mRNA_E-fasciculatus_F_contig13386.2538.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13386.2538.1
Unique NamemRNA_E-fasciculatus_F_contig13386.2538.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13386.2538.1 vs. uniprot
Match: D7FVV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV0_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 7.830e-49
Identity = 137/201 (68.16%), Postives = 143/201 (71.14%), Query Frame = 1 
Query:   67 EGGEKSAARSKGERRNSRSRRTSAAESSDLSEDDGSMAVDRQYGNEGGNSSKMSTSVGKGRTSDRGKDKKKKQYGKRKQSESVDNGDNGGEKGARRRSERAKGI-KTSSXXXXRRKLSRSSERRSQRDGDTWRETKQGAAKAHEAKPQRQASRGVKTRGVSGAPSADDDSDHSAETTAAPPTAAVSPLRKLIRGFRGLKKK 666
            EGGEKSAARSKGER           ESSDLSED+GSM VD Q GN+GG+S  MST V K   SDRGKDKKK Q GK  Q  S D+G   GEK   RRSERAK   KTSS    RR LSRS ER SQRDGD  RETKQG AKA   K QR ASRGVKTRG SGAPSADDDSD SAET AAPPTAAVSP+R+L  GF GLKKK
Sbjct:  913 EGGEKSAARSKGERXXXXXXXXXXXESSDLSEDEGSMTVDGQSGNKGGSSPTMSTPVAKVHASDRGKDKKK-QDGKGTQLASADDG---GEK-VIRRSERAKADNKTSSS---RRTLSRSHERSSQRDGDRRRETKQGTAKAQGTKSQRHASRGVKTRGSSGAPSADDDSDRSAETKAAPPTAAVSPIRRLFGGFGGLKKK 1105
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BLAST of mRNA_E-fasciculatus_F_contig13386.2538.1 vs. uniprot
Match: A0A6H5KX11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX11_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.160e-21
Identity = 101/160 (63.12%), Postives = 108/160 (67.50%), Query Frame = 1 
Query:    1 SRRRSRGRDTSGSDKKRASTESEGGEKSAARSKGERRNSRSRRTSAAESSDLSEDDGSMAVDRQYGNEGGNSSKMSTSVGKGRTSDRGKDKKKKQYGKRKQSESVDNGDNGGEKGARRRSERAKGI-KTSSXXXXRRKLSRSSERRSQRDGDTWRETKQG 477
            SRRRSRGR TS S            EKSA RSKGERRNSRSRR SAAESS+LSED+ SM VD Q GN+GG S  MSTSV K R SDRGKDKKK Q GK KQ   +   D+GGEK   + SERAK   KTSS    RR +SRS ER SQRDG T RET QG
Sbjct:  963 SRRRSRGRGTSESYSLNXXXXXXS-EKSAVRSKGERRNSRSRRASAAESSNLSEDERSMTVDGQSGNKGGRSPTMSTSVVKVRVSDRGKDKKK-QDGKGKQ---LAPADDGGEK-VIQLSERAKADNKTSSS---RRTVSRSHERSSQRDGYTRRETNQG 1113
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13386.2538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVV0_ECTSI7.830e-4968.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX11_9PHAE1.160e-2163.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13386contigE-fasciculatus_F_contig13386:2746..3660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002240.1
Exons2
Model size672
Cds size672
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927839.0450735-CDS-E-fasciculatus_F_contig13386:2745..29431622927839.0450735-CDS-E-fasciculatus_F_contig13386:2745..2943Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13386 2746..2943 -
1695995717.3641124-CDS-E-fasciculatus_F_contig13386:2745..29431695995717.3641124-CDS-E-fasciculatus_F_contig13386:2745..2943Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13386 2746..2943 -
1622927839.1252904-CDS-E-fasciculatus_F_contig13386:3186..36601622927839.1252904-CDS-E-fasciculatus_F_contig13386:3186..3660Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13386 3187..3660 -
1695995717.3727205-CDS-E-fasciculatus_F_contig13386:3186..36601695995717.3727205-CDS-E-fasciculatus_F_contig13386:3186..3660Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13386 3187..3660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13386.2538.1prot_E-fasciculatus_F_contig13386.2538.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13386 2746..3660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13386.2538.1

