mRNA_E-fasciculatus_F_contig13405.2552.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: D8LGC6_ECTSI (Eukaryotic translation initiation factor 2B gamma subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC6_ECTSI) HSP 1 Score: 389 bits (999), Expect = 2.680e-133 Identity = 197/204 (96.57%), Postives = 202/204 (99.02%), Query Frame = 1
Query: 1 QLHVSKRSDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLAGEALRGDAMVARMSSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
+LHVSKRSDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRN TTGGEPLTKR+GS+AGEALRGDAMVARMSSWRPSPDGDTADPGEG PGV+EVRCFALTLRHGEAYCSQAKTLAAYCTINRE+
Sbjct: 124 ELHVSKRSDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNPTTGGEPLTKRVGSVAGEALRGDAMVARMSSWRPSPDGDTADPGEGTPGVNEVRCFALTLRHGEAYCSQAKTLAAYCTINREL 327
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: A0A835YVP1_9STRA (Eukaryotic translation initiation factor 2B gamma subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP1_9STRA) HSP 1 Score: 132 bits (331), Expect = 7.520e-33 Identity = 88/219 (40.18%), Postives = 126/219 (57.53%), Query Frame = 1
Query: 7 HVSKRSDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTK----RLGSLAGEALRGDA------------MVARMSSWRPSPDG-DTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
H + + +TMV++EE D KG K RP+RD+ED+D++GLT GR+V+K P L VEEA+R+QKALLRRH +V++ T+L DV +YVL+ VL L++ R I S+Q+EL PALVRRQF T R+ +A A G M+ +++ + +P G A G+G GV V T G YC QA+TLA Y + +++
Sbjct: 126 HRRRGAALTMVLREEGLEVDKKG-KLGRPRRDDEDVDFIGLTPDGRVVMKAPLLDVEEAVRVQKALLRRHTSVSIGTSLMDVGLYVLSQSVLQHLEEHRFIGSLQDELAPALVRRQFAPPLPPAPSRTDQARGRISIIAPAASLGHGAPAPVAADYYNDMINKLNIAKGAPGGVAAAGAGDGGGGVCAV--VLRTAADGGGYCRQARTLAQYSGMTKDL 341
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: A0A5D6XWU8_9STRA (NTP_transferase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWU8_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.370e-19 Identity = 66/198 (33.33%), Postives = 104/198 (52.53%), Query Frame = 1
Query: 22 SDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQS-GRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLAGEALRGDAMVARMSSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
+ VTM++K E K R +P+R+++ ID VGL +S R+ + + + + + + K+LL+R V L + L D Y+ AHWV+ L +++ I S++ +L+P LVRRQFR E S+ +A+ ++ A +S + D D VRCFA TL AYC +A T+AAY I+ EV
Sbjct: 129 ASVTMLLKREPSAAALKARGE-KPRREKDMIDCVGLVESESRVALIAQAVHMNDDMYVSKSLLKRRTNVALHSDLYDAHFYIFAHWVIDLLLEKKYIASIKADLIPHLVRRQFRGPAALPE-------SVRAKAVSRQSLAASLSLATQAFDPDDV-----------VRCFAYTLPPN-AYCERADTIAAYRAIDAEV 306
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: M4BB89_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BB89_HYAAE) HSP 1 Score: 90.5 bits (223), Expect = 3.780e-19 Identity = 65/198 (32.83%), Postives = 100/198 (50.51%), Query Frame = 1
Query: 34 MVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQ-----SGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLAGEALRGDAMVARMSSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
MV+++EAPV+ +K + +P RD++ D GL + R+V+ + + E L + K+LL+R L T L D Y+ +HWVL L +++ I S++ +L+P LVRRQFR + E S+ +A A+ A MS D + VRCFA L AYC +A T+ AY ++ EV
