mRNA_E-fasciculatus_F_contig13405.2552.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13405.2552.1
Unique NamemRNA_E-fasciculatus_F_contig13405.2552.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: D8LGC6_ECTSI (Eukaryotic translation initiation factor 2B gamma subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC6_ECTSI)

HSP 1 Score: 389 bits (999), Expect = 2.680e-133
Identity = 197/204 (96.57%), Postives = 202/204 (99.02%), Query Frame = 1
Query:    1 QLHVSKRSDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLAGEALRGDAMVARMSSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
            +LHVSKRSDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRN TTGGEPLTKR+GS+AGEALRGDAMVARMSSWRPSPDGDTADPGEG PGV+EVRCFALTLRHGEAYCSQAKTLAAYCTINRE+
Sbjct:  124 ELHVSKRSDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNPTTGGEPLTKRVGSVAGEALRGDAMVARMSSWRPSPDGDTADPGEGTPGVNEVRCFALTLRHGEAYCSQAKTLAAYCTINREL 327          
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: A0A835YVP1_9STRA (Eukaryotic translation initiation factor 2B gamma subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP1_9STRA)

HSP 1 Score: 132 bits (331), Expect = 7.520e-33
Identity = 88/219 (40.18%), Postives = 126/219 (57.53%), Query Frame = 1
Query:    7 HVSKRSDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTK----RLGSLAGEALRGDA------------MVARMSSWRPSPDG-DTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
            H  + + +TMV++EE    D KG K  RP+RD+ED+D++GLT  GR+V+K P L VEEA+R+QKALLRRH +V++ T+L DV +YVL+  VL  L++ R I S+Q+EL PALVRRQF          T     R+  +A  A  G              M+ +++  + +P G   A  G+G  GV  V     T   G  YC QA+TLA Y  + +++
Sbjct:  126 HRRRGAALTMVLREEGLEVDKKG-KLGRPRRDDEDVDFIGLTPDGRVVMKAPLLDVEEAVRVQKALLRRHTSVSIGTSLMDVGLYVLSQSVLQHLEEHRFIGSLQDELAPALVRRQFAPPLPPAPSRTDQARGRISIIAPAASLGHGAPAPVAADYYNDMINKLNIAKGAPGGVAAAGAGDGGGGVCAV--VLRTAADGGGYCRQARTLAQYSGMTKDL 341          
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: A0A5D6XWU8_9STRA (NTP_transferase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWU8_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.370e-19
Identity = 66/198 (33.33%), Postives = 104/198 (52.53%), Query Frame = 1
Query:   22 SDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQS-GRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLAGEALRGDAMVARMSSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
            + VTM++K E      K R   +P+R+++ ID VGL +S  R+ +    + + + + + K+LL+R   V L + L D   Y+ AHWV+  L +++ I S++ +L+P LVRRQFR      E       S+  +A+   ++ A +S    + D D             VRCFA TL    AYC +A T+AAY  I+ EV
Sbjct:  129 ASVTMLLKREPSAAALKARGE-KPRREKDMIDCVGLVESESRVALIAQAVHMNDDMYVSKSLLKRRTNVALHSDLYDAHFYIFAHWVIDLLLEKKYIASIKADLIPHLVRRQFRGPAALPE-------SVRAKAVSRQSLAASLSLATQAFDPDDV-----------VRCFAYTLPPN-AYCERADTIAAYRAIDAEV 306          