>prot_E-fasciculatus_F_contig13386.2538.1 ID=prot_E-fasciculatus_F_contig13386.2538.1|Name=mRNA_E-fasciculatus_F_contig13386.2538.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=224bp
SRRRSRGRDTSGSDKKRASTESEGGEKSAARSKGERRNSRSRRTSAAESS
DLSEDDGSMAVDRQYGNEGGNSSKMSTSVGKGRTSDRGKDKKKKQYGKRK
QSESVDNGDNGGEKGARRRSERAKGIKTSSSSSSRRKLSRSSERRSQRDG
DTWRETKQGAAKAHEAKPQRQASRGVKTRGVSGAPSADDDSDHSAETTAA
PPTAAVSPLRKLIRGFRGLKKKG*
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mRNA from alignment at E-fasciculatus_F_contig13386:2746..3660-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13386.2538.1 ID=mRNA_E-fasciculatus_F_contig13386.2538.1|Name=mRNA_E-fasciculatus_F_contig13386.2538.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=915bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13386:2746..3660- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCCGAAGGAGATCGAGAGGGAGGGACACGTCGGGGTCCGATAAGAAGAG
AGCATCCACGGAGAGCGAGGGTGGCGAGAAGTCAGCAGCACGCTCGAAAG
GCGAGCGTCGAAACTCTCGGTCGAGACGAACGTCTGCCGCGGAAAGTAGC
GATCTTTCTGAGGACGACGGAAGCATGGCGGTTGACCGTCAGTATGGGAA
TGAAGGTGGAAACTCTTCCAAGATGTCTACGTCAGTTGGAAAGGGTCGCA
CCAGCGACCGTGGCAAAGACAAAAAGAAGAAACAATATGGAAAACGTAAA
CAGTCGGAATCTGTCGACAATGGAGACAATGGAGGGGAGAAAGGGGCACG
GCGGCGGTCCGAAAGGGCAAAGGGGATTAAGACCAGCAGCAGCAGCAGCA
GCAGGAGGAAATTATCGCGTTCCTCCGAGAGGCGCAGCCAACGAGACGGA
GACACGTGGAGGGAGACGAAACAGGTAGTACGCAAGAGCGCACATAAGTG
TTTTTCAATATGTCTTCTTGCTAGTACGCGCCACACCCACTCTGTCTGGT
GTTTCCGCCCTTCTAGAGGTCATTCCGCCTCAACAGCCCTTCCTTGCTCA
CTGCTTACTGTGTAAAGTGACAGGGTGAACCGATCACGGTTTCGAAGAGC
AACGTCGTTTGTTTGAGAATTGACCTTCGACCCTACCCCCCCACAAAACA
ACTTGACGTGACGAAAGGGCGCGGCGAAGGCCCACGAGGCCAAGCCGCAG
AGGCAGGCCAGCCGGGGTGTGAAAACCAGGGGCGTTTCCGGCGCACCAAG
TGCCGATGATGACAGCGATCACTCCGCCGAGACAACAGCAGCCCCGCCTA
CCGCCGCCGTGTCTCCGCTGAGGAAATTGATTCGTGGATTCAGAGGACTC
AAGAAGAAAGGATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13386:2746..3660-

>mRNA_E-fasciculatus_F_contig13386.2538.1 ID=mRNA_E-fasciculatus_F_contig13386.2538.1|Name=mRNA_E-fasciculatus_F_contig13386.2538.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1344bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13386:2746..3660- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCCGAAGGAGATCGAGAGGGAGGGACACGTCGGGGTCCGATAAGAAGAG
AGCATCCACGGAGAGCGAGGGTGGCGAGAAGTCAGCAGCACGCTCGAAAG
GCGAGCGTCGAAACTCTCGGTCGAGACGAACGTCTGCCGCGGAAAGTAGC
GATCTTTCTGAGGACGACGGAAGCATGGCGGTTGACCGTCAGTATGGGAA
TGAAGGTGGAAACTCTTCCAAGATGTCTACGTCAGTTGGAAAGGGTCGCA
CCAGCGACCGTGGCAAAGACAAAAAGAAGAAACAATATGGAAAACGTAAA
CAGTCGGAATCTGTCGACAATGGAGACAATGGAGGGGAGAAAGGGGCACG
GCGGCGGTCCGAAAGGGCAAAGGGGATTAAGACCAGCAGCAGCAGCAGCA
GCAGGAGGAAATTATCGCGTTCCTCCGAGAGGCGCAGCCAACGAGACGGA
GACACGTGGAGGGAGACGAAACAGAGCCGAAGGAGATCGAGAGGGAGGGA
CACGTCGGGGTCCGATAAGAAGAGAGCATCCACGGAGAGCGAGGGTGGCG
AGAAGTCAGCAGCACGCTCGAAAGGCGAGCGTCGAAACTCTCGGTCGAGA
CGAACGTCTGCCGCGGAAAGTAGCGATCTTTCTGAGGACGACGGAAGCAT
GGCGGTTGACCGTCAGTATGGGAATGAAGGTGGAAACTCTTCCAAGATGT
CTACGTCAGTTGGAAAGGGTCGCACCAGCGACCGTGGCAAAGACAAAAAG
AAGAAACAATATGGAAAACGTAAACAGTCGGAATCTGTCGACAATGGAGA
CAATGGAGGGGAGAAAGGGGCACGGCGGCGGTCCGAAAGGGCAAAGGGGA
TTAAGACCAGCAGCAGCAGCAGCAGCAGGAGGAAATTATCGCGTTCCTCC
GAGAGGCGCAGCCAACGAGACGGAGACACGTGGAGGGAGACGAAACAGGG
CGCGGCGAAGGCCCACGAGGCCAAGCCGCAGAGGCAGGCCAGCCGGGGTG
TGAAAACCAGGGGCGTTTCCGGCGCACCAAGTGCCGATGATGACAGCGAT
CACTCCGCCGAGACAACAGCAGCCCCGCCTACCGCCGCCGTGTCTCCGCT
GAGGAAATTGATTCGTGGATTCAGAGGACTCAAGAAGAAAGGATGAGGCG
CGGCGAAGGCCCACGAGGCCAAGCCGCAGAGGCAGGCCAGCCGGGGTGTG
AAAACCAGGGGCGTTTCCGGCGCACCAAGTGCCGATGATGACAGCGATCA
CTCCGCCGAGACAACAGCAGCCCCGCCTACCGCCGCCGTGTCTCCGCTGA
GGAAATTGATTCGTGGATTCAGAGGACTCAAGAAGAAAGGATGA
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