Sbjct: 1 MVLRQEAPVRPSK-KPEKKPGRDKDMTDCFGLVECERNEENRVVLVSQAVHMNEHLDVAKSLLQRRSHFVLHTDLYDGHFYIFSHWVLDLLQEKKYIASIKADLIPHLVRRQFRGANVLPE-------SVRDKATSKQALAASMSLSEEQHDPEDL-----------VRCFAYVLP-SNAYCERADTIPAYRAMDEEV 178
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: A0A2D4CFE4_PYTIN (Translation initiation factor eIF-2B subunit gamma, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFE4_PYTIN) HSP 1 Score: 93.2 bits (230), Expect = 4.600e-19 Identity = 67/200 (33.50%), Postives = 102/200 (51.00%), Query Frame = 1
Query: 22 SDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLT-QSGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLA--GEALRGDAMVARMSSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
+ VTM+++ E P+ AKG K P+RD++ D +GL + R+V + +EE + I KAL +R TL T L D +Y+ +HWVL +L +++ I S++ +LVP LVRRQFR + + ++ + +L A + P D D D + VRCFA L Y +A T AAY + EV
Sbjct: 129 ASVTMLLRPERPLDKAKGEK---PRRDKDMTDCIGLVPKENRVVFLSQAVHLEEDIAIAKALTKRRPHFTLHTDLYDAHLYIFSHWVLDYLQEKKDIASIKADLVPRLVRRQFRGRAALSDAVREKAVNKQHLAASLSLTTTTASAADVAPRHDNDL-DNDSNSSHDDIVRCFAYLLPTN-GYAERADTTAAYNAMKDEV 323
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: A0A7S2S2G3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2G3_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 5.580e-19 Identity = 75/226 (33.19%), Postives = 112/226 (49.56%), Query Frame = 1
Query: 7 HVSKRSDVTMVVKEEAPVKDAKGRKTVRP-KRDEEDIDYVGLTQSGRLVIKLPKLFVEEALRIQKALLRRHET------VTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRN---STTGGEPLTKRLGSLAGE--ALRGDAMVARMSSW---RPSPDG-DTADPGEGAPGVSEVRCFALTLRHGE-------AYCS-QAKTLAAYCTINREV 612
H +D+T+++ +E P + KG+K +P KRDEEDI++VGL Q R++ K P + VEE L I K LL R V + L D VL+ WVL LD S++N+LVP L+RRQ + +++G R S AG G + R + P P D P + P + RCFAL + + + C+ +A T+ ++ +NREV
Sbjct: 159 HQRTDADLTILMVKEPPPQLEKGKKGNKPRKRDEEDIEFVGLAQQDRIIFKKPLVAVEEELTIPKTLLARTSLTGSGSKVHARSNLTDTQTLVLSRWVLELLDADDQFKSIKNDLVPYLIRRQLHSLSEASSGKASSVSRARSGAGSEPTAPGQPLPLRRTDSDGAMPRPRATDERAPKDNGPDLETCRCFALVVDRADPSALGPSSICTLRANTIHSFLEMNREV 384
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: A0A3F2RU43_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RU43_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 6.720e-19 Identity = 66/202 (32.67%), Postives = 102/202 (50.50%), Query Frame = 1
Query: 22 SDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQS-----GRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLAGEALRGDAMVARMSSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
+ VTM++K+E + AKG K P+RD++ D + L + R+V+ + + E L + K+LL+R L + L D Y+ +HWVL L +++ I S++ +LVP LVRRQFR G + L K S+ +A + A +S D + VRCFA L AYC +A T+ AY ++ EV
Sbjct: 60 ASVTMLLKQEETARKAKGEK---PRRDKDMTDCIALVEGQRDEENRVVLVSQAVHMNEDLYVAKSLLKRRSNFVLHSDLYDAHFYIFSHWVLDLLQEKKYIVSIKADLVPHLVRRQFR----GADALPK---SVREKATCKQELAASLSLAEEKHDPEDL-----------VRCFAYVLPKN-AYCERADTIPAYKAMDEEV 239
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: A0A485L011_9STRA (Aste57867_13374 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L011_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 2.690e-18 Identity = 72/213 (33.80%), Postives = 104/213 (48.83%), Query Frame = 1
Query: 4 LHVSKRSDVTMVVKEE---APVKDAKGRKTVRPKRDEEDIDYVGLTQSGRLVIKLPK-------LFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLAGEALRGDAMVARMSSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
