mRNA_E-fasciculatus_F_contig13413.2560.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13413.2560.1
Unique NamemRNA_E-fasciculatus_F_contig13413.2560.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13413.2560.1 vs. uniprot
Match: A0A0E0L796_ORYPU (RING-type domain-containing protein n=2 Tax=Oryza TaxID=4527 RepID=A0A0E0L796_ORYPU)

HSP 1 Score: 53.1 bits (126), Expect = 1.440e-6
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 PLHRAAAYNHQDIASLLLERGADIEARDGTGQTPLFWACKGG 126
            PLH AAA  H +IA+LLLE GAD+ AR+  GQTPL  AC+ G
Sbjct:   48 PLHVAAAKGHHEIAALLLENGADVNARNIYGQTPLMQACRFG 89
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13413.2560.1 vs. uniprot
Match: XB36_ORYSJ (Probable E3 ubiquitin-protein ligase XBOS36 n=14 Tax=Oryza TaxID=4527 RepID=XB36_ORYSJ)

HSP 1 Score: 53.1 bits (126), Expect = 1.440e-6
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 PLHRAAAYNHQDIASLLLERGADIEARDGTGQTPLFWACKGG 126
            PLH AAA  H +IA+LLLE GAD+ AR+  GQTPL  AC+ G
Sbjct:   48 PLHVAAAKGHHEIAALLLENGADVNARNIYGQTPLMQACRFG 89
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13413.2560.1 vs. uniprot
Match: A0A3B6RBT2_WHEAT (RING-type domain-containing protein n=19 Tax=Triticeae TaxID=147389 RepID=A0A3B6RBT2_WHEAT)

HSP 1 Score: 52.8 bits (125), Expect = 1.970e-6
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 PLHRAAAYNHQDIASLLLERGADIEARDGTGQTPLFWACKGG 126
            PLH AA   H +IA+LLLE+GAD  AR+  GQTPL  AC+ G
Sbjct:   49 PLHLAATKGHHEIAALLLEKGADANARNVYGQTPLMQACRSG 90
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13413.2560.1 vs. uniprot
Match: A0A8J5WM41_ZIZPA (Uncharacterized protein n=2 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WM41_ZIZPA)

HSP 1 Score: 52.4 bits (124), Expect = 2.690e-6
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 PLHRAAAYNHQDIASLLLERGADIEARDGTGQTPLFWACKGG 126
            PLH AAA  H +IA+LLLE GAD+ A++  GQTPL  AC+ G
Sbjct:   48 PLHLAAAKGHHEIAALLLENGADVNAKNIYGQTPLMQACRFG 89
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13413.2560.1 vs. uniprot
Match: A0A453QI97_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453QI97_AEGTS)

HSP 1 Score: 52.0 bits (123), Expect = 3.450e-6
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 PLHRAAAYNHQDIASLLLERGADIEARDGTGQTPLFWACKGG 126
            PLH AA   H +IA+LLLE+GAD  AR+  GQTPL  AC+ G
Sbjct:   13 PLHLAATKGHHEIAALLLEKGADPNARNVYGQTPLMQACRSG 54
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13413.2560.1 vs. uniprot
Match: A0A446JVK6_TRITD (Uncharacterized protein n=2 Tax=Pooideae TaxID=147368 RepID=A0A446JVK6_TRITD)

HSP 1 Score: 51.2 bits (121), Expect = 6.670e-6
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 PLHRAAAYNHQDIASLLLERGADIEARDGTGQTPLFWACKGG 126
            PLH AAA  H DI +LLLE+GAD+ AR+  GQT L  AC+ G
Sbjct:   48 PLHFAAAKGHLDIVTLLLEKGADVNARNYCGQTALMHACRHG 89
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13413.2560.1 vs. uniprot
Match: A0A452YNL1_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YNL1_AEGTS)

