mRNA_E-fasciculatus_F_contig13385.2536.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13385.2536.1
Unique NamemRNA_E-fasciculatus_F_contig13385.2536.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13385.2536.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 2.410e-73
Identity = 243/279 (87.10%), Postives = 247/279 (88.53%), Query Frame = 1 
Query:    1 DSPGRGAKGVPATVDAAVEAAHGFFSVPAASHAADSREGGGXXXXXXXXXXXXXXXXXXXXX----EGARYDRRAEREHRFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDARXXXSRAPAGTRRERESSLRPSRPAIRTRTLSEDRLSWRDEGKQWSDLANPNPRPPLPHPFHAPDAAGAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRGMMDDNSSSAGWGNXXXXXXXXSMAAEAEAEVLGRSGHRGGGAGA 825
            DSPGRGAKGVPATVDAAVEAAHGFFSVPAASHAADSR+GG XXXXXXXXXXXXXXXXXXXXX    EGAR+ RR EREHRFD XXXXXXXXXXXXXXXXXXXX          XXX    SDAR   SRAPAGTRRERESSLRP+RPA+RTRTLSEDRLSWRDEGKQWSDLANPNPRPPLPHPFHAPDA GAPA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASRGMMDDNSSSAGWGNXXXXXXXXSMAAEAEAEVLGRSGHRG G GA
Sbjct: 1231 DSPGRGAKGVPATVDAAVEAAHGFFSVPAASHAADSRDGGXXXXXXXXXXXXXXXXXXXXXXXXXEEGARHGRRVEREHRFDSXXXXXXXXXXXXXXXXXXXXGEGGSRGRDRXXXGETRSDARKRRSRAPAGTRRERESSLRPTRPAVRTRTLSEDRLSWRDEGKQWSDLANPNPRPPLPHPFHAPDAVGAPAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ASRGMMDDNSSSAGWGNXXXXXXXXSMAAEAEAEVLGRSGHRGSGTGA 1508
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BLAST of mRNA_E-fasciculatus_F_contig13385.2536.1 vs. uniprot
Match: A0A6H5KJE7_9PHAE (DENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE7_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 1.800e-71
Identity = 231/278 (83.09%), Postives = 235/278 (84.53%), Query Frame = 1 
Query:    1 DSPGRGAKGVPATVDAAVEAAHGFFSVPAASHAADSREGGGXXXXXXXXXXXXXXXXXXXXX-----EGARYDRRAEREHRFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDARXXXSRAPAGTRRERESSLRPSRPAIRTRTLSEDRLSWRDEGKQWSDLANPNPRPPLPHPFHAPDAAGAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRGMMDDNSSSAGWGNXXXXXXXXSMAAEAEAEVLGRSGHRGGGA 819
            DSPGRGAKGVPATVDAAVEAAHGFFSVPAASHAADSR+GG XXXXXXXXXXXXXXXXXXXXX     EGAR+DRR EREHRFD XXXXXXXXXXXXXXX                      SDAR   SRAPAGTRRERESSLR +RPA+RTRTLSEDRLSWRDEGKQWSDLANPNPRPPLPHP HAPDA GAPA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ASRGMMDDNSSS GWGNXXXXXXX SMAAEAEAEVLGRSGHRG GA
Sbjct:  861 DSPGRGAKGVPATVDAAVEAAHGFFSVPAASHAADSRDGGXXXXXXXXXXXXXXXXXXXXXXXXXXEEGARHDRRVEREHRFDSXXXXXXXXXXXXXXXEKRQDGEGSSRGRDRVEGGETRSDARKRRSRAPAGTRRERESSLRATRPAVRTRTLSEDRLSWRDEGKQWSDLANPNPRPPLPHPLHAPDAVGAPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-ASRGMMDDNSSSTGWGNXXXXXXXESMAAEAEAEVLGRSGHRGSGA 1137
