mRNA_E-fasciculatus_F_contig13416.2561.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13416.2561.1
Unique NamemRNA_E-fasciculatus_F_contig13416.2561.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13416.2561.1 vs. uniprot
Match: D8LKP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP8_ECTSI)

HSP 1 Score: 558 bits (1437), Expect = 3.720e-182
Identity = 399/491 (81.26%), Postives = 408/491 (83.10%), Query Frame = 1 
Query:    1 RWQMVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKRLASQGISVKGSGLMKANMAKDLAANGTLSHSMNILKSADKEKLQQXXXXXXXXXXXXXXXXXXKRQIRKKRAPAGFDDNASESDCSSXXXXXXXXXXXXXXXXXXXXX-YPNQQQQRMAFPLSPPPPYDVGEAADFTHDGRPRVPPAGPPAAAARGNGRPTATNSGGTNDGKHFAAGESSXXXSGITRGANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDATDKAGRPPAGGA-----REDQLMRSIFGLLGGKPAQRGGFEPARRHHVYDRDGGCGAGAFAGARIPAG--NNKRPSEGFLHLDSVAFRRNGSNNAALATGEGAVMDEASXXXXXXXXXXXXXXXXXXSVPQGRVLED 1449
            RWQMVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAED+KLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKRLASQGISVKGSGLMKANMAKDLAANGTLSHSMNILKSADKEKLQQ                  KRQ+RKKRAPAGFD NASESDC  XXXXXXXXXXXXXXXXXXX   YPNQQQ  MAFPLS PPP+DVGEAADFTHDGRP   PA            PTA +S GTN+ KHFAAGESS   SGITRGAN    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     REDQLMRSIFGLLGGKPAQRGGFEPARRHH+YDRDGGCGAGAFA +R+PA   NNKRPSEGFL+LDSV F RNGSNNAA ATGEGAVMDEASXXXXXXXXXXXXXXX   SVPQGRVLED
Sbjct:  122 RWQMVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDMKLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKRLASQGISVKGSGLMKANMAKDLAANGTLSHSMNILKSADKEKLQQQLQRQQRSGKESA-----KRQMRKKRAPAGFDHNASESDCXXXXXXXXXXXXXXXXXXXXXMEVYPNQQQP-MAFPLSAPPPFDVGEAADFTHDGRPSAGPAAXXXXXXXXXXXPTAASSDGTNNSKHFAAGESSFGGSGITRGANDVGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREDQLMRSIFGLLGGKPAQRGGFEPARRHHLYDRDGGCGAGAFAVSRVPAAGNNNKRPSEGFLNLDSVTFSRNGSNNAAPATGEGAVMDEASXXXXXXXXXXXXXXX---SVPQGRVLED 603
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BLAST of mRNA_E-fasciculatus_F_contig13416.2561.1 vs. uniprot
Match: A0A6H5KU69_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU69_9PHAE)

HSP 1 Score: 484 bits (1247), Expect = 1.280e-155
Identity = 375/493 (76.06%), Postives = 383/493 (77.69%), Query Frame = 1 
Query:   10 MVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKRLASQGISVKGSGLMKANMAKDLAANGTLSHSMNILKSADKEKLQQXXXXXXXXXXXXXXXXXXKRQIR----KKRAPAGFDDNASESDCSSXXXXXXXXXXXXXXXXXXXXX--YPNQQQQRMAFPLSPPPPYDVGEAADFTHDGRPRVPPAGPPAAAARGNGRPTATNSGGTNDGKHFAAGESSXXXSGITRGANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDATDKAGRPPAGGA------REDQLMRSIFGLLGGKPAQRGGFEPARRHHVYDRDGGCGAGAFAGARIPAGNNKR--PSEGFLHLDSVAFRRNGSNNAALATGEGAVMDEASXXXXXXXXXXXXXXXXXXSVPQGRVLE 1446
            MVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKRLASQGISVKGSGLMKANMAKDLAANGTLSHSMNILKSADKEKL Q                   R +R    KKRAPAGFD NASESDC+ XXXXXXXXXXXXXXXXXXXX   YPNQQQ  MAFPLS PPP+DVGEAADFTH+GR    PA       RG  RP   N                XXX  ITRGAN   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                      REDQLMRSIFGLLGGKPAQRGGFEPARRH++Y RDGG G GAFAG+RIPA  NK   PSEGFL+LDSVAF RNGSNNA  ATGEGAVMDEAS XXXXXXXXXXXX      VPQGRVLE
Sbjct:    1 MVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKRLASQGISVKGSGLMKANMAKDLAANGTLSHSMNILKSADKEKLLQQQQRRQQGSGKESAKRLELRGVRVEIGKKRAPAGFDHNASESDCNXXXXXXXXXXXXXXXXXXXXXMEVYPNQQQP-MAFPLSAPPPFDVGEAADFTHNGRQSAGPAAXXXXXXRGICRPIVANXXXXXXXXXXXXXXXXXXXXXITRGANDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREDQLMRSIFGLLGGKPAQRGGFEPARRHYLYGRDGGGGTGAFAGSRIPAAGNKNKWPSEGFLNLDSVAFSRNGSNNAP-ATGEGAVMDEASAXXXXXXXXXXXX------VPQGRVLE 485
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BLAST of mRNA_E-fasciculatus_F_contig13416.2561.1 vs. uniprot
Match: F0YHL4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHL4_AURAN)

HSP 1 Score: 171 bits (434), Expect = 7.600e-48
Identity = 81/113 (71.68%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:    1 RWQ-MVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKRL 336
            RW+ +V+   VKGPW PEEDSLL+ LV+++G K+W+LIA+  PGR+GKQCRERWLNHLDTRV KS WT  ED  L EAQ R+GNKWSEI++LLPGRAENAVKNRFNS+ITKRL
Sbjct:   47 RWEAVVRHTAVKGPWLPEEDSLLRQLVNKFGPKRWALIASHIPGRAGKQCRERWLNHLDTRVIKSDWTPDEDAVLLEAQQRVGNKWSEIARLLPGRAENAVKNRFNSLITKRL 159
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BLAST of mRNA_E-fasciculatus_F_contig13416.2561.1 vs. uniprot
Match: A0A835Z962_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z962_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.220e-45
Identity = 75/111 (67.57%), Postives = 91/111 (81.98%), Query Frame = 1 
Query:    1 RWQMVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKR 333
            RWQ++   PVKGPW+ EED +L+ LV +YG KKWS +AT  PGR+GKQCRERWLNHLD RV K++WT  ED  L +AQ  LGN+WS+IS++LPGRAENAVKNRFNS+ITKR
Sbjct:   51 RWQIICDLPVKGPWASEEDDVLRALVKQYGNKKWSHVATGLPGRTGKQCRERWLNHLDIRVMKTSWTPEEDELLFDAQRELGNQWSKISRMLPGRAENAVKNRFNSLITKR 161
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13416.2561.1 vs. uniprot
Match: D7FZ02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ02_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 8.460e-43