HSP 1 Score: 51.2 bits (121), Expect = 6.780e-6
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 PLHRAAAYNHQDIASLLLERGADIEARDGTGQTPLFWACKGG 126
            PLH AAA  H DI +LLLE+GAD+ AR+  GQT L  AC+ G
Sbjct:  124 PLHFAAAKGHLDIVTLLLEKGADVNARNYCGQTALMHACRHG 165
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13413.2560.1 vs. uniprot
Match: A0A3B5ZTF7_WHEAT (RING-type domain-containing protein n=18 Tax=Pooideae TaxID=147368 RepID=A0A3B5ZTF7_WHEAT)

HSP 1 Score: 51.2 bits (121), Expect = 6.940e-6
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 PLHRAAAYNHQDIASLLLERGADIEARDGTGQTPLFWACKGG 126
            PLH AAA  H DI +LLLE+GAD+ AR+  GQT L  AC+ G
Sbjct:   48 PLHFAAAKGHLDIVTLLLEKGADVNARNYCGQTALMHACRHG 89
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13413.2560.1 vs. uniprot
Match: A0A0C3CNZ0_9PEZI (Uncharacterized protein (Fragment) n=1 Tax=Oidiodendron maius Zn TaxID=913774 RepID=A0A0C3CNZ0_9PEZI)

HSP 1 Score: 47.8 bits (112), Expect = 7.670e-6
Identity = 23/42 (54.76%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    1 PLHRAAAYNHQDIASLLLERGADIEARDGTGQTPLFWACKGG 126
            PLH AA      IA +LLE+GADI+A+DG  +TPL  AC  G
Sbjct:    5 PLHLAALNGRDKIARMLLEKGADIQAKDGDQETPLHLACSKG 46
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13413.2560.1 vs. uniprot
Match: A0A1U7ZN01_NELNU (E3 ubiquitin-protein ligase XBAT33-like isoform X2 n=3 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7ZN01_NELNU)

HSP 1 Score: 50.8 bits (120), Expect = 9.490e-6
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 PLHRAAAYNHQDIASLLLERGADIEARDGTGQTPLFWACKGG 126
            PLH AAA  H +IASLLLE GAD+ +R+  GQT L  AC+ G
Sbjct:   48 PLHFAAAKGHNEIASLLLENGADVNSRNYCGQTALMQACRYG 89
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13413.2560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0E0L796_ORYPU1.440e-661.90RING-type domain-containing protein n=2 Tax=Oryza ... [more]
XB36_ORYSJ1.440e-661.90Probable E3 ubiquitin-protein ligase XBOS36 n=14 T... [more]
A0A3B6RBT2_WHEAT1.970e-659.52RING-type domain-containing protein n=19 Tax=Triti... [more]
A0A8J5WM41_ZIZPA2.690e-659.52Uncharacterized protein n=2 Tax=Zizania palustris ... [more]
A0A453QI97_AEGTS3.450e-659.52Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A446JVK6_TRITD6.670e-659.52Uncharacterized protein n=2 Tax=Pooideae TaxID=147... [more]
A0A452YNL1_AEGTS6.780e-659.52Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A3B5ZTF7_WHEAT6.940e-659.52RING-type domain-containing protein n=18 Tax=Pooid... [more]
A0A0C3CNZ0_9PEZI7.670e-654.76Uncharacterized protein (Fragment) n=1 Tax=Oidiode... [more]
A0A1U7ZN01_NELNU9.490e-659.52E3 ubiquitin-protein ligase XBAT33-like isoform X2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13413contigE-fasciculatus_F_contig13413:439..1393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-20_000380.1
Exons2
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927842.6277118-CDS-E-fasciculatus_F_contig13413:438..5521622927842.6277118-CDS-E-fasciculatus_F_contig13413:438..552Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13413 439..552 -
1695995718.798523-CDS-E-fasciculatus_F_contig13413:438..5521695995718.798523-CDS-E-fasciculatus_F_contig13413:438..552Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13413 439..552 -
1622927842.6381207-CDS-E-fasciculatus_F_contig13413:1318..13931622927842.6381207-CDS-E-fasciculatus_F_contig13413:1318..1393Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13413 1319..1393 -
1695995718.8062606-CDS-E-fasciculatus_F_contig13413:1318..13931695995718.8062606-CDS-E-fasciculatus_F_contig13413:1318..1393Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13413 1319..1393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13413.2560.1prot_E-fasciculatus_F_contig13413.2560.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13413 439..1393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13413.2560.1