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: M4BB89_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BB89_HYAAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.780e-19
Identity = 65/198 (32.83%), Postives = 100/198 (50.51%), Query Frame = 1
Query:   34 MVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQ-----SGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLAGEALRGDAMVARMSSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
            MV+++EAPV+ +K +   +P RD++  D  GL +       R+V+    + + E L + K+LL+R     L T L D   Y+ +HWVL  L +++ I S++ +L+P LVRRQFR +    E       S+  +A    A+ A MS      D +             VRCFA  L    AYC +A T+ AY  ++ EV
Sbjct:    1 MVLRQEAPVRPSK-KPEKKPGRDKDMTDCFGLVECERNEENRVVLVSQAVHMNEHLDVAKSLLQRRSHFVLHTDLYDGHFYIFSHWVLDLLQEKKYIASIKADLIPHLVRRQFRGANVLPE-------SVRDKATSKQALAASMSLSEEQHDPEDL-----------VRCFAYVLP-SNAYCERADTIPAYRAMDEEV 178          
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: A0A2D4CFE4_PYTIN (Translation initiation factor eIF-2B subunit gamma, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFE4_PYTIN)

HSP 1 Score: 93.2 bits (230), Expect = 4.600e-19
Identity = 67/200 (33.50%), Postives = 102/200 (51.00%), Query Frame = 1
Query:   22 SDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLT-QSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLA--GEALRGDAMVARMSSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
            + VTM+++ E P+  AKG K   P+RD++  D +GL  +  R+V     + +EE + I KAL +R    TL T L D  +Y+ +HWVL +L +++ I S++ +LVP LVRRQFR      + + ++  +      +L      A  +   P  D D  D    +     VRCFA  L     Y  +A T AAY  +  EV
Sbjct:  129 ASVTMLLRPERPLDKAKGEK---PRRDKDMTDCIGLVPKENRVVFLSQAVHLEEDIAIAKALTKRRPHFTLHTDLYDAHLYIFSHWVLDYLQEKKDIASIKADLVPRLVRRQFRGRAALSDAVREKAVNKQHLAASLSLTTTTASAADVAPRHDNDL-DNDSNSSHDDIVRCFAYLLPTN-GYAERADTTAAYNAMKDEV 323          
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: A0A7S2S2G3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2G3_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.580e-19
Identity = 75/226 (33.19%), Postives = 112/226 (49.56%), Query Frame = 1
Query:    7 HVSKRSDVTMVVKEEAPVKDAKGRKTVRP-KRDEEDIDYVGLTQSGRLVIKLPKLFVEEALRIQKALLRRHET------VTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRN---STTGGEPLTKRLGSLAGE--ALRGDAMVARMSSW---RPSPDG-DTADPGEGAPGVSEVRCFALTLRHGE-------AYCS-QAKTLAAYCTINREV 612
            H    +D+T+++ +E P +  KG+K  +P KRDEEDI++VGL Q  R++ K P + VEE L I K LL R         V   + L D    VL+ WVL  LD      S++N+LVP L+RRQ  +   +++G      R  S AG      G  +  R +      P P   D   P +  P +   RCFAL +   +       + C+ +A T+ ++  +NREV
Sbjct:  159 HQRTDADLTILMVKEPPPQLEKGKKGNKPRKRDEEDIEFVGLAQQDRIIFKKPLVAVEEELTIPKTLLARTSLTGSGSKVHARSNLTDTQTLVLSRWVLELLDADDQFKSIKNDLVPYLIRRQLHSLSEASSGKASSVSRARSGAGSEPTAPGQPLPLRRTDSDGAMPRPRATDERAPKDNGPDLETCRCFALVVDRADPSALGPSSICTLRANTIHSFLEMNREV 384          
