mRNA_E-fasciculatus_F_contig13394.2542.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig13394.2542.1
Unique Name	mRNA_E-fasciculatus_F_contig13394.2542.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig13394.2542.1 vs. uniprot
Match: A0A6H5JG15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG15_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 3.170e-104
Identity = 257/285 (90.18%), Postives = 262/285 (91.93%), Query Frame = 1

Query:    1 EPLSPRAPASEALKQXXXXXXXXXXXXXVEQDEGIAPLAPPQPHSSTRPPPEADALSFEGSTEEVLRYTIVAKSYLIRSKSKKHGESRDASPIKSLFSPGGTERRVEEGGEEDVRHLTQELLALKTRYMASTQHWLKTDIVNDEELRMIRAQVFEAIQRKRSELHTEAAAVLRAER-LAESPRIQHSGGGNSKSSRGCGDGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ANRTIAMLVGTAEFLKFSRLLLLLSEAISVSNSVT 846
            +P SPRAPASE  KQXXXXXXXXXX   VE+DEGIAPLAP QP SS RPPPEADALSFEGSTEEVLRYTIVAKSYLIRSKSKKHGESR+ASPIKSLFSPGGTERRVEEGGEEDVRHLTQELL LK+RYMASTQHWLKTDIVNDEELRMIRAQVFEAIQRKRSELHTEAAAVLRAE  L ES R+QHSGG NSKSSRGCGD   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    ANRTIAML GTAEFLKFSRLLLLLSEAISVSNSVT
Sbjct:  836 DPESPRAPASEVPKQXXXXXXXXXX---VEKDEGIAPLAPAQPISSFRPPPEADALSFEGSTEEVLRYTIVAKSYLIRSKSKKHGESREASPIKSLFSPGGTERRVEEGGEEDVRHLTQELLDLKSRYMASTQHWLKTDIVNDEELRMIRAQVFEAIQRKRSELHTEAAAVLRAESVLEESLRLQHSGGSNSKSSRGCGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEEANRTIAMLEGTAEFLKFSRLLLLLSEAISVSNSVT 1117

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BLAST of mRNA_E-fasciculatus_F_contig13394.2542.1 vs. uniprot
Match: D7G4K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K0_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 1.320e-70
Identity = 184/213 (86.38%), Postives = 188/213 (88.26%), Query Frame = 1

Query:  220 SYLIRSKSKKHGESRDASPIKSLFSPGGTERRVEEGGEEDVRHLTQELLALKTRYMASTQHWLKTDIVNDEELRMIRAQVFEAIQRKRSELHTEAAAVLRAE-RLAESPRIQHSGGGNSKSSRGCGDGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---ANRTIAMLVGTAEFLKFSRLLLLLSEAISVSNSVT 846
            SYLIRSKSKKHGESR+ASPIKSLFSPGGTER+VEEGGEEDVRHLT+ELL LK+RYMASTQHWLKTDIVN EELRMIRAQVFEAIQRKRSELHTEAAAVLRAE RL ES RIQHSGG NSKSSRGC     XXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXX      ANRTIAML GTAEFLKFSRLLLLLSEAISVSNSVT
Sbjct:  644 SYLIRSKSKKHGESREASPIKSLFSPGGTERKVEEGGEEDVRHLTKELLDLKSRYMASTQHWLKTDIVNHEELRMIRAQVFEAIQRKRSELHTEAAAVLRAESRLEESLRIQHSGGSNSKSSRGCXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSGKDEXXXXXXXXXXXXXLREEEEANRTIAMLAGTAEFLKFSRLLLLLSEAISVSNSVT 856

