEGTTGSDDFSFHDDNDDDSMSYEFVTWDETEILPTVTDAVEVGTKTEVGVSATAYDVRPGSSSGDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFSFAEPQNIVDIQVAFWKDNERVRTLEVRAS 618
            MV+NC     IG+GWCD  NN E CGYDGGDCC CTC+S  DDD+ SCSSEY +FDC+DPSASCFGEGTTGSDDFSFHDD     MSYEFV+W+ET+ LPTV DAVEVGTKTEVGVSATA+D+RPGSS GDVGCGEVGGLGCTATNTRDGI SDIESRWSCATSLVPDEGPCQIEF+FAEPQNIVDIQVAFW DNERV TLEV  +
Sbjct:  483 MVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDDY-SCSSEYGYFDCQDPSASCFGEGTTGSDDFSFHDDYQ--PMSYEFVSWEETDSLPTVVDAVEVGTKTEVGVSATAHDLRPGSSGGDVGCGEVGGLGCTATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLEVHVN 685
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BLAST of mRNA_E-fasciculatus_F_contig13420.2567.1 vs. uniprot
Match: D7FL19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL19_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 9.420e-106
Identity = 159/213 (74.65%), Postives = 175/213 (82.16%), Query Frame = 1 
Query:    1 MVDNCSDSLDIGDGWCDEGNNNELCGYDGGDCCECTCESVRDDDFDSCSSEYTFFDCKDPSASCFGEGTTGSDDFSFHDDNDDDSMSYEFVTWDETEILPTVTDAVEVGTKTEVGVSATAYDVRPGSSSGDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFSFAEPQNIVDIQVAFWKDNERVRTLEVRASPSKSKNT 639
            M+DNC     +G+GWCDE NNNELC YDGGDCCECTCES  +DD+ +CSSE+  F+CKDP+ASCFGE TTGSDDFS     DD  MSYEFV W+ETE LPTV  AVEVGTKTEVGVS+TA+DVRPG    D GCGEVGGLGCTA NTRDGI S+IESRWSCAT LV DEGPCQIEF+FAEPQ IVDIQVAFWK NER RTLEVRA+PS+ K T
Sbjct:    1 MIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDY-TCSSEHGIFNCKDPNASCFGEETTGSDDFS----TDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVRATPSRLKIT 204
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BLAST of mRNA_E-fasciculatus_F_contig13420.2567.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 5.040e-102
Identity = 158/211 (74.88%), Postives = 174/211 (82.46%), Query Frame = 1 
Query:    1 MVDNCSDSLDIGDGWCDEGNNNELCGYDGGDCCECTCESVRDDDFDSCSSEYTFFDCKDPSASCFGEGTTGSDDFSFHDDNDDDSMSYEFVTWDETEILPTVTDAVEVGTKTEVGVSATAYDVRPGSSSGDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFSFAEPQNIVDIQVAFWKDNERVRTLEVRASPSKSK 633
            M +NC     IG+GWCD  NN E CGYDGGDCC CTC+S  DDD+  CSSEY  FDC+DP+ASCFGE +TGSDD+S     DD+ MSYEFV W+ETE LPTV  AVEVGTKTEVGVSATA+DVR G SSGDVGCGEVGGLGCTATNTRDGI S+IESRWSCAT LV DEGPCQIEF+FAEPQ I+DIQVAFWK NER RTLEVRA+PS+ K
Sbjct:  163 MFENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDY-LCSSEYGSFDCQDPNASCFGEESTGSDDYS----TDDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVRATPSRLK 368
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BLAST of mRNA_E-fasciculatus_F_contig13420.2567.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 1.570e-101
Identity = 157/203 (77.34%), Postives = 167/203 (82.27%), Query Frame = 1 
Query:    1 MVDNCSDSLDIGDGWCDEGNNNELCGYDGGDCCECTCESVRDDDFDSCSSEYTFFDCKDPSASCFGEGTTGSDDFSFHDDNDDDSMSYEFVTWDETEILPTVTDAVEVGTKTEVGVSATAYDVRPGSSSGDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFSFAEPQNIVDIQVAFWKDNERVRTLEV 609