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: A0A3F2RU43_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RU43_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 6.720e-19
Identity = 66/202 (32.67%), Postives = 102/202 (50.50%), Query Frame = 1
Query:   22 SDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQS-----GRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLAGEALRGDAMVARMSSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
            + VTM++K+E   + AKG K   P+RD++  D + L +       R+V+    + + E L + K+LL+R     L + L D   Y+ +HWVL  L +++ I S++ +LVP LVRRQFR    G + L K   S+  +A     + A +S      D +             VRCFA  L    AYC +A T+ AY  ++ EV
Sbjct:   60 ASVTMLLKQEETARKAKGEK---PRRDKDMTDCIALVEGQRDEENRVVLVSQAVHMNEDLYVAKSLLKRRSNFVLHSDLYDAHFYIFSHWVLDLLQEKKYIVSIKADLVPHLVRRQFR----GADALPK---SVREKATCKQELAASLSLAEEKHDPEDL-----------VRCFAYVLPKN-AYCERADTIPAYKAMDEEV 239          
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: A0A485L011_9STRA (Aste57867_13374 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L011_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.690e-18
Identity = 72/213 (33.80%), Postives = 104/213 (48.83%), Query Frame = 1
Query:    4 LHVSKRSDVTMVVKEE---APVKDAKGRKTVRPKRDEEDIDYVGLTQSGRLVIKLPK-------LFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLAGEALRGDAMVARMSSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
            LH    + VTM++K+E   APVK AK ++  +P+RD E ID VGL ++   V+ +         +   E L +  ALL+R   + L T L D  VY+ +HWVL  L +++ I SV+ +L+P LVRRQFR      E +         E LR    VA   S         +  G+    V +V  + L      AYC +A T  AY  + +EV
Sbjct:  124 LHRINDASVTMLLKQEVIEAPVKGAKSKE--KPRRDREMIDCVGLVEADSRVVHISHSIFANDDMDTSEDLEMPLALLKRRPRINLRTDLYDAHVYIFSHWVLDLLHEKKHIASVKADLIPHLVRRQFRGPQALAESVR--------EKLRSSQYVANRLS--------VSCRGKDEDDVMKVFAYVLP---PNAYCERADTKEAYNAMAKEV 315          
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: G5AAU1_PHYSP (NTP_transferase domain-containing protein n=8 Tax=Peronosporaceae TaxID=4777 RepID=G5AAU1_PHYSP)

HSP 1 Score: 90.9 bits (224), Expect = 2.720e-18
Identity = 66/203 (32.51%), Postives = 102/203 (50.25%), Query Frame = 1
Query:   22 SDVTMVVKEEAPVKD-AKGRKTVRPKRDEEDIDYVGLTQS-----GRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLAGEALRGDAMVARMSSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
            + VTM++++E P +  AKG K   P+RD++  D + L +       R+V+    + + E L + K+LL+R     L T L D   Y+ +HWVL  L +++ I S++ +LVP LVRRQFR +    E + +R  S         A+ A +S      D +             VRCFA  L    AYC +A T+ AY  ++ EV
Sbjct:  129 ASVTMLLRQEEPARTKAKGEK---PRRDKDMTDCIALVEGQRDEENRVVLVSQAVHMNEDLYVAKSLLKRRSNFVLHTDLYDGHFYIFSHWVLDLLQEKKYIASIKADLVPHLVRRQFRGAAALPESVRERATSK-------QALAASLSLSEEKHDPEDL-----------VRCFAYVLP-SNAYCERADTIPAYKAMDEEV 309          
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: H3GX90_PHYRM (NTP_transferase domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=H3GX90_PHYRM)