Identity = 78/113 (69.03%), Postives = 89/113 (78.76%), Query Frame = 1 
Query:    1 RWQMVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKRLA 339
            RW  VK  PVKGPWS EED  LK LVDE+G KKW+L+A  FPGRSGKQCRERW NH+D RVKK  W+  ED  LCEAQ +LGNKWSE+SK+L GR+ENA+KNRFNS+  K LA
Sbjct:   55 RWNYVKETPVKGPWSSEEDDHLKRLVDEFGSKKWNLLARAFPGRSGKQCRERWHNHVDGRVKKGEWSAEEDQILCEAQRQLGNKWSEMSKILVGRSENAIKNRFNSLNAKGLA 167
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BLAST of mRNA_E-fasciculatus_F_contig13416.2561.1 vs. uniprot
Match: A0A7S2WV82_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV82_9STRA)

HSP 1 Score: 172 bits (436), Expect = 9.730e-43
Identity = 78/112 (69.64%), Postives = 95/112 (84.82%), Query Frame = 1 
Query:    1 RWQMVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKRL 336
            RW++VK NPVKGPW PEED LL+ LV ++G K+WS IA + PGR+GKQCRERWLNHLD+ VKKS WT  ED  L EAQ R+GN+WSEI+++LPGRAENAVKNR+NS+ITK+L
Sbjct:  178 RWRVVKNNPVKGPWLPEEDQLLRDLVGQFGPKQWSKIAEKIPGRAGKQCRERWLNHLDSSVKKSDWTPEEDKILLEAQRRVGNRWSEIARMLPGRAENAVKNRYNSLITKKL 289
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13416.2561.1 vs. uniprot
Match: W7TQR3_9STRA (Myb-related protein a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQR3_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.860e-41
Identity = 78/113 (69.03%), Postives = 90/113 (79.65%), Query Frame = 1 
Query:    1 RWQMVKANPVKGPWSPEEDSLLKVLVDEYGR--KKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKR 333
            RW  +K  PVKGPWS EED+LL++LV  YG   KKWS++A   PGR+GKQCRERWLNHLD  VKK  W   ED  LC+AQ RLGNKWSEI+KLLPGRAEN+VKNRFNS+IT+R
Sbjct:  189 RWDEIKDVPVKGPWSVEEDALLQLLVGRYGPRPKKWSMLAQHIPGRAGKQCRERWLNHLDRSVKKGEWEEGEDAILCDAQRRLGNKWSEIAKLLPGRAENSVKNRFNSLITRR 301
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13416.2561.1 vs. uniprot
Match: K8YTL3_NANGC (V-myb myeloblastosis viral oncogene-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YTL3_NANGC)

HSP 1 Score: 166 bits (420), Expect = 7.120e-41
Identity = 78/113 (69.03%), Postives = 89/113 (78.76%), Query Frame = 1 
Query:    1 RWQMVKANPVKGPWSPEEDSLLKVLVDEYGR--KKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKR 333
            RW  +K  PVKGPWS EED+LL+ LV  YG   KKWS++A   PGR+GKQCRERWLNHLD  VKK  W   ED  LC+AQ RLGNKWSEI+KLLPGRAEN+VKNRFNS+IT+R
Sbjct:   60 RWDEIKDVPVKGPWSVEEDALLQQLVGRYGPRPKKWSMLAQHIPGRAGKQCRERWLNHLDRSVKKGEWEEGEDAILCDAQRRLGNKWSEIAKLLPGRAENSVKNRFNSLITRR 172
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13416.2561.1 vs. uniprot