LH + VTM++K+E APVK AK ++ +P+RD E ID VGL ++ V+ + + E L + ALL+R + L T L D VY+ +HWVL L +++ I SV+ +L+P LVRRQFR E + E LR VA S + G+ V +V + L AYC +A T AY + +EV
Sbjct: 124 LHRINDASVTMLLKQEVIEAPVKGAKSKE--KPRRDREMIDCVGLVEADSRVVHISHSIFANDDMDTSEDLEMPLALLKRRPRINLRTDLYDAHVYIFSHWVLDLLHEKKHIASVKADLIPHLVRRQFRGPQALAESVR--------EKLRSSQYVANRLS--------VSCRGKDEDDVMKVFAYVLP---PNAYCERADTKEAYNAMAKEV 315
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: G5AAU1_PHYSP (NTP_transferase domain-containing protein n=8 Tax=Peronosporaceae TaxID=4777 RepID=G5AAU1_PHYSP) HSP 1 Score: 90.9 bits (224), Expect = 2.720e-18 Identity = 66/203 (32.51%), Postives = 102/203 (50.25%), Query Frame = 1
Query: 22 SDVTMVVKEEAPVKD-AKGRKTVRPKRDEEDIDYVGLTQS-----GRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLAGEALRGDAMVARMSSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
+ VTM++++E P + AKG K P+RD++ D + L + R+V+ + + E L + K+LL+R L T L D Y+ +HWVL L +++ I S++ +LVP LVRRQFR + E + +R S A+ A +S D + VRCFA L AYC +A T+ AY ++ EV
Sbjct: 129 ASVTMLLRQEEPARTKAKGEK---PRRDKDMTDCIALVEGQRDEENRVVLVSQAVHMNEDLYVAKSLLKRRSNFVLHTDLYDGHFYIFSHWVLDLLQEKKYIASIKADLVPHLVRRQFRGAAALPESVRERATSK-------QALAASLSLSEEKHDPEDL-----------VRCFAYVLP-SNAYCERADTIPAYKAMDEEV 309
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Match: H3GX90_PHYRM (NTP_transferase domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=H3GX90_PHYRM) HSP 1 Score: 89.7 bits (221), Expect = 6.910e-18 Identity = 66/199 (33.17%), Postives = 100/199 (50.25%), Query Frame = 1
Query: 22 SDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQ--SGRLVIKLPKLFVEEALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNSTTGGEPLTKRLGSLAGEALRGDAMVARMSSWRPSPDGDTADPGEGAPGVSEVRCFALTLRHGEAYCSQAKTLAAYCTINREV 612
+ VTM++++E P KG K P+RD++ D + L + R+V+ + + E L + K+LL+R L T L D Y +HWVL L ++R I S++ +LVP LVRRQFR G + L + S+ +A + A +S D + VRCFA L AYC +A T+ AY ++ EV
Sbjct: 129 ASVTMLLRQEMPAHRLKGEK---PRRDKDMTDCIALVEHEENRVVLVSQAVHMNEELYVAKSLLKRRSNFVLHTDLYDGHFYFFSHWVLDLLQEKRYIASIKADLVPHLVRRQFR----GADALPE---SVRDKARSKQDLAASLSLAEEKHDPEDL-----------VRCFAYVLPPN-AYCERADTIPAYRAMDEEV 305 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13405.2552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13405.2552.1 >prot_E-fasciculatus_F_contig13405.2552.1 ID=prot_E-fasciculatus_F_contig13405.2552.1|Name=mRNA_E-fasciculatus_F_contig13405.2552.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=204bp QLHVSKRSDVTMVVKEEAPVKDAKGRKTVRPKRDEEDIDYVGLTQSGRLVback to top mRNA from alignment at E-fasciculatus_F_contig13405:112..3641+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13405.2552.1 ID=mRNA_E-fasciculatus_F_contig13405.2552.1|Name=mRNA_E-fasciculatus_F_contig13405.2552.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3530bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13405:112..3641+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13405:112..3641+ >mRNA_E-fasciculatus_F_contig13405.2552.1 ID=mRNA_E-fasciculatus_F_contig13405.2552.1|Name=mRNA_E-fasciculatus_F_contig13405.2552.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1224bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13405:112..3641+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |