mRNA_E-fasciculatus_F_contig13370.2526.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13370.2526.1
Unique NamemRNA_E-fasciculatus_F_contig13370.2526.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13370.2526.1 vs. uniprot
Match: A0A6H5KJB1_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJB1_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 6.010e-36
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 GRAGVPMEVMGLMLGHFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPEV 189
            GRAGVPMEVMGLMLGHFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPE+
Sbjct:   45 GRAGVPMEVMGLMLGHFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPEM 107
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BLAST of mRNA_E-fasciculatus_F_contig13370.2526.1 vs. uniprot
Match: A0A7S4BWN7_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BWN7_CHRCT)

HSP 1 Score: 125 bits (314), Expect = 1.410e-34
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1 
Query:    1 GRAGVPMEVMGLMLGHFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPEV 189
            GRAGVPMEVMGLMLG FVDDYTV C+DVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPE+
Sbjct:  101 GRAGVPMEVMGLMLGEFVDDYTVKCVDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPEM 163
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BLAST of mRNA_E-fasciculatus_F_contig13370.2526.1 vs. uniprot
Match: A0A7S1FXH8_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FXH8_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.780e-34
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:    1 GRAGVPMEVMGLMLGHFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPEV 189
            GRAGVPMEVMGLMLG FVDDYT+NC+DVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPE+
Sbjct:   43 GRAGVPMEVMGLMLGQFVDDYTINCVDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPEM 105
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BLAST of mRNA_E-fasciculatus_F_contig13370.2526.1 vs. uniprot
Match: A0A8J2SQC4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SQC4_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.960e-34
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:    1 GRAGVPMEVMGLMLGHFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPEV 189
            GRAGVPMEVMGLMLG F+DDYT+NC+DVFAMPQSGTGVSVEAVDPVFQTKML+MLKQTGRPE+
Sbjct:   46 GRAGVPMEVMGLMLGQFIDDYTINCVDVFAMPQSGTGVSVEAVDPVFQTKMLEMLKQTGRPEM 108
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BLAST of mRNA_E-fasciculatus_F_contig13370.2526.1 vs. uniprot
Match: A0A0A9Z1F3_LYGHE (26S proteasome non-ATPase regulatory subunit 14 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z1F3_LYGHE)

HSP 1 Score: 122 bits (305), Expect = 2.580e-34
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    1 GRAGVPMEVMGLMLGHFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPEV 189
            GRAGVPMEVMGLMLG FVDDYTV  IDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPE+
Sbjct:   61 GRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPEM 123
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BLAST of mRNA_E-fasciculatus_F_contig13370.2526.1 vs. uniprot
Match: A0A6A5HCD8_CAERE (MPN domain-containing protein n=1 Tax=Caenorhabditis remanei TaxID=31234 RepID=A0A6A5HCD8_CAERE)

HSP 1 Score: 120 bits (302), Expect = 3.970e-34
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    1 GRAGVPMEVMGLMLGHFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPEV 189
            GRAGVPMEVMGLMLG FVDDYTVN IDVFAMPQSGTGVSVEAVDPVFQ KMLDML+QTGRPE+
Sbjct:   47 GRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLEQTGRPEM 109
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BLAST of mRNA_E-fasciculatus_F_contig13370.2526.1 vs. uniprot
Match: M4BXY4_HYAAE (MPN domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXY4_HYAAE)

HSP 1 Score: 121 bits (303), Expect = 5.850e-34
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    1 GRAGVPMEVMGLMLGHFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPEV 189
            GRAGVPMEVMGLMLG FVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQ KML+MLKQTGR E+
Sbjct:   47 GRAGVPMEVMGLMLGEFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQMKMLEMLKQTGRAEM 109
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BLAST of mRNA_E-fasciculatus_F_contig13370.2526.1 vs. uniprot
Match: A0A7R8WSB0_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WSB0_9CRUS)

HSP 1 Score: 120 bits (300), Expect = 8.020e-34
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    1 GRAGVPMEVMGLMLGHFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPEV 189
            GRAGVPMEVMGLMLG FVDDYTV  IDVFAMPQSGTGVSVEAVDPVFQ KMLDMLKQTGRPE+
Sbjct:   44 GRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEM 106
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BLAST of mRNA_E-fasciculatus_F_contig13370.2526.1 vs. uniprot
Match: R1F4L3_EMIHU (MPN domain-containing protein n=2 Tax=Isochrysidales TaxID=73020 RepID=R1F4L3_EMIHU)