Match: A0A8J2SUI4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUI4_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.290e-39
Identity = 77/113 (68.14%), Postives = 92/113 (81.42%), Query Frame = 1 
Query:    1 RWQM-VKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKRL 336
            RW   V+   VKGPW PEED+LL+ LV ++G K+W+LIA+  PGR+GKQCRERWLNHLD+RV KS WT  ED  L +AQ R+GNKWSEI++ LPGRAENAVKNRFNS+ITKRL
Sbjct:  106 RWDAAVRHAAVKGPWLPEEDNLLRQLVAKFGPKRWALIASHIPGRAGKQCRERWLNHLDSRVVKSDWTPDEDAILLDAQQRVGNKWSEIARGLPGRAENAVKNRFNSLITKRL 218
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13416.2561.1 vs. uniprot
Match: A0A7S2WRT1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WRT1_9STRA)

HSP 1 Score: 151 bits (381), Expect = 4.690e-36
Identity = 68/102 (66.67%), Postives = 81/102 (79.41%), Query Frame = 1 
Query:   28 VKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKR 333
            +KGPW+ +ED LL  LV EYG KKWS+IA   PGR GKQCRERWLNHLD+ VKKS WT AED  L  AQ ++GN+W EI+KLLPGR ENAVKNR+NS++ +R
Sbjct:  120 IKGPWTRDEDELLAKLVKEYGPKKWSVIAAHVPGRIGKQCRERWLNHLDSSVKKSPWTDAEDATLLRAQDKVGNRWCEIAKLLPGRPENAVKNRWNSLMNRR 221
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13416.2561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKP8_ECTSI3.720e-18281.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU69_9PHAE1.280e-15576.06MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
F0YHL4_AURAN7.600e-4871.68Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A835Z962_9STRA1.220e-4567.57Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
D7FZ02_ECTSI8.460e-4369.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WV82_9STRA9.730e-4369.64Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
W7TQR3_9STRA1.860e-4169.03Myb-related protein a n=1 Tax=Nannochloropsis gadi... [more]
K8YTL3_NANGC7.120e-4169.03V-myb myeloblastosis viral oncogene-like protein n... [more]
A0A8J2SUI4_9STRA1.290e-3968.14Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2WRT1_9STRA4.690e-3666.67Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13416contigE-fasciculatus_F_contig13416:397..3653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score555.4
Seed ortholog evalue2.5e-155
Seed eggNOG ortholog2880.D8LKP8
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-03_001110.1
Exons5
Model size1449
Cds size1440
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13416.2561.1prot_E-fasciculatus_F_contig13416.2561.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13416 406..3653 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927842.670572-UTR-E-fasciculatus_F_contig13416:396..4051622927842.670572-UTR-E-fasciculatus_F_contig13416:396..405Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13416 397..405 +
1695995718.8163993-UTR-E-fasciculatus_F_contig13416:396..4051695995718.8163993-UTR-E-fasciculatus_F_contig13416:396..405Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13416 397..405 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927842.682701-CDS-E-fasciculatus_F_contig13416:405..4971622927842.682701-CDS-E-fasciculatus_F_contig13416:405..497Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13416 406..497 +
1695995718.8288505-CDS-E-fasciculatus_F_contig13416:405..4971695995718.8288505-CDS-E-fasciculatus_F_contig13416:405..497Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13416 406..497 +
1622927842.692605-CDS-E-fasciculatus_F_contig13416:905..11121622927842.692605-CDS-E-fasciculatus_F_contig13416:905..1112Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13416 906..1112 +
1695995718.8390718-CDS-E-fasciculatus_F_contig13416:905..11121695995718.8390718-CDS-E-fasciculatus_F_contig13416:905..1112Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13416 906..1112 +
1622927842.7074654-CDS-E-fasciculatus_F_contig13416:1521..17441622927842.7074654-CDS-E-fasciculatus_F_contig13416:1521..1744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13416 1522..1744 +
1695995718.8516724-CDS-E-fasciculatus_F_contig13416:1521..17441695995718.8516724-CDS-E-fasciculatus_F_contig13416:1521..1744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13416 1522..1744 +
1622927842.7199795-CDS-E-fasciculatus_F_contig13416:2314..30191622927842.7199795-CDS-E-fasciculatus_F_contig13416:2314..3019Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13416 2315..3019 +
1695995718.8608322-CDS-E-fasciculatus_F_contig13416:2314..30191695995718.8608322-CDS-E-fasciculatus_F_contig13416:2314..3019Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13416 2315..3019 +
1622927842.730386-CDS-E-fasciculatus_F_contig13416:3440..36531622927842.730386-CDS-E-fasciculatus_F_contig13416:3440..3653Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13416 3441..3653 +
1695995718.8710487-CDS-E-fasciculatus_F_contig13416:3440..36531695995718.8710487-CDS-E-fasciculatus_F_contig13416:3440..3653Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13416 3441..3653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13416.2561.1

>prot_E-fasciculatus_F_contig13416.2561.1 ID=prot_E-fasciculatus_F_contig13416.2561.1|Name=mRNA_E-fasciculatus_F_contig13416.2561.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=480bp
MVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERW
LNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNR
FNSIITKRLASQGISVKGSGLMKANMAKDLAANGTLSHSMNILKSADKEK
LQQQLLQQQQQQRQRSGKESSKRQIRKKRAPAGFDDNASESDCSSSGDDD
EDEDEDDDDDDGDMEVYPNQQQQRMAFPLSPPPPYDVGEAADFTHDGRPR
VPPAGPPAAAARGNGRPTATNSGGTNDGKHFAAGESSSGGSGITRGANNV
GTTAAAAFSNATAAAAAAAAAAVASANAAATAAGTFAAGVLSSSSPPGDA
TDKAGRPPAGGAREDQLMRSIFGLLGGKPAQRGGFEPARRHHVYDRDGGC
GAGAFAGARIPAGNNKRPSEGFLHLDSVAFRRNGSNNAALATGEGAVMDE
ASAAAAAAAAVAVMPSSSSSSVPQGRVLED
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mRNA from alignment at E-fasciculatus_F_contig13416:397..3653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13416.2561.1 ID=mRNA_E-fasciculatus_F_contig13416.2561.1|Name=mRNA_E-fasciculatus_F_contig13416.2561.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3257bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13416:397..3653+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTGGCAAATGGTGAAGGCTAACCCCGTCAAGGGCCCGTGGTCTCCGGA
GGAAGACTCCCTGCTCAAGGTCCTCGTCGACGAGTACGGCAGGAAGAAGT
GGTGAGACTCGCCGATACTGTCCACAATTACAGCGGGGCCAATGACTATA
CCCCCGCCCTCCGCTGTAAAAACCTTGAAGCAAGTAGTCCCCCCTTAGCC
TGGGCCGGCAAAAACCGGGCATATCGCTCCGTCCCGACCGTGTAGGAATG
CAATGTCTACGGTCTAACGACTACGGCACGCACGGCTAAGAGTACCCCCC
TTACCCTTGCAGCCTTACTCCCCTCTTCTCTATTACCAACGGCCTCCTTT
CTGTAGGAGCTTGATCGCGACGCCTATCTATCCTTCAAGCTTCATCCCTC
CCTCTTCTCCAAAACCAACAGCCTCCTATATTCAGGAGCTTGATCGGGAC
GCCAGTCCTTCAAGCTTTAACCTGCCCCTTTCCCAAACCGAACGGCCTCC
CACGTCCAGGAGCTTGATCGCGACGCAATTTCCGGGAAGATCCGGCAAGC
AGTGCCGTGAGCGGTGGCTGAACCACCTCGACACCCGCGTGAAGAAGAGT
GCCTGGACGGGAGCGGAGGACGTCAAACTGTGCGAGGCCCAGGGAAGGCT
AGGCAACAAGTGGTCGGAGATCTCCAAGCTGCTCCCTGGCAGGGCGGAGA
ACGCCGTCAAGAACAGGTATGCATAGGTCGGGTGTAGTACTGTTCTTGTG
TTTGTTATGTTGGCTCAAGTTTTCTGCACAGAGTCAGTGTCTTCTTTTTT
TTTTCTCCGAGCTGCTTTCGTATTGGGCGCGTAGGAGTTGCCGTCAACAG
AGAACGTAATCTGCTACTTGGGTATGAACAAAGTTAAATTGGTTTTTCTC
CGCACGACGTTTTTTTCTTTCAGTTATCTCCTGCTCTTGAGGTGATTTGA
AAAACTAAAACAAGAAAGCCCAGTATCCAGCAGTTTTTTCTCACCCGTCA
ATCTATAAAAGACTTCAACATGTCCCTTCGATGGGAGTATTTCCCAGAAC
GGGTGATATTTTCTTTCTGTACAATGTACTTCGTTTTCTTGTCGTTCTTT
TTCTTGTCTCCCCTTGTTCCCCAAGGTTCAACTCCATCATCACCAAGCGC
CTGGCGTCCCAGGGTATCTCCGTCAAGGGCAGCGGCCTGATGAAGGCCAA
CATGGCCAAGGACCTTGCAGCGAATGGCACCCTCTCCCACAGCATGAATA
TCCTCAAGAGCGCCGACAAGGAAAAATTGCAGCAGCAGCTGCTGCAGCAA
CAGCAGCAGCAGCGGCAGCGGAGCGGGAAGGAATCCTCTAAGCGTCAGGT
GAGGGAGGCACGGCAGTAGCGCTTGGCTTTAGCGTGCGTGCGTGAACATC
GCTTCGCTGATAGTGTAGGTATCACTTCACCTGGGTGTGTTATGGGCGTG
AACGTATACTTCCCCTCTCGCTTGACTGTAGGGCTGAAAACTACTTGGCT
TGAGTGTTGAGGTGATGTCGTTCGGGTGGCGGTATATCGTCCCCATCCAT
TCTGGCTCCAGCCTACATACCTCTCGGTGATGTAGTACATATGTGTTTGA
CATATCAGGCGGGGTGACGCATGAGGAAAGCCACGCAGGCGCTTTGATTA
TGTTCTTGATAGACGGCGAACTGGCATGAATCGCTTGACGCTACCCGGTA
GGCGCTGCCTTCCCGTCCTGAAGAAACGAAGAAACAGGAGACCCCCACAC
ATGTACTCGTTGGCCTTATTTCTCACGGAAGGAAAAACAATACCGAATAG
GAGCGACTTCTTCTGCGACTAGCCCGCCCTCCGTTCTTCCTCGCCCCCCC
CTATCTGCCGGCCTCCTGTGTGCATGTGTATGACGATGGGAACAAACATG
TTTTTCGTGCGCCCACAGATCCGCAAGAAGAGAGCCCCCGCCGGCTTCGA
CGACAACGCCTCCGAATCGGACTGTTCCTCCTCCGGTGACGATGACGAGG
ACGAGGACGAAGACGACGACGACGACGATGGAGACATGGAGGTCTACCCC
AACCAACAGCAGCAGCGGATGGCGTTCCCCCTGTCGCCGCCACCCCCGTA
CGACGTCGGAGAAGCCGCCGACTTCACTCACGACGGAAGACCGAGGGTGC
CACCGGCAGGCCCCCCCGCCGCCGCCGCTCGCGGTAACGGCAGACCCACC
GCCACCAACAGCGGCGGAACCAACGACGGCAAGCACTTCGCCGCCGGCGA
GTCTTCTTCCGGTGGCAGCGGGATCACGCGAGGAGCGAACAACGTGGGCA
CCACCGCCGCCGCCGCCTTCTCCAACGCCACCGCCGCCGCCGCCGCTGCC
GCCGCCGCTGCGGTGGCCTCGGCCAACGCCGCCGCTACGGCCGCGGGAAC
CTTCGCCGCCGGCGTGCTCTCCTCCTCCTCCCCGCCCGGCGACGCCACCG
ACAAGGCGGGGAGGCCGCCGGCGGGGGGGGCGCGGGAGGACCAGCTGATG
CGGTCGATCTTTGGGCTCCTCGGGGGGAAGCCGGCCCAGAGGGGGGGCTT
TGAGCCCGCACGGAGACACCACGTTTACGACAGGGATGGCGGTTGCGGCG
CGGGGGCTTTTGCTGGAGCAAGGGTGAGCGTGAAGGTGGAGGCGTTGCTC
GTGTGCTTTCTGACGGCCTCGTCGGGACAGCAGCGTTCCGGCTGTCATTG
TCTTCAGCGAAGTGCGAGCGAACCTGTTGTGGTGGTTGTTGTTGCACACT
GCGGTTGCTTGGCCCAAGATTGGTTTCGTGTGTGGCGGGAACGATTGGTT
CTCTCCAATGTACCGCCCAAGCCTTGAGTACACCTAGCACCAGCAGTTCT
CAGACCGGTCTGACCAGAAAAGATGTCCAAACGTGACGATCAGGAATAAA
CTTCTTCTTTTCTAATCCAAAGGTTTTGAATTGTCCCTGAAGTTGTCGGC
AAGTCTGGTTTATGGAGTGCTCGCGCTTGCCCGCCCCTCGCGCGCGCTAA
ACAACCTCTCGCTCGTATTCTGAAAACGTGGCGCAACTTTTCAGATACCG
GCCGGCAACAACAAGAGGCCGTCCGAGGGTTTCCTCCACCTGGACTCGGT
GGCGTTTCGCCGAAACGGCAGCAATAACGCCGCCCTGGCTACCGGGGAAG
GGGCCGTCATGGACGAGGCAAGCGCGGCGGCGGCGGCGGCGGCGGCGGTG
GCGGTGATGCCTTCGTCGTCTTCTTCCTCGGTTCCACAAGGGCGGGTACT
CGAAGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13416:397..3653+

>mRNA_E-fasciculatus_F_contig13416.2561.1 ID=mRNA_E-fasciculatus_F_contig13416.2561.1|Name=mRNA_E-fasciculatus_F_contig13416.2561.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2880bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13416:397..3653+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGAAGGCTAACCCCGTCAAGGGCCCGTGGTCTCCGGAGGAAGACTC
CCTGCTCAAGGTCCTCGTCGACGAGTACGGCAGGAAGAAGTGATGGTGAA
GGCTAACCCCGTCAAGGGCCCGTGGTCTCCGGAGGAAGACTCCCTGCTCA
AGGTCCTCGTCGACGAGTACGGCAGGAAGAAGTGGAGCTTGATCGCGACG
CAATTTCCGGGAAGATCCGGCAAGCAGTGCCGTGAGCGGTGGCTGAACCA
CCTCGACACCCGCGTGAAGAAGAGTGCCTGGACGGGAGCGGAGGACGTCA
AACTGTGCGAGGCCCAGGGAAGGCTAGGCAACAAGTGGTCGGAGATCTCC
AAGCTGCTCCCTGGCAGGGCGGAGAACGCCGTCAAGAACAGGAGCTTGAT
CGCGACGCAATTTCCGGGAAGATCCGGCAAGCAGTGCCGTGAGCGGTGGC