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig13394.2542.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig13394.2542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JG15_9PHAE	3.170e-104	90.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G4K0_ECTSI	1.320e-70	86.38	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig13394	contig	E-fasciculatus_F_contig13394:68..3652 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	4
Model size	933
Cds size	933
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig13394.2542.1	prot_E-fasciculatus_F_contig13394.2542.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig13394 68..3652 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927839.430562-CDS-E-fasciculatus_F_contig13394:67..286	1622927839.430562-CDS-E-fasciculatus_F_contig13394:67..286	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig13394 68..286 +
1695995717.526704-CDS-E-fasciculatus_F_contig13394:67..286	1695995717.526704-CDS-E-fasciculatus_F_contig13394:67..286	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig13394 68..286 +
1622927839.441135-CDS-E-fasciculatus_F_contig13394:857..1018	1622927839.441135-CDS-E-fasciculatus_F_contig13394:857..1018	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig13394 858..1018 +
1695995717.5423071-CDS-E-fasciculatus_F_contig13394:857..1018	1695995717.5423071-CDS-E-fasciculatus_F_contig13394:857..1018	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig13394 858..1018 +
1622927839.4541023-CDS-E-fasciculatus_F_contig13394:2485..2632	1622927839.4541023-CDS-E-fasciculatus_F_contig13394:2485..2632	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig13394 2486..2632 +
1695995717.5502074-CDS-E-fasciculatus_F_contig13394:2485..2632	1695995717.5502074-CDS-E-fasciculatus_F_contig13394:2485..2632	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig13394 2486..2632 +
1622927839.4680142-CDS-E-fasciculatus_F_contig13394:3246..3652	1622927839.4680142-CDS-E-fasciculatus_F_contig13394:3246..3652	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig13394 3247..3652 +
1695995717.5585167-CDS-E-fasciculatus_F_contig13394:3246..3652	1695995717.5585167-CDS-E-fasciculatus_F_contig13394:3246..3652	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig13394 3247..3652 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig13394:68..3652+
coding sequence from alignment at E-fasciculatus_F_contig13394:68..3652+

protein sequence of mRNA_E-fasciculatus_F_contig13394.2542.1

>prot_E-fasciculatus_F_contig13394.2542.1 ID=prot_E-fasciculatus_F_contig13394.2542.1|Name=mRNA_E-fasciculatus_F_contig13394.2542.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=311bp
EPLSPRAPASEALKQQQQQQQQRPPEEEVEQDEGIAPLAPPQPHSSTRPP
PEADALSFEGSTEEVLRYTIVAKSYLIRSKSKKHGESRDASPIKSLFSPG
GTERRVEEGGEEDVRHLTQELLALKTRYMASTQHWLKTDIVNDEELRMIR
AQVFEAIQRKRSELHTEAAAVLRAERLAESPRIQHSGGGNSKSSRGCGDG
DSGGGGWGSSGGGGGESSAGNASTSGNDEIKAAGAVAAAAALREEEEANR
TIAMLVGTAEFLKFSRLLLLLSEAISVSNSVTSTAAAAAAAAAAAATDGP
ASTRRNSGGGG