            MV+NC     IG+GWCD  NN E CGYDGGDCC CTCES  DDD+ SCSSEY  FDCKDP+ASCFGE  TGSDDFS     DD  MSYEFV W+ETE LPTV  AVEVGTKTEVGVS+TA+DVRPG SSGD GCGEVGGLGCTATNTRDGI S+IESRWSCAT LV DEGPCQIEF+FAEPQ I+DIQVAFWK NER RTLEV
Sbjct:  263 MVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCESPYDDDY-SCSSEYGSFDCKDPNASCFGEEPTGSDDFS----TDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGMSSGDAGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEV 460
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BLAST of mRNA_E-fasciculatus_F_contig13420.2567.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 6.670e-99
Identity = 158/211 (74.88%), Postives = 174/211 (82.46%), Query Frame = 1 
Query:    1 MVDNCSDSLDIGDGWCDEGNNNELCGYDGGDCCECTCESVRDDDFDSCSSEYTFFDCKDPSASCFGEGTTGSDDFSFHDDNDDDSMSYEFVTWDETEILPTVTDAVEVGTKTEVGVSATAYDVRPGSSSGDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFSFAEPQNIVDIQVAFWKDNERVRTLEVRASPSKSK 633
            M +NC     IG+GWCD  NN E CGYDGGDCC CTC+S  DDD+  CSSEY  FDC+DP+ASCFGE +TGSDD+S     DD+ MSYEFV W+ETE LPTV  AVEVGTKTEVGVSATA+DVR G SSGDVGCGEVGGLGCTATNTRDGI S+IESRWSCAT LV DEGPCQIEF+FAEPQ I+DIQVAFWK NER RTLEVRA+PS+ K
Sbjct:  525 MFENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDY-LCSSEYGSFDCQDPNASCFGEESTGSDDYS----TDDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVRATPSRLK 730
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BLAST of mRNA_E-fasciculatus_F_contig13420.2567.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 1.700e-97
Identity = 153/203 (75.37%), Postives = 167/203 (82.27%), Query Frame = 1 
Query:    1 MVDNCSDSLDIGDGWCDEGNNNELCGYDGGDCCECTCESVRDDDFDSCSSEYTFFDCKDPSASCFGEGTTGSDDFSFHDDNDDDSMSYEFVTWDETEILPTVTDAVEVGTKTEVGVSATAYDVRPGSSSGDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFSFAEPQNIVDIQVAFWKDNERVRTLEV 609
            M+DNC     +G+GWCDE NNNELC YDGGDCCECTCES  +DD+ +CSSE+  F+CKDP+ASCFGE TTGSDDFS     DD  MSYEFV W+ETE LPTV  AVEVGTKTEVGVS+TA+DVRPG    D GCGEVGGLGCTA NTRDGI S+IESRWSCAT LV DEGPCQIEF+FAEPQ IVDIQVAFWK NER RTLEV
Sbjct:  240 MIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDY-TCSSEHGTFNCKDPNASCFGEETTGSDDFS----TDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEV 433
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BLAST of mRNA_E-fasciculatus_F_contig13420.2567.1 vs. uniprot
Match: D7FI78_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI78_ECTSI)

HSP 1 Score: 293 bits (749), Expect = 1.780e-97
Identity = 148/202 (73.27%), Postives = 164/202 (81.19%), Query Frame = 1 
Query:    1 MVDNCSDSLDIGDGWCDEGNNNELCGYDGGDCCECTCESVRDDDFDSCSSEYTFFDCKDPSASCFGEGTTG-SDDFSFHDDNDDDSMSYEFVTWDETEILPTVTDAVEVGTKTEVGVSATAYDVRPGSSSGDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFSFAEPQNIVDIQVAFWKDNERVRTL 603
            M++NC D+ DIGDG+C+E  +   CGYDGG+CC CTC+S   DD  SC   Y   DC+DPSASCFGEGTTG SDDF F DD  D SMSY+FV W+ETE LPTVTDAVE+G +TEV VS TA+D R GSSSG+VGCGEVGGLGCTATNTRDGIVSDIES WSCAT LVPDEGPC I F+FAEPQNIVDIQVAFW DNERV TL