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13385.2536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYV2_ECTSI2.410e-7387.10PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KJE7_9PHAE1.800e-7183.09DENN domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13385contigE-fasciculatus_F_contig13385:1508..2355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size849
Cds size846
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927839.0026045-CDS-E-fasciculatus_F_contig13385:1507..23531622927839.0026045-CDS-E-fasciculatus_F_contig13385:1507..2353Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13385 1508..2353 +
1695995717.3565116-CDS-E-fasciculatus_F_contig13385:1507..23531695995717.3565116-CDS-E-fasciculatus_F_contig13385:1507..2353Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13385 1508..2353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13385.2536.1prot_E-fasciculatus_F_contig13385.2536.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13385 1508..2353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13385.2536.1

>prot_E-fasciculatus_F_contig13385.2536.1 ID=prot_E-fasciculatus_F_contig13385.2536.1|Name=mRNA_E-fasciculatus_F_contig13385.2536.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=282bp
DSPGRGAKGVPATVDAAVEAAHGFFSVPAASHAADSREGGGAGAGKPLQR
QQRERSASAENEEGARYDRRAEREHRFDSSSSAAAAAAAAALAAEKRQDE
DSGSRGRDRGEGGETRSDARKRRSRAPAGTRRERESSLRPSRPAIRTRTL
SEDRLSWRDEGKQWSDLANPNPRPPLPHPFHAPDAAGAPAAAAAAGGGTR
RTGGGSGGVSAASPPDSSNGTSDEKSRASRGMMDDNSSSAGWGNSSLAGW
GESMAAEAEAEVLGRSGHRGGGAGAAAGGGKG
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mRNA from alignment at E-fasciculatus_F_contig13385:1508..2355+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13385.2536.1 ID=mRNA_E-fasciculatus_F_contig13385.2536.1|Name=mRNA_E-fasciculatus_F_contig13385.2536.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=848bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13385:1508..2355+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACTCGCCGGGCAGGGGGGCTAAAGGGGTGCCGGCGACGGTGGACGCGGC
GGTCGAGGCGGCGCACGGGTTCTTCTCTGTCCCCGCGGCGTCGCACGCTG
CTGACTCGCGCGAGGGGGGCGGCGCTGGCGCCGGCAAGCCGCTCCAGCGG
CAGCAGAGAGAGCGGTCCGCGAGCGCGGAGAACGAGGAGGGCGCGCGGTA
CGACCGCAGGGCGGAGCGAGAGCACCGCTTCGATTCCTCCTCCTCCGCTG
CTGCCGCCGCCGCCGCTGCTGCCCTTGCTGCCGAGAAGAGGCAGGACGAG
GACAGCGGTAGCCGGGGTAGGGACCGGGGTGAGGGAGGAGAGACGCGGTC
GGACGCCAGGAAGCGTCGGTCGCGCGCCCCGGCCGGGACGAGGCGAGAGC
GCGAGTCCTCCCTGCGGCCGTCGAGGCCCGCCATCCGAACGCGGACCCTC
AGCGAAGACCGACTGTCTTGGAGGGACGAGGGCAAGCAGTGGAGTGACCT