mRNA from alignment at E-fasciculatus_F_contig13394:68..3652+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig13394.2542.1 ID=mRNA_E-fasciculatus_F_contig13394.2542.1|Name=mRNA_E-fasciculatus_F_contig13394.2542.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3585bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13394:68..3652+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAACCCCTCAGTCCTCGGGCGCCAGCATCGGAGGCCCTCAAGCAGCAGCA
GCAGCAGCAGCAACAAAGACCACCGGAAGAGGAAGTGGAGCAGGATGAAG
GAATCGCGCCCCTGGCACCCCCACAGCCCCACTCCTCGACCCGCCCGCCC
CCCGAAGCGGACGCTTTGTCGTTTGAGGGCTCCACGGAGGAAGTTCTTCG
GTATACCATCGTCGCCAAGGTCGGTCGGCTGGTCGGTCAGGGTCTACGAG
TAATGATGATGCACGGCTTGTTGTTGTTTGCCGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCGGTGGCGGTAGTTGTTGTGTTGATGTTGTTTTGGTTGTC
ATACCTCTGTGTAGTGTGTAGAGGGCTGGATACCAAAAATCGATATTTTT
TTTCTGCTCCCCCACACAGTTGTATCGGGTACGATTGTACTGTCAGCGGA
AGGTCGGGAAATCGACAATTAAGACTTGAGACATGAGCGGGGGTGCCTTA
GAATCAGTCATATTTTTGTATTGTGTTTTTAATTTCTCAAGGTCTGTCGA
CAACAAATCATGGACCGTGGTGTCGTATGCACCAAAGAACCTGGTGTGTC
GCTCGCAACAACAAAGTTAGCCCGCTCGCCGCTGCTGTGTTCTTGAGGCA
CATGGCGTTATCGTTGCTGATGCACGCTTGATATTGGTAGCGTTACCTGA
CGTATGTAGGTATCTCATTCGGAGGCGCATCTCATCGGCATCGTCGTCGT
CGTCGTTGCCTATGGTAATTCTTGTGTACCGTTTTGACAGAGCTATCTCA
TCCGGAGCAAGTCGAAGAAACACGGGGAGAGTCGCGACGCGTCCCCGATA
AAGAGCCTCTTCAGCCCAGGGGGCACGGAGCGGAGGGTGGAAGAGGGTGG
CGAAGAGGACGTGCGTCACCTCACCCAAGAGCTACTGGCCCTCAAGACCA
GGTGACTTGACTCGAAAGAGAGGGCAGCAGCGTTACGCCAGGGTAATTAC
GCCAGGGGGTCGCAGTGCGTGCTCGAAGCCCTAGGATATGCAATATTTGT
TCGGTCGCCGACAGCGTACACATGTCCGGGTCGACAGGATTTTACAGTGA
CTGACTCAATTCAAAAGAGCAGCAGCGTTACTCAGGAGGCTCGCGTTTGC
TTGCTCGAAGCCCGAAGATGTGCTTTCGGCCACCGCATCTTTGAACGATC
GTGGCGGGAAGGAAGCATTTGCAGACGGTGGCCGAAACAAGAAACAACGT
GGACCGCCTTCTCGAGAATAAAAAAAGTTATAGTATGCATATAGTAAGGC
GATAGAACAGGAAGACCCTAACCCTAACCCTAACCCTAACCCTAACCCTA
AACCCTAACCCTAACCCTAACCCTAAACCCTAACCCTAACCCTAACCCTA
ACCCTAACCCTAACCCTAACCCAACTTCCCCGAGTGCATGCGTTTATGAA
AGTCACTCGTGTTGCAAGTCCCACAAAAGCAAAAAAGAAATATGACAAAG
GGGCTCCGCGAAAATCGATCGTACCCCGCTTGGCCCCCCATGACAAAGGG
GCTCCGCGAAAATCGATCGTACCCCGCTTGGCCCCCCATGATGAGTTGCC