HSP 1 Score: 89.7 bits (221), Expect = 6.910e-18
Identity = 66/199 (33.17%), Postives = 100/199 (50.25%), Query Frame = 1
Query:   22 SDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQ--SGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLAGEALRGDAMVARMSSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
            + VTM++++E P    KG K   P+RD++  D + L +    R+V+    + + E L + K+LL+R     L T L D   Y  +HWVL  L ++R I S++ +LVP LVRRQFR    G + L +   S+  +A     + A +S      D +             VRCFA  L    AYC +A T+ AY  ++ EV
Sbjct:  129 ASVTMLLRQEMPAHRLKGEK---PRRDKDMTDCIALVEHEENRVVLVSQAVHMNEELYVAKSLLKRRSNFVLHTDLYDGHFYFFSHWVLDLLQEKRYIASIKADLVPHLVRRQFR----GADALPE---SVRDKARSKQDLAASLSLAEEKHDPEDL-----------VRCFAYVLPPN-AYCERADTIPAYRAMDEEV 305          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGC6_ECTSI2.680e-13396.57Eukaryotic translation initiation factor 2B gamma ... [more]
A0A835YVP1_9STRA7.520e-3340.18Eukaryotic translation initiation factor 2B gamma ... [more]
A0A5D6XWU8_9STRA1.370e-1933.33NTP_transferase domain-containing protein n=1 Tax=... [more]
M4BB89_HYAAE3.780e-1932.83Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A2D4CFE4_PYTIN4.600e-1933.50Translation initiation factor eIF-2B subunit gamma... [more]
A0A7S2S2G3_9STRA5.580e-1933.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3F2RU43_9STRA6.720e-1932.67Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A485L011_9STRA2.690e-1833.80Aste57867_13374 protein n=1 Tax=Aphanomyces stella... [more]
G5AAU1_PHYSP2.720e-1832.51NTP_transferase domain-containing protein n=8 Tax=... [more]
H3GX90_PHYRM6.910e-1833.17NTP_transferase domain-containing protein n=13 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13405contigE-fasciculatus_F_contig13405:112..3641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score389.4
Seed ortholog evalue1e-105
Seed eggNOG ortholog2880.D8LGC6
Preferred nameEIF2B3
KEGG rclassRC00052,RC00120
KEGG koko:K03241,ko:K10258,ko:K19398
KEGG ReactionR07761,R09449,R10828
KEGG Pathwayko00062,ko01040,ko01110,ko01212,ko03013,map00062,map01040,map01110,map01212,map03013
KEGG ModuleM00415
GOsGO:0001666,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009987,GO:0010001,GO:0010033,GO:0010243,GO:0010467,GO:0014003,GO:0019538,GO:0019899,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021782,GO:0022008,GO:0023052,GO:0030154,GO:0030900,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034284,GO:0034641,GO:0034645,GO:0036293,GO:0036294,GO:0042063,GO:0042221,GO:0043043,GO:0043170,GO:0043434,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0048468,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051020,GO:0051716,GO:0060322,GO:0065007,GO:0065009,GO:0070482,GO:0070887,GO:0071453,GO:0071456,GO:0071704,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1208@1,KOG1462@2759
EC1.3.1.93