TGAACCACCTCGACACCCGCGTGAAGAAGAGTGCCTGGACGGGAGCGGAG
GACGTCAAACTGTGCGAGGCCCAGGGAAGGCTAGGCAACAAGTGGTCGGA
GATCTCCAAGCTGCTCCCTGGCAGGGCGGAGAACGCCGTCAAGAACAGGT
TCAACTCCATCATCACCAAGCGCCTGGCGTCCCAGGGTATCTCCGTCAAG
GGCAGCGGCCTGATGAAGGCCAACATGGCCAAGGACCTTGCAGCGAATGG
CACCCTCTCCCACAGCATGAATATCCTCAAGAGCGCCGACAAGGAAAAAT
TGCAGCAGCAGCTGCTGCAGCAACAGCAGCAGCAGCGGCAGCGGAGCGGG
AAGGAATCCTCTAAGCGTCAGGTTCAACTCCATCATCACCAAGCGCCTGG
CGTCCCAGGGTATCTCCGTCAAGGGCAGCGGCCTGATGAAGGCCAACATG
GCCAAGGACCTTGCAGCGAATGGCACCCTCTCCCACAGCATGAATATCCT
CAAGAGCGCCGACAAGGAAAAATTGCAGCAGCAGCTGCTGCAGCAACAGC
AGCAGCAGCGGCAGCGGAGCGGGAAGGAATCCTCTAAGCGTCAGATCCGC
AAGAAGAGAGCCCCCGCCGGCTTCGACGACAACGCCTCCGAATCGGACTG
TTCCTCCTCCGGTGACGATGACGAGGACGAGGACGAAGACGACGACGACG
ACGATGGAGACATGGAGGTCTACCCCAACCAACAGCAGCAGCGGATGGCG
TTCCCCCTGTCGCCGCCACCCCCGTACGACGTCGGAGAAGCCGCCGACTT
CACTCACGACGGAAGACCGAGGGTGCCACCGGCAGGCCCCCCCGCCGCCG
CCGCTCGCGGTAACGGCAGACCCACCGCCACCAACAGCGGCGGAACCAAC
GACGGCAAGCACTTCGCCGCCGGCGAGTCTTCTTCCGGTGGCAGCGGGAT
CACGCGAGGAGCGAACAACGTGGGCACCACCGCCGCCGCCGCCTTCTCCA
ACGCCACCGCCGCCGCCGCCGCTGCCGCCGCCGCTGCGGTGGCCTCGGCC
AACGCCGCCGCTACGGCCGCGGGAACCTTCGCCGCCGGCGTGCTCTCCTC
CTCCTCCCCGCCCGGCGACGCCACCGACAAGGCGGGGAGGCCGCCGGCGG
GGGGGGCGCGGGAGGACCAGCTGATGCGGTCGATCTTTGGGCTCCTCGGG
GGGAAGCCGGCCCAGAGGGGGGGCTTTGAGCCCGCACGGAGACACCACGT
TTACGACAGGGATGGCGGTTGCGGCGCGGGGGCTTTTGCTGGAGCAAGGA
TCCGCAAGAAGAGAGCCCCCGCCGGCTTCGACGACAACGCCTCCGAATCG
GACTGTTCCTCCTCCGGTGACGATGACGAGGACGAGGACGAAGACGACGA
CGACGACGATGGAGACATGGAGGTCTACCCCAACCAACAGCAGCAGCGGA
TGGCGTTCCCCCTGTCGCCGCCACCCCCGTACGACGTCGGAGAAGCCGCC
GACTTCACTCACGACGGAAGACCGAGGGTGCCACCGGCAGGCCCCCCCGC
CGCCGCCGCTCGCGGTAACGGCAGACCCACCGCCACCAACAGCGGCGGAA
CCAACGACGGCAAGCACTTCGCCGCCGGCGAGTCTTCTTCCGGTGGCAGC
GGGATCACGCGAGGAGCGAACAACGTGGGCACCACCGCCGCCGCCGCCTT
CTCCAACGCCACCGCCGCCGCCGCCGCTGCCGCCGCCGCTGCGGTGGCCT
CGGCCAACGCCGCCGCTACGGCCGCGGGAACCTTCGCCGCCGGCGTGCTC
TCCTCCTCCTCCCCGCCCGGCGACGCCACCGACAAGGCGGGGAGGCCGCC
GGCGGGGGGGGCGCGGGAGGACCAGCTGATGCGGTCGATCTTTGGGCTCC
TCGGGGGGAAGCCGGCCCAGAGGGGGGGCTTTGAGCCCGCACGGAGACAC
CACGTTTACGACAGGGATGGCGGTTGCGGCGCGGGGGCTTTTGCTGGAGC
AAGGATACCGGCCGGCAACAACAAGAGGCCGTCCGAGGGTTTCCTCCACC
TGGACTCGGTGGCGTTTCGCCGAAACGGCAGCAATAACGCCGCCCTGGCT
ACCGGGGAAGGGGCCGTCATGGACGAGGCAAGCGCGGCGGCGGCGGCGGC
GGCGGCGGTGGCGGTGATGCCTTCGTCGTCTTCTTCCTCGGTTCCACAAG
GGCGGGTACTCGAAGACATACCGGCCGGCAACAACAAGAGGCCGTCCGAG
GGTTTCCTCCACCTGGACTCGGTGGCGTTTCGCCGAAACGGCAGCAATAA
CGCCGCCCTGGCTACCGGGGAAGGGGCCGTCATGGACGAGGCAAGCGCGG
CGGCGGCGGCGGCGGCGGCGGTGGCGGTGATGCCTTCGTCGTCTTCTTCC
TCGGTTCCACAAGGGCGGGTACTCGAAGAC
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