Sbjct:   27 MLENCEDAADIGDGYCNEDVDTPECGYDGGNCCSCTCQSAPGDDIFSCRGGYRSIDCQDPSASCFGEGTTGGSDDFIFGDD--DQSMSYQFVNWEETESLPTVTDAVELGAETEVSVSPTAHDGRSGSSSGEVGCGEVGGLGCTATNTRDGIVSDIESTWSCATHLVPDEGPCPIMFTFAEPQNIVDIQVAFWNDNERVSTL 226
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BLAST of mRNA_E-fasciculatus_F_contig13420.2567.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 1.840e-92
Identity = 154/209 (73.68%), Postives = 166/209 (79.43%), Query Frame = 1 
Query:    1 MVDNCSDSLDIGDGWCDEGN--NNELCGYDGGDCCECTCESVRD-DDFDSCSSEYTFFDCKDPSASCFGEGTTGSDDFSFHDDNDDDSMSYEFVTWDETEILPTVTDAVEVGTKTEVGVSATAYDVRPGSSSGDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFSFAEPQNIVDIQVAFWKDNERVRTLEVRAS 618
            M  NC   +DIG+GW          + GYDGGDCC CTC++  D DD  SCSSEY   DCKDP+ASCFGEGTTGSDDF+FHDD      SYEFV W+ETE LPTV DAVEVGTKTEVGVSATA+DVRP SSS DVGCG+VGGLGCTATNTRDGIVSDIESRWSCAT LVPDEG CQIEFSFAEPQN+VDIQVAFWK NER RTL V  +
Sbjct:  353 MFVNCEYPVDIGNGWLRWRRLLRVHMRGYDGGDCCSCTCQNAWDWDDDYSCSSEYNSLDCKDPTASCFGEGTTGSDDFTFHDDYQ--PTSYEFVHWEETESLPTVIDAVEVGTKTEVGVSATAHDVRPRSSSDDVGCGQVGGLGCTATNTRDGIVSDIESRWSCATILVPDEGACQIEFSFAEPQNVVDIQVAFWKGNERTRTLWVHVN 559
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BLAST of mRNA_E-fasciculatus_F_contig13420.2567.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 2.720e-91
Identity = 146/204 (71.57%), Postives = 159/204 (77.94%), Query Frame = 1 
Query:    1 MVDNCSDSLDIGDGWCDEGNNNELCGYDGGDCCECTCESVRDDDFDSCSSEYTFFDCKDPSASCFGEGTT-GSDDFSFHDDNDDDSMSYEFVTWDETEILPTVTDAVEVGTKTEVGVSATAYDVRPGSSSGDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFSFAEPQNIVDIQVAFWKDNERVRTLEV 609
            M DNC     IGDGWCD  NN E CGYDGGDCC CTCESV DDD+ +C  E  FFDCKDPSA+CFGE T  G+ D S    +D D+  YEFV W++TE LPTV DAVEVGTKTEV VSATA+DVR G SSG+VGCGE GG GC A N RDGI ++IESRWSCA  L+ DEGPCQIEFSFAEPQNIVDIQVAFWK NERVRTLEV
Sbjct:   51 MFDNCGYVSGIGDGWCDSNNNKEACGYDGGDCCSCTCESVWDDDY-TCG-EDAFFDCKDPSAACFGEETAMGNGDDSTGRSSDPDT-EYEFVPWEQTEPLPTVDDAVEVGTKTEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEV 251
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13420.2567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI88_ECTSI1.100e-11480.58Similar to Pappalysin-2 (Pregnancy-associated plas... [more]
A0A6H5JM92_9PHAE4.780e-10980.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL19_ECTSI9.420e-10674.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB04_9PHAE5.040e-10274.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F4_ECTSI1.570e-10177.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXR2_9PHAE6.670e-9974.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4F9_ECTSI1.700e-9775.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI78_ECTSI1.780e-9773.27LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FI87_ECTSI1.840e-9273.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S3_ECTSI2.720e-9171.57LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13420contigE-fasciculatus_F_contig13420:1486..3379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog2880.D7FL48