GGCGAACCCTAACCCTCGGCCGCCCTTGCCCCACCCGTTTCATGCCCCGG
ACGCGGCGGGCGCGCCCGCCGCCGCCGCCGCCGCGGGGGGGGGAACGAGG
CGTACGGGGGGTGGCAGCGGCGGAGTCTCCGCCGCGTCTCCCCCGGATTC
GAGCAACGGCACCAGCGACGAGAAGAGCCGCGCGAGCCGTGGCATGATGG
ACGACAACTCTTCGAGCGCGGGGTGGGGCAACAGCAGCCTCGCCGGCTGG
GGGGAGAGCATGGCCGCCGAGGCGGAGGCCGAGGTCTTGGGGCGCAGCGG
CCACCGCGGGGGCGGCGCCGGGGCGGCCGCAGGTGGCGGAAAGGGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13385:1508..2355+

>mRNA_E-fasciculatus_F_contig13385.2536.1 ID=mRNA_E-fasciculatus_F_contig13385.2536.1|Name=mRNA_E-fasciculatus_F_contig13385.2536.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1692bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13385:1508..2355+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACTCGCCGGGCAGGGGGGCTAAAGGGGTGCCGGCGACGGTGGACGCGGC
GGTCGAGGCGGCGCACGGGTTCTTCTCTGTCCCCGCGGCGTCGCACGCTG
CTGACTCGCGCGAGGGGGGCGGCGCTGGCGCCGGCAAGCCGCTCCAGCGG
CAGCAGAGAGAGCGGTCCGCGAGCGCGGAGAACGAGGAGGGCGCGCGGTA
CGACCGCAGGGCGGAGCGAGAGCACCGCTTCGATTCCTCCTCCTCCGCTG
CTGCCGCCGCCGCCGCTGCTGCCCTTGCTGCCGAGAAGAGGCAGGACGAG
GACAGCGGTAGCCGGGGTAGGGACCGGGGTGAGGGAGGAGAGACGCGGTC
GGACGCCAGGAAGCGTCGGTCGCGCGCCCCGGCCGGGACGAGGCGAGAGC
GCGAGTCCTCCCTGCGGCCGTCGAGGCCCGCCATCCGAACGCGGACCCTC
AGCGAAGACCGACTGTCTTGGAGGGACGAGGGCAAGCAGTGGAGTGACCT
GGCGAACCCTAACCCTCGGCCGCCCTTGCCCCACCCGTTTCATGCCCCGG
ACGCGGCGGGCGCGCCCGCCGCCGCCGCCGCCGCGGGGGGGGGAACGAGG
CGTACGGGGGGTGGCAGCGGCGGAGTCTCCGCCGCGTCTCCCCCGGATTC
GAGCAACGGCACCAGCGACGAGAAGAGCCGCGCGAGCCGTGGCATGATGG
ACGACAACTCTTCGAGCGCGGGGTGGGGCAACAGCAGCCTCGCCGGCTGG
GGGGAGAGCATGGCCGCCGAGGCGGAGGCCGAGGTCTTGGGGCGCAGCGG
CCACCGCGGGGGCGGCGCCGGGGCGGCCGCAGGTGGCGGAAAGGGGGACT
CGCCGGGCAGGGGGGCTAAAGGGGTGCCGGCGACGGTGGACGCGGCGGTC
GAGGCGGCGCACGGGTTCTTCTCTGTCCCCGCGGCGTCGCACGCTGCTGA
CTCGCGCGAGGGGGGCGGCGCTGGCGCCGGCAAGCCGCTCCAGCGGCAGC
AGAGAGAGCGGTCCGCGAGCGCGGAGAACGAGGAGGGCGCGCGGTACGAC
CGCAGGGCGGAGCGAGAGCACCGCTTCGATTCCTCCTCCTCCGCTGCTGC
CGCCGCCGCCGCTGCTGCCCTTGCTGCCGAGAAGAGGCAGGACGAGGACA
GCGGTAGCCGGGGTAGGGACCGGGGTGAGGGAGGAGAGACGCGGTCGGAC
GCCAGGAAGCGTCGGTCGCGCGCCCCGGCCGGGACGAGGCGAGAGCGCGA
GTCCTCCCTGCGGCCGTCGAGGCCCGCCATCCGAACGCGGACCCTCAGCG
AAGACCGACTGTCTTGGAGGGACGAGGGCAAGCAGTGGAGTGACCTGGCG
AACCCTAACCCTCGGCCGCCCTTGCCCCACCCGTTTCATGCCCCGGACGC
GGCGGGCGCGCCCGCCGCCGCCGCCGCCGCGGGGGGGGGAACGAGGCGTA
CGGGGGGTGGCAGCGGCGGAGTCTCCGCCGCGTCTCCCCCGGATTCGAGC
AACGGCACCAGCGACGAGAAGAGCCGCGCGAGCCGTGGCATGATGGACGA
CAACTCTTCGAGCGCGGGGTGGGGCAACAGCAGCCTCGCCGGCTGGGGGG
AGAGCATGGCCGCCGAGGCGGAGGCCGAGGTCTTGGGGCGCAGCGGCCAC
CGCGGGGGCGGCGCCGGGGCGGCCGCAGGTGGCGGAAAGGGG
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