COG Functional cat.JM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03012,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioneukaryotic translation initiation factor 2B gamma subunit
Ec32 orthologEc-06_002600.1
Exons5
Model size612
Cds size612
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13405.2552.1prot_E-fasciculatus_F_contig13405.2552.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13405 112..3641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927841.8544335-CDS-E-fasciculatus_F_contig13405:111..2191622927841.8544335-CDS-E-fasciculatus_F_contig13405:111..219Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13405 112..219 +
1695995718.4038198-CDS-E-fasciculatus_F_contig13405:111..2191695995718.4038198-CDS-E-fasciculatus_F_contig13405:111..219Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13405 112..219 +
1622927841.8896148-CDS-E-fasciculatus_F_contig13405:1198..12701622927841.8896148-CDS-E-fasciculatus_F_contig13405:1198..1270Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13405 1199..1270 +
1695995718.4163973-CDS-E-fasciculatus_F_contig13405:1198..12701695995718.4163973-CDS-E-fasciculatus_F_contig13405:1198..1270Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13405 1199..1270 +
1622927841.9135723-CDS-E-fasciculatus_F_contig13405:1719..18531622927841.9135723-CDS-E-fasciculatus_F_contig13405:1719..1853Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13405 1720..1853 +
1695995718.4262466-CDS-E-fasciculatus_F_contig13405:1719..18531695995718.4262466-CDS-E-fasciculatus_F_contig13405:1719..1853Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13405 1720..1853 +
1622927841.9396882-CDS-E-fasciculatus_F_contig13405:2875..30161622927841.9396882-CDS-E-fasciculatus_F_contig13405:2875..3016Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13405 2876..3016 +
1695995718.4376347-CDS-E-fasciculatus_F_contig13405:2875..30161695995718.4376347-CDS-E-fasciculatus_F_contig13405:2875..3016Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13405 2876..3016 +
1622927841.9527266-CDS-E-fasciculatus_F_contig13405:3484..36411622927841.9527266-CDS-E-fasciculatus_F_contig13405:3484..3641Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13405 3485..3641 +
1695995718.4557433-CDS-E-fasciculatus_F_contig13405:3484..36411695995718.4557433-CDS-E-fasciculatus_F_contig13405:3484..3641Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13405 3485..3641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13405.2552.1

>prot_E-fasciculatus_F_contig13405.2552.1 ID=prot_E-fasciculatus_F_contig13405.2552.1|Name=mRNA_E-fasciculatus_F_contig13405.2552.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=204bp
QLHVSKRSDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQSGRLV
IKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQ
RAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLAGEALRGDAMVARM
SSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTI
NREV
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mRNA from alignment at E-fasciculatus_F_contig13405:112..3641+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13405.2552.1 ID=mRNA_E-fasciculatus_F_contig13405.2552.1|Name=mRNA_E-fasciculatus_F_contig13405.2552.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3530bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13405:112..3641+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCTGCACGTATCGAAGCGTTCGGACGTTACAATGGTCGTTAAGGAGGA GGCCCCCGTCAAGGACGCCAAGGGTCGCAAGACAGTGCGGCCCAAGCGGG ACGAGGAGGTAACCCCCCCCCCTCGTAGATAGTCTGGGCCGGCAAAAACC CGGCTTATCGCCCCGTGTAGGAATGCAAGGTCACGGTCAATAATCGAACG ACCTTCGGCATGCGTGTACATGATGAGCACGCCTCACCCCCCCCCGTAGC CTGGGCGGGCGAAATCTCGGCATTGCAGGGATGCGAGGTCAATGGTCTAA CGACTACGGCATGCAGCATCATGAGTACACCCTCCCGTTCGAATCGTTCG AATGTTGGAATCGAATCCTTTTGCTGCTGCGGGGAAATCCCCTGCCTGAG TAGGTAATCGATCATCTCGTTGTTGACCATGTGTTGCGTGTCCTGTTCTG GTGTGGTGATTGTCGGCGTCTGGTTGGCGTAGCGGTGTGTGACCGTTCGG GGGTCTGTTGTCGAGCATGGACGCCTATTGGTTTGGTTTGTATCATTCCG CCGCGTTCCGAGAGAGCAACGTCTGTGAAGTGTGACAACACGAAAACATT GGGAAAGACAACTTAACCAACGGGTTAACGGTACAACAACAGAGTCGGGC CCGAGCCCCCCCCCCCTTCCCTCGATGCGCAACGCCCCCCACACAAAAAG ACAAAGTACTTGTGGGTGACAAGGCGGAAACCTGGAGAGCCTCCACCAAG TGTTGGTGATGTCTCAACTAGGATTAGAAATGTAAATTCTGCCAAGTTTC GGAGAGGGATGCGTGGTCAAACGGTGAAAAATGGTTTCCGGCCACACATG GAAGTTTATAAATATGTGATTTTCGGCAACTCATGAAGGAATACGTGAGC CCTCCCCCACCACCACCACCACCAGCCGGCTTTAAAAAGTGTCTGTAATG TGGTAGCTATGATATCTGGTTCATGTCTCGCCAAGGATCTCAATGGTCCC CCTCGCCTCCTGTGGCTCCCCTGCTCCAACCCGAAACGCCCCCAACGACG AACCCTTCCGTCAAAACATCAACATCAACATCGACAGGACATCGACTACG TGGGGCTTACTCAGAGCGGACGATTAGTCATCAAGCTGCCGAAATTGTTC GTGGAAGAGGTGAGCACAGGACGGGCCACAAGCATATAGCTCCCTCCAAT GACAGAGTTGCATCGATGCTCGCTTGGTGCTTCCGTGTGGTACGGGTTAT AGTACATACTCCCGCCATACTCAGAGCTGGGTGATGCACAATGTTCGTTC AGCGTTGGTCCGGCTACACCGTCTGCCTCGCGGGGGGCGTTGCCTAAGCG CAGGCGTTTTTTTCTCACTCGCACGGTGAACGAGTGGCCATCGGCGATCG GTCTTGTGGGAAGAACAACGCTCCGTCCTCTCGAGGACGCGTGGTCAACG ATCAAAAAGCTAAGGCATGCAAAACATGAGTATCCCCCACCACTACCGCT AACACCGCCAATGGTGTAGCAGCTATAGGCGAGTCCAGTAAAATAGCATC ACATACACTATCATTGTAACGCATGCAAGTACATGAGTATCCCCCCCGCC CCCACCAGGCGTTGCGCATCCAAAAGGCGTTGCTCCGTCGCCACGAAACG GTGACGCTCAGCACTACCCTGCAAGACGTGAGCGTGTACGTGTTGGCGCA CTGGGTCTTGGGCTTCCTGGACGATCAAAGAGCTATCACGAGGTACAGTG TGGCGACGGAGGGTGTGCGGAACGAAAGAGGCGGGTGACGTGTTTGTTTG TGTTTTTGTCTTTAGCATCAACCGCGCTAACCGGCTGACCAATGAAAATA TGTCGGTCTCAGTGCGGCTGATGACACGAAATGCTTCTCAAGGTCATGAA CTGGGACCCCGTGAGGGGACACCGTGGGGGAGTCTACGCTACTCTCAGGA TTAAGGACAGATACCGTAGCAACAACAGAAGAAAACGGCACGTGTGTGTG TGTCTGCGCACAGACGGCGGTCTACCAAACAGCGGTAGTAGTAGCAGCGC GGCGAATTAGAGAGCGGTGGATGGTTTGTCTCTGAAAGGGGAGCTTTTGT CACCCATGTGTTGGGTGTTTGTCTGTGTAAACAGCAGCAGCGCGGCAGGA GATGAGACAGACGCAGGAGGATGGTTAGCCTGCTCCGAATGGGGTTGACC CCCACTTGTTGAGTGTTTTCCGGCGGCCCCTAAGTACAGCGATTTCTGTG CGTGCGTGTGAGCTCTCGTGTGTGCTTGCCCCTGTCCGGGGGCCGACATA TGGCATGTCGCCGGCTGGTGGTACGTATGTACACAACCAGGGTACTCCTC