CTGTGACACCATCTGGTGCACACCTTTGTCACCGCTGGTGCTCCACACAC
AGATGGCTCTATGAAACCAACAGGATACCTCAAGCTTGTTGTGTTCTACA
CGCGTAGACATTTGCTTTGCCCTGATTTTGCTCTCAGCCTGCCAAATGCC
GTGCTATCGAAAGGGGAAGAGCTGCTGGTTCAAGCCCAGTTCGCAGCTGT
CAGCGCCGAACTTCACGCTGCTATACTGCTACAAGTATACACCTGCGAAG
GAGTTGACGAATTCGCTCGAAACTTCGGCAGAGTGGATAGCATAGGCATA
GGTAGCATTGAGGGGTTGGCCACTTTTTGGATCGCCACTACGAGGGTCGT
TCCAAGGAACTCTATTGCCTACACGGATAAAAAACACCCCATCTGTCTAC
CTCCAGTTTTGTTCGGGAATCTCCGGCAACATCCCCCGCAATTGGACCTT
CACCGCTCTATACACCTCCAAAAAACGATCCCGTCCAATTTGTTTTTGGC
ACCACGCTGTAGAGACATGCCTAAGGTTGCTTTAGAGGGTTGACCACTTT
TTGGATCGCCACTACAGCCGGAGTTGTTGACGAATAACGGCCTGTCCCAT
AGGAATCCGGCCACTGTGGGGGCTCCGCGCGTGATTGGTTCCTTGTTGTA
ATAATAAAAAAAAAATGCTTTTTGTGGGGACTTGCAACACGGGTGAAGTA
TGTTTAGTTGTTAGGAAAACACTGCGAGGGCTGTACCGAGCATTGTAACA
TTGTGCATCACCACCCCTCCCCTGCCTTGAAACCGCCTCTGTACCAAAAC
TGTATGCATACCACGCAGGTACATGGCGTCAACCCAGCACTGGCTCAAGA
CGGACATCGTGAACGATGAGGAGCTAAGGATGATCCGCGCCCAGGTGTTC
GAGGCCATCCAGAGGAAGCGAAGCGAGCTGCACACCGAGGCTGCGGCGGT
GTTGAGGGCAGAGAGGTGAGTGACAGTGACAGGCTCAAACAACCGAAACC
GCAACCGTAACCTCCATCCTGGAGCACTCTCAGACAGAGCGTACCAGCTG
CAGTCCCCCTGTTCCATCTACTTTGATCTACTAGTAGCAAGATCCGATCC
TCCGTACGTACCTTGCTGCGTTGTTCGAGAGGTGAGCAACCTACCCAAAG
GCAAATGGGTAGTCTTTGCTGTGTCTGTATGTAGTTTGTAAGATTATTGG
AGAGAGAGTGACTACCGGAGGGTCGTTGACCGCAATTAATATTCAATATT
CATAGTATAAACAACACGACACGTTTGGGTGGGGAAGAGGGCTGATTGTC
TTGGAAAGCACGAGCCGCCGATGACTGGGTTCAAAACGAACGCGAGCAGA
TATCCCTCCTCCCCCTCGCACTCTCACACCGATACACCGATACGGTCCAC
AACTCAGCTAGCTACGGTATACGAAAAGGAACAAGGTGGTTCCGTGGGTA
CTGTACATCCACGATCCACCTATCTCCGCCGTGATGGCACACTTTCGTCG
ATTCACTTGATTCACACGCGTCTCTCCTCCGTCGCGCCGACCCATATATG
CTTCCGTTGTCTCGCCGCAATGCATGTAGATTAGCGGAATCACCCCGAAT
CCAGCACAGCGGCGGCGGCAACAGCAAGAGCAGCAGGGGATGCGGAGACG
GTGACAGTGGGGGTGGAGGCTGGGGTAGCAGCGGCGGCGGCGGCGGGGAA
TCGTCCGCGGGCAATGCTTCGACGAGCGGCAACGATGAGATCAAGGCGGC
GGGCGCGGTTGCTGCTGCTGCGGCGCTGCGGGAAGAGGAAGAGGCGAACC
GCACCATCGCCATGCTGGTGGGGACGGCAGAATTCCTCAAGTTCAGCCGC
CTGCTGCTCCTGCTGAGCGAGGCCATCTCCGTCTCCAACTCGGTGACGTC
GACCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACAGATGGGC
CGGCTTCGACCCGCCGGAATTCCGGCGGCGGCGGC