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_003700.1
Exons2
Model size648
Cds size648
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927843.0624814-CDS-E-fasciculatus_F_contig13420:1485..15611622927843.0624814-CDS-E-fasciculatus_F_contig13420:1485..1561Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13420 1486..1561 +
1695995719.1013145-CDS-E-fasciculatus_F_contig13420:1485..15611695995719.1013145-CDS-E-fasciculatus_F_contig13420:1485..1561Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13420 1486..1561 +
1622927843.07322-CDS-E-fasciculatus_F_contig13420:2807..33791622927843.07322-CDS-E-fasciculatus_F_contig13420:2807..3379Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13420 2808..3379 +
1695995719.1123674-CDS-E-fasciculatus_F_contig13420:2807..33791695995719.1123674-CDS-E-fasciculatus_F_contig13420:2807..3379Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13420 2808..3379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13420.2567.1prot_E-fasciculatus_F_contig13420.2567.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13420 1486..3379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13420.2567.1

>prot_E-fasciculatus_F_contig13420.2567.1 ID=prot_E-fasciculatus_F_contig13420.2567.1|Name=mRNA_E-fasciculatus_F_contig13420.2567.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=216bp
MVDNCSDSLDIGDGWCDEGNNNELCGYDGGDCCECTCESVRDDDFDSCSS
EYTFFDCKDPSASCFGEGTTGSDDFSFHDDNDDDSMSYEFVTWDETEILP
TVTDAVEVGTKTEVGVSATAYDVRPGSSSGDVGCGEVGGLGCTATNTRDG
IVSDIESRWSCATSLVPDEGPCQIEFSFAEPQNIVDIQVAFWKDNERVRT
LEVRASPSKSKNTTF*
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mRNA from alignment at E-fasciculatus_F_contig13420:1486..3379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13420.2567.1 ID=mRNA_E-fasciculatus_F_contig13420.2567.1|Name=mRNA_E-fasciculatus_F_contig13420.2567.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1894bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13420:1486..3379+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTCGACAACTGCAGTGACTCATTGGACATAGGAGACGGCTGGTGTGA
TGAAGGAAACAACAACGAGTTGTGCGGTAGGTTTCTGTCATACCACGTGT
TGCCTAGTGCCTAGTTTTTCACCGTATAGGCCTGGATGGCCTTTCAACCA
AACACGCACGGGAAACACACAACCAACATCGTTCACAATAACAGCGTGTG
CCTTGCTCTCGACGAAGAATCTCAACAAACCCCTCCCCAATGCCCACGGA
ATCTTCTTCGCCGGCTGTCCGTCCGTTACGGCACCCAACCCCTTCCTGTA
CACACAGATTCCAGGGAGTGGGGGTCACAAGAAGTACTTTTTGGTCGTGG
GGTCTAGGGGCATTTTGCGTGGCAGTGTCTTCGGCCGTCGACAGCAGCAA
CAGCACCGCAGATGCACGCACACCGTGGTGAAACCAGATTCCATCCTGGC
CCGACTACTGTATAAAAAAAACAATTACACGACGACGAAGAGAACGTACA
AATCAAACGGTTCGGGGTGCGGCAAGCGCGACGCGTCGCACCGAGCTGTT
TACACATTTTCTTCCACCATATTTCCTTAATCCCGAGCGATACTTGAACA
AAACAAAGCTCGGTGTATCTGTTAGGCGTTGTTATAGGTTGTAACGGTAG
GTGGTGTTTCGTTCCTGACCTTGACGACGTGAGCACAGTACGACATCACC
TGGCATCTTTGCCGACACGTCACAAATCCGTTGTACGCGAAAGGTCTGTC
TGCAAGCGTCTGAGCCCTCGGTCCGACTAGGAAAGAACGTCTTCCACATT
TCTTGGGTTTTTCTCCCCTTCATCTCCGCTTCCTTCGATTTCGGGCCCTA
CAGTAGACACTGCTGCCAATGTACCAGCATCTTCAGGGTTTGGGCTGGAA
GAGCACCTCTTGCTCGTCTCTCGCTTACAACTGTTTCGTCGTCCAGTAGC
ATAGTATTTTGAAGCAGTTCTGCTGCCTTCATTTCAATTCACGCTCTTGT
TTCGTGTGGTTGTGGAGACAACAGCGTTAGGCACACTCCTGCTCTCTGCT
TGCCGTCGATTGCCTTCAAGTAGATAGGCATTCAGAGACAATACCAACAC
CACATGGGGCTCAGCGGTGCGAGGTACACGGTACGAACCACAAGCGCCGT
GCTTGTCCCGTATCATACTTTGAATATTCTTGCGAATCTGGCGACTTTTG
TGTCCATTGTCTCTCTTTCTTTTCGGCCATAACCCGTTCATTGGTCTCGC
TGGCTAGGAACTTACTCAGCTGTGATGTTTGAGCACCTACTATCTGTCTC
TCCCTCTGTGGCCATCTCGTAGGCTACGACGGCGGCGACTGCTGCGAGTG
CACATGCGAAAGCGTTCGGGACGACGACTTCGACTCCTGCAGCAGCGAGT
ACACCTTCTTCGACTGCAAAGACCCCAGCGCCTCCTGCTTCGGAGAAGGA
ACTACGGGTAGCGATGACTTCAGCTTCCACGACGACAACGACGACGATTC
CATGTCGTACGAGTTCGTCACCTGGGACGAGACAGAGATCCTGCCGACGG
TCACCGATGCTGTCGAGGTGGGCACCAAGACCGAGGTTGGCGTATCAGCC
ACCGCCTACGACGTGCGGCCCGGCAGCAGCAGCGGCGACGTCGGGTGCGG
AGAGGTCGGGGGCCTTGGCTGCACGGCGACCAACACCCGTGATGGTATCG
TCTCCGACATCGAGTCGAGGTGGTCGTGCGCCACGAGCCTCGTGCCTGAC
GAAGGGCCTTGCCAAATCGAGTTTTCCTTTGCCGAACCCCAGAACATCGT
GGACATCCAGGTCGCCTTCTGGAAGGACAACGAGCGCGTCCGCACTCTAG
AGGTGAGGGCGTCACCAAGCAAATCGAAAAACACCACGTTCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13420:1486..3379+

>mRNA_E-fasciculatus_F_contig13420.2567.1 ID=mRNA_E-fasciculatus_F_contig13420.2567.1|Name=mRNA_E-fasciculatus_F_contig13420.2567.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1296bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13420:1486..3379+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTCGACAACTGCAGTGACTCATTGGACATAGGAGACGGCTGGTGTGA
TGAAGGAAACAACAACGAGTTGTGCGATGGTCGACAACTGCAGTGACTCA
TTGGACATAGGAGACGGCTGGTGTGATGAAGGAAACAACAACGAGTTGTG
CGGCTACGACGGCGGCGACTGCTGCGAGTGCACATGCGAAAGCGTTCGGG
ACGACGACTTCGACTCCTGCAGCAGCGAGTACACCTTCTTCGACTGCAAA
GACCCCAGCGCCTCCTGCTTCGGAGAAGGAACTACGGGTAGCGATGACTT
CAGCTTCCACGACGACAACGACGACGATTCCATGTCGTACGAGTTCGTCA
CCTGGGACGAGACAGAGATCCTGCCGACGGTCACCGATGCTGTCGAGGTG
GGCACCAAGACCGAGGTTGGCGTATCAGCCACCGCCTACGACGTGCGGCC
CGGCAGCAGCAGCGGCGACGTCGGGTGCGGAGAGGTCGGGGGCCTTGGCT
GCACGGCGACCAACACCCGTGATGGTATCGTCTCCGACATCGAGTCGAGG
TGGTCGTGCGCCACGAGCCTCGTGCCTGACGAAGGGCCTTGCCAAATCGA
GTTTTCCTTTGCCGAACCCCAGAACATCGTGGACATCCAGGTCGCCTTCT
GGAAGGACAACGAGCGCGTCCGCACTCTAGAGGTGAGGGCGTCACCAAGC
AAATCGAAAAACACCACGTTCTGAGCTACGACGGCGGCGACTGCTGCGAG
TGCACATGCGAAAGCGTTCGGGACGACGACTTCGACTCCTGCAGCAGCGA
GTACACCTTCTTCGACTGCAAAGACCCCAGCGCCTCCTGCTTCGGAGAAG
GAACTACGGGTAGCGATGACTTCAGCTTCCACGACGACAACGACGACGAT
TCCATGTCGTACGAGTTCGTCACCTGGGACGAGACAGAGATCCTGCCGAC
GGTCACCGATGCTGTCGAGGTGGGCACCAAGACCGAGGTTGGCGTATCAG
CCACCGCCTACGACGTGCGGCCCGGCAGCAGCAGCGGCGACGTCGGGTGC
GGAGAGGTCGGGGGCCTTGGCTGCACGGCGACCAACACCCGTGATGGTAT
CGTCTCCGACATCGAGTCGAGGTGGTCGTGCGCCACGAGCCTCGTGCCTG
ACGAAGGGCCTTGCCAAATCGAGTTTTCCTTTGCCGAACCCCAGAACATC
GTGGACATCCAGGTCGCCTTCTGGAAGGACAACGAGCGCGTCCGCACTCT
AGAGGTGAGGGCGTCACCAAGCAAATCGAAAAACACCACGTTCTGA
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