GTGCAAGCCCTTCTATCGGGATGCGATTGGGGAGACTTGTGGAGTGGGTT TCCAGAAGCTAGGATGCGTCGGAAGGCTTTCTTCCCGTGTTGTGGTGTTG TCGTTCTCTCATTCCGCGTCGGACAGACATGTCGGACGTGCCGCCATGAG ATGAGCAGGAGAAAATGTCGAGATTTCCGTGGTTCCGCCGCTCTTTCCCC CCGGAGGCACTTCGTTCTGTGGCCGCTTTTACTGCTGTTGCGAATGAGGA CGACGGTGCTTATCTTATCGGTGCTGTCTTTGTCGCCGTTGGGTGCTGTC AGTGCACGGCCCGCCCCCGCACCCACGCCATCAGCAGCCATTTCTTCGAC TGTGTCGTAACTTTGTTCACGAACAAAAAAATCGAACCGTGTTCTTGTTG TTCCTCTTCGGCAGCGTTCAGAACGAGCTGGTGCCCGCCCTCGTGAGGAG ACAGTTCAGAAACTCAACCACGGGAGGTGAGCCCTTGACCAAGCGCCTTG GTTCGTTGGCCGGGGAGGCTTTGCGAGGCGATGCGATGGTCGCTCGCATG AGCAGGTGAGCAAAATAGTAAAGAAATGTCAGAGAAATTTATATTTTTTA GCGAGAATTGAGTAGGAGACCAAGAGGAGGGGGGGGCGGGGGGGCAAGGG GCCGGCCCACTCTACGCAAAGCCGCAGTACTTGGAGCTAAAACTAGTCGA TGGAGACGTATTGTTGCTGTCGTTTGTAGCTGTTTGCTCGTCGTACTGTA GCATCGTATGCCGGAAGGGCATGTACTCATGCGTTGATGCTGAGGAACGG GGGACTGCTGTCGGTCATACTAAATGTCTCGCTTTTGTTTGGCGAATCAC ACGCAGGGCGAGCTCCTCTCCCATCTCAATATCCTTCTATTGACAGTCAC ACGTGGAAAGTTACATGTATGAGACTGAGGGAGCCAACCCAGACATGCCC TCAGCAACTTTTTCTCGCGTATACCGCCTCCGTTATCTTGGCGGTTTCAA AATGAAAAAATATAAAAAAACAGCTGGAGGCCTAGCCCTGACGGAGACAC GGCGGACCCGGGAGAGGGCGCGCCCGGCGTGAGCGAGGTTCGGTGCTTCG CCCTGACCTTGAGGCACGGAGAGGCCTACTGCTCGCAGGCCAAGACTTTG GCGGCGTACTGCACCATCAACAGGGAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13405:112..3641+

>mRNA_E-fasciculatus_F_contig13405.2552.1 ID=mRNA_E-fasciculatus_F_contig13405.2552.1|Name=mRNA_E-fasciculatus_F_contig13405.2552.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1224bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13405:112..3641+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCTGCACGTATCGAAGCGTTCGGACGTTACAATGGTCGTTAAGGAGGA
GGCCCCCGTCAAGGACGCCAAGGGTCGCAAGACAGTGCGGCCCAAGCGGG
ACGAGGAGCAGCTGCACGTATCGAAGCGTTCGGACGTTACAATGGTCGTT
AAGGAGGAGGCCCCCGTCAAGGACGCCAAGGGTCGCAAGACAGTGCGGCC
CAAGCGGGACGAGGAGGACATCGACTACGTGGGGCTTACTCAGAGCGGAC
GATTAGTCATCAAGCTGCCGAAATTGTTCGTGGAAGAGGACATCGACTAC
GTGGGGCTTACTCAGAGCGGACGATTAGTCATCAAGCTGCCGAAATTGTT
CGTGGAAGAGGCGTTGCGCATCCAAAAGGCGTTGCTCCGTCGCCACGAAA
CGGTGACGCTCAGCACTACCCTGCAAGACGTGAGCGTGTACGTGTTGGCG
CACTGGGTCTTGGGCTTCCTGGACGATCAAAGAGCTATCACGAGGCGTTG
CGCATCCAAAAGGCGTTGCTCCGTCGCCACGAAACGGTGACGCTCAGCAC
TACCCTGCAAGACGTGAGCGTGTACGTGTTGGCGCACTGGGTCTTGGGCT
TCCTGGACGATCAAAGAGCTATCACGAGCGTTCAGAACGAGCTGGTGCCC
GCCCTCGTGAGGAGACAGTTCAGAAACTCAACCACGGGAGGTGAGCCCTT
GACCAAGCGCCTTGGTTCGTTGGCCGGGGAGGCTTTGCGAGGCGATGCGA
TGGTCGCTCGCATGAGCAGCGTTCAGAACGAGCTGGTGCCCGCCCTCGTG
AGGAGACAGTTCAGAAACTCAACCACGGGAGGTGAGCCCTTGACCAAGCG
CCTTGGTTCGTTGGCCGGGGAGGCTTTGCGAGGCGATGCGATGGTCGCTC
GCATGAGCAGCTGGAGGCCTAGCCCTGACGGAGACACGGCGGACCCGGGA
GAGGGCGCGCCCGGCGTGAGCGAGGTTCGGTGCTTCGCCCTGACCTTGAG
GCACGGAGAGGCCTACTGCTCGCAGGCCAAGACTTTGGCGGCGTACTGCA
CCATCAACAGGGAGGTGCTGGAGGCCTAGCCCTGACGGAGACACGGCGGA
CCCGGGAGAGGGCGCGCCCGGCGTGAGCGAGGTTCGGTGCTTCGCCCTGA
CCTTGAGGCACGGAGAGGCCTACTGCTCGCAGGCCAAGACTTTGGCGGCG
TACTGCACCATCAACAGGGAGGTG
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