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13394:68..3652+

>mRNA_E-fasciculatus_F_contig13394.2542.1 ID=mRNA_E-fasciculatus_F_contig13394.2542.1|Name=mRNA_E-fasciculatus_F_contig13394.2542.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1866bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13394:68..3652+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAACCCCTCAGTCCTCGGGCGCCAGCATCGGAGGCCCTCAAGCAGCAGCA
GCAGCAGCAGCAACAAAGACCACCGGAAGAGGAAGTGGAGCAGGATGAAG
GAATCGCGCCCCTGGCACCCCCACAGCCCCACTCCTCGACCCGCCCGCCC
CCCGAAGCGGACGCTTTGTCGTTTGAGGGCTCCACGGAGGAAGTTCTTCG
GTATACCATCGTCGCCAAGGAACCCCTCAGTCCTCGGGCGCCAGCATCGG
AGGCCCTCAAGCAGCAGCAGCAGCAGCAGCAACAAAGACCACCGGAAGAG
GAAGTGGAGCAGGATGAAGGAATCGCGCCCCTGGCACCCCCACAGCCCCA
CTCCTCGACCCGCCCGCCCCCCGAAGCGGACGCTTTGTCGTTTGAGGGCT
CCACGGAGGAAGTTCTTCGGTATACCATCGTCGCCAAGAGCTATCTCATC
CGGAGCAAGTCGAAGAAACACGGGGAGAGTCGCGACGCGTCCCCGATAAA
GAGCCTCTTCAGCCCAGGGGGCACGGAGCGGAGGGTGGAAGAGGGTGGCG
AAGAGGACGTGCGTCACCTCACCCAAGAGCTACTGGCCCTCAAGACCAGA
GCTATCTCATCCGGAGCAAGTCGAAGAAACACGGGGAGAGTCGCGACGCG
TCCCCGATAAAGAGCCTCTTCAGCCCAGGGGGCACGGAGCGGAGGGTGGA
AGAGGGTGGCGAAGAGGACGTGCGTCACCTCACCCAAGAGCTACTGGCCC
TCAAGACCAGGTACATGGCGTCAACCCAGCACTGGCTCAAGACGGACATC
GTGAACGATGAGGAGCTAAGGATGATCCGCGCCCAGGTGTTCGAGGCCAT
CCAGAGGAAGCGAAGCGAGCTGCACACCGAGGCTGCGGCGGTGTTGAGGG
CAGAGAGGTACATGGCGTCAACCCAGCACTGGCTCAAGACGGACATCGTG
AACGATGAGGAGCTAAGGATGATCCGCGCCCAGGTGTTCGAGGCCATCCA
GAGGAAGCGAAGCGAGCTGCACACCGAGGCTGCGGCGGTGTTGAGGGCAG
AGAGATTAGCGGAATCACCCCGAATCCAGCACAGCGGCGGCGGCAACAGC
AAGAGCAGCAGGGGATGCGGAGACGGTGACAGTGGGGGTGGAGGCTGGGG
TAGCAGCGGCGGCGGCGGCGGGGAATCGTCCGCGGGCAATGCTTCGACGA
GCGGCAACGATGAGATCAAGGCGGCGGGCGCGGTTGCTGCTGCTGCGGCG
CTGCGGGAAGAGGAAGAGGCGAACCGCACCATCGCCATGCTGGTGGGGAC
GGCAGAATTCCTCAAGTTCAGCCGCCTGCTGCTCCTGCTGAGCGAGGCCA
TCTCCGTCTCCAACTCGGTGACGTCGACCGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCGACAGATGGGCCGGCTTCGACCCGCCGGAATTCCGG
CGGCGGCGGCATTAGCGGAATCACCCCGAATCCAGCACAGCGGCGGCGGC
AACAGCAAGAGCAGCAGGGGATGCGGAGACGGTGACAGTGGGGGTGGAGG
CTGGGGTAGCAGCGGCGGCGGCGGCGGGGAATCGTCCGCGGGCAATGCTT
CGACGAGCGGCAACGATGAGATCAAGGCGGCGGGCGCGGTTGCTGCTGCT
GCGGCGCTGCGGGAAGAGGAAGAGGCGAACCGCACCATCGCCATGCTGGT
GGGGACGGCAGAATTCCTCAAGTTCAGCCGCCTGCTGCTCCTGCTGAGCG
AGGCCATCTCCGTCTCCAACTCGGTGACGTCGACCGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCGACAGATGGGCCGGCTTCGACCCGCCGGAA
TTCCGGCGGCGGCGGC