mRNA_E-fasciculatus_F_contig13385.2535.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13385.2535.1
Unique NamemRNA_E-fasciculatus_F_contig13385.2535.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13385.2535.1 vs. uniprot
Match: A0A6H5KJE7_9PHAE (DENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE7_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 5.900e-41
Identity = 122/141 (86.52%), Postives = 122/141 (86.52%), Query Frame = 1 
Query:    7 AAENAAPVAKSKPQWGWGAGKSLFGKRAAVEVKRSGVTEPEAQVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKAGDTATTTKGQTGGRRLATDIGGTYREPGGERGRGTRSAAEQRSGLDRNDRR 429
            AAENAAPVAKSKP WGWGAGKSLFGKRAAVEVKRSGV EPEAQ   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             AGDTAT TKGQTGGRRLATDIGGTYREPGGERGRGTRSAAEQRSGLDRNDRR
Sbjct:  702 AAENAAPVAKSKPPWGWGAGKSLFGKRAAVEVKRSGVAEPEAQAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQSVSNP---TNAGDTATITKGQTGGRRLATDIGGTYREPGGERGRGTRSAAEQRSGLDRNDRR 839
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BLAST of mRNA_E-fasciculatus_F_contig13385.2535.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.010e-37
Identity = 128/141 (90.78%), Postives = 128/141 (90.78%), Query Frame = 1 
Query:    7 AAENAAPVAKSKPQWGWGAGKSLFGKRAAVEVKRSGVTEPEAQVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKAGDTATTTKGQTGGRRLATDIGGTYREPGGERGRGTRSAAEQRSGLDRNDRR 429
            AAENAAPVAKSKPQWGWGAGKSLFGKRAAVEVKRSGV EPEAQ  GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          TKGQTGGRRLATDIGGTYREPGGERGRGTRSAAEQRSGLDRNDRR
Sbjct: 1074 AAENAAPVAKSKPQWGWGAGKSLFGKRAAVEVKRSGVAEPEAQAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XTKGQTGGRRLATDIGGTYREPGGERGRGTRSAAEQRSGLDRNDRR 1209
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13385.2535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJE7_9PHAE5.900e-4186.52DENN domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FYV2_ECTSI1.010e-3790.78PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13385contigE-fasciculatus_F_contig13385:1016..1445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionDENN domain
Ec32 orthologEc-19_002600.3
Hectar predicted targeting categoryother localisation
Exons1
Model size431
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927838.9649234-CDS-E-fasciculatus_F_contig13385:1015..14441622927838.9649234-CDS-E-fasciculatus_F_contig13385:1015..1444Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13385 1016..1444 +
1695995717.341585-CDS-E-fasciculatus_F_contig13385:1015..14441695995717.341585-CDS-E-fasciculatus_F_contig13385:1015..1444Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13385 1016..1444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13385.2535.1prot_E-fasciculatus_F_contig13385.2535.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13385 1016..1444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13385.2535.1

>prot_E-fasciculatus_F_contig13385.2535.1 ID=prot_E-fasciculatus_F_contig13385.2535.1|Name=mRNA_E-fasciculatus_F_contig13385.2535.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=143bp
AAAAENAAPVAKSKPQWGWGAGKSLFGKRAAVEVKRSGVTEPEAQVAGGG
GGGGGGGGHQSASATTGRKSSTAAAAAAAGGAAQAASHAAKAGDTATTTK
GQTGGRRLATDIGGTYREPGGERGRGTRSAAEQRSGLDRNDRR
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mRNA from alignment at E-fasciculatus_F_contig13385:1016..1445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13385.2535.1 ID=mRNA_E-fasciculatus_F_contig13385.2535.1|Name=mRNA_E-fasciculatus_F_contig13385.2535.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=430bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13385:1016..1445+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGCTGCTGCGGAGAACGCCGCTCCCGTCGCGAAGAGCAAGCCGCAGTG
GGGGTGGGGCGCAGGGAAGTCTCTCTTCGGGAAGAGGGCTGCCGTGGAGG
TAAAGCGGAGCGGTGTCACGGAACCGGAGGCTCAGGTCGCCGGCGGCGGC
GGCGGCGGCGGCGGTGGCGGTGGCCACCAGAGTGCTTCGGCCACGACCGG
TAGGAAGTCAAGCACCGCAGCGGCCGCGGCGGCCGCAGGAGGGGCAGCCC
AGGCCGCGTCTCACGCTGCCAAGGCCGGAGACACCGCCACCACCACCAAG
GGCCAGACGGGAGGCCGCCGGCTGGCGACCGACATCGGTGGCACGTACCG
AGAGCCCGGAGGCGAAAGGGGGCGCGGGACGCGGTCGGCCGCAGAGCAGC
GGTCAGGCCTGGACCGGAACGATCGCCGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13385:1016..1445+

>mRNA_E-fasciculatus_F_contig13385.2535.1 ID=mRNA_E-fasciculatus_F_contig13385.2535.1|Name=mRNA_E-fasciculatus_F_contig13385.2535.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=858bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13385:1016..1445+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGCTGCTGCGGAGAACGCCGCTCCCGTCGCGAAGAGCAAGCCGCAGTG
GGGGTGGGGCGCAGGGAAGTCTCTCTTCGGGAAGAGGGCTGCCGTGGAGG
TAAAGCGGAGCGGTGTCACGGAACCGGAGGCTCAGGTCGCCGGCGGCGGC
GGCGGCGGCGGCGGTGGCGGTGGCCACCAGAGTGCTTCGGCCACGACCGG
TAGGAAGTCAAGCACCGCAGCGGCCGCGGCGGCCGCAGGAGGGGCAGCCC
AGGCCGCGTCTCACGCTGCCAAGGCCGGAGACACCGCCACCACCACCAAG
GGCCAGACGGGAGGCCGCCGGCTGGCGACCGACATCGGTGGCACGTACCG
AGAGCCCGGAGGCGAAAGGGGGCGCGGGACGCGGTCGGCCGCAGAGCAGC
GGTCAGGCCTGGACCGGAACGATCGCCGGGCGGCTGCTGCGGAGAACGCC
GCTCCCGTCGCGAAGAGCAAGCCGCAGTGGGGGTGGGGCGCAGGGAAGTC
TCTCTTCGGGAAGAGGGCTGCCGTGGAGGTAAAGCGGAGCGGTGTCACGG
AACCGGAGGCTCAGGTCGCCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGT
GGCCACCAGAGTGCTTCGGCCACGACCGGTAGGAAGTCAAGCACCGCAGC
GGCCGCGGCGGCCGCAGGAGGGGCAGCCCAGGCCGCGTCTCACGCTGCCA
AGGCCGGAGACACCGCCACCACCACCAAGGGCCAGACGGGAGGCCGCCGG
CTGGCGACCGACATCGGTGGCACGTACCGAGAGCCCGGAGGCGAAAGGGG
GCGCGGGACGCGGTCGGCCGCAGAGCAGCGGTCAGGCCTGGACCGGAACG
ATCGCCGG
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