>prot_E-fasciculatus_F_contig13413.2560.1 ID=prot_E-fasciculatus_F_contig13413.2560.1|Name=mRNA_E-fasciculatus_F_contig13413.2560.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=63bp
PLHRAAAYNHQDIASLLLERGADIEARDGTGQTPLFWACKGGHGEMITLL
LSKGAHINAQDTK
back to top

mRNA from alignment at E-fasciculatus_F_contig13413:439..1393-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13413.2560.1 ID=mRNA_E-fasciculatus_F_contig13413.2560.1|Name=mRNA_E-fasciculatus_F_contig13413.2560.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=955bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13413:439..1393- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTCTGCACCGGGCAGCGGCGTACAATCACCAAGACATCGCCAGTCTTCT
GCTAGAAAGGGGGGCTGACATTGAGGTATGTAACTACGCACGTTTGTTGT
CACTTGTCACTCCGCCTTCCTCACAAGAATCGGCAATGTACAGGAGTGCG
CCGTTCATTTCTATCCCAACGAGCCGCTCTATGTACTGTTTTCACAAAGC
GTGTGCAATATATGTGATGCGATTTGCTCCGTTGGTCACGATCCCCTAAA
CGCCAGCACCTTTTGTTGTACATGTGACAACAACAACAAACCGCCCCCGA
TTTTCCAACACGCGCACAACTTTCTCTCCACCCCTGTCCTGTCCTCTTCC
CCACGGTTTCCGATCATTTTTCTTCTGCACTTTCCCCAATTTTTTACCGC
CTGCTCAACATCACTTCCTGTTTGGTAGTTGTCGTACTACACGCAATCCC
TCCACGTCTTGCTCTGGGAATACATGTCATAGTTTTCCCTAGCATGTGCA
ATGTATTAGTGCCTGATTTTGCCTTGTGCTGGCCCATCGAGTCCCGGTCT
AGTTGCCGGACTCAAGGATACACCGCCTATCATACACCAGGTTTTGTGTC
CCTGCGCCTCTTTGTTGTGATTTTCCGAACAACGTCCTGTACCACCCTGC
CTCCTGAACAGGCCTCAATCTGCTTCGTGTTCGAGCTCTGCTTGGAGGGC
TTGCGTATAGGAATCACTCTGATTTGCTTTGTCGGGACAAGTTTGTTTGG
TGATATAATGATATGATGGCATGATGGCATGAAAAACATTATGACATGGT
AACATGAAAGGCATGGATGACATGATGGCATGATGACGCAGGCACGAGAC
GGGACTGGGCAAACGCCGTTGTTTTGGGCGTGCAAAGGGGGACACGGGGA
GATGATCACCCTCCTGCTTTCCAAGGGGGCTCACATCAACGCGCAAGACA
CGAAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13413:439..1393-

>mRNA_E-fasciculatus_F_contig13413.2560.1 ID=mRNA_E-fasciculatus_F_contig13413.2560.1|Name=mRNA_E-fasciculatus_F_contig13413.2560.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=378bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13413:439..1393- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTCTGCACCGGGCAGCGGCGTACAATCACCAAGACATCGCCAGTCTTCT
GCTAGAAAGGGGGGCTGACATTGAGCCTCTGCACCGGGCAGCGGCGTACA
ATCACCAAGACATCGCCAGTCTTCTGCTAGAAAGGGGGGCTGACATTGAG
GCACGAGACGGGACTGGGCAAACGCCGTTGTTTTGGGCGTGCAAAGGGGG
ACACGGGGAGATGATCACCCTCCTGCTTTCCAAGGGGGCTCACATCAACG
CGCAAGACACGAAAGCACGAGACGGGACTGGGCAAACGCCGTTGTTTTGG
GCGTGCAAAGGGGGACACGGGGAGATGATCACCCTCCTGCTTTCCAAGGG
GGCTCACATCAACGCGCAAGACACGAAA
back to top