HSP 1 Score: 125 bits (314), Expect = 1.030e-33
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1 
Query:    1 GRAGVPMEVMGLMLGHFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPEV 189
            GRAGVPMEVMGLMLG FVDDYTV C+DVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPE+
Sbjct:   45 GRAGVPMEVMGLMLGEFVDDYTVKCVDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPEM 107
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13370.2526.1 vs. uniprot
Match: A0A7S3ZUX7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUX7_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.490e-33
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:    1 GRAGVPMEVMGLMLGHFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPEV 189
            GRAGVPMEVMGLMLG F+DDYT+NC+DVFAMPQSGTGVSVEAVDPVFQTKML+MLKQTGRPE+
Sbjct:   63 GRAGVPMEVMGLMLGQFIDDYTINCVDVFAMPQSGTGVSVEAVDPVFQTKMLEMLKQTGRPEM 125
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13370.2526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJB1_9PHAE6.010e-3698.41MPN domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S4BWN7_CHRCT1.410e-3493.65Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S1FXH8_9STRA1.780e-3493.65Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
A0A8J2SQC4_9STRA1.960e-3490.48Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0A9Z1F3_LYGHE2.580e-3493.6526S proteasome non-ATPase regulatory subunit 14 (F... [more]
A0A6A5HCD8_CAERE3.970e-3492.06MPN domain-containing protein n=1 Tax=Caenorhabdit... [more]
M4BXY4_HYAAE5.850e-3492.06MPN domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A7R8WSB0_9CRUS8.020e-3492.06Hypothetical protein (Fragment) n=1 Tax=Cyprideis ... [more]
R1F4L3_EMIHU1.030e-3393.65MPN domain-containing protein n=2 Tax=Isochrysidal... [more]
A0A7S3ZUX7_9STRA1.490e-3390.48Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13370contigE-fasciculatus_F_contig13370:3461..3652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue2.8e-24
Seed eggNOG ortholog2880.D7FTN9
Preferred namePSMD14
KEGG koko:K03030
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000266,GO:0000502,GO:0000724,GO:0000725,GO:0000726,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004175,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0005838,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006974,GO:0006996,GO:0007005,GO:0007031,GO:0007088,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008237,GO:0008541,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010604,GO:0010638,GO:0010950,GO:0010952,GO:0010965,GO:0012505,GO:0016043,GO:0016192,GO:0016504,GO:0016559,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019941,GO:0022607,GO:0022624,GO:0030071,GO:0030141,GO:0030162,GO:0030163,GO:0030234,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032268,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034399,GO:0034515,GO:0034622,GO:0034641,GO:0034774,GO:0036211,GO:0036230,GO:0036459,GO:0042119,GO:0042176,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046483,GO:0046903,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060205,GO:0060255,GO:0061133,GO:0061134,GO:0061135,GO:0061136,GO:0061578,GO:0062033,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070536,GO:0070628,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090304,GO:0097708,GO:0098772,GO:0099503,GO:0101002,GO:0101005,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902906,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.metallopeptidase activity
EggNOG OGsCOG1310@1,KOG1555@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01002,ko03051,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size192
Cds size174
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927837.5128262-UTR-E-fasciculatus_F_contig13370:3460..34781622927837.5128262-UTR-E-fasciculatus_F_contig13370:3460..3478Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13370 3461..3478 +
1695995716.7513022-UTR-E-fasciculatus_F_contig13370:3460..34781695995716.7513022-UTR-E-fasciculatus_F_contig13370:3460..3478Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13370 3461..3478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927837.524585-CDS-E-fasciculatus_F_contig13370:3478..36521622927837.524585-CDS-E-fasciculatus_F_contig13370:3478..3652Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13370 3479..3652 +
1695995716.7640939-CDS-E-fasciculatus_F_contig13370:3478..36521695995716.7640939-CDS-E-fasciculatus_F_contig13370:3478..3652Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13370 3479..3652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13370.2526.1prot_E-fasciculatus_F_contig13370.2526.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13370 3479..3652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13370.2526.1

>prot_E-fasciculatus_F_contig13370.2526.1 ID=prot_E-fasciculatus_F_contig13370.2526.1|Name=mRNA_E-fasciculatus_F_contig13370.2526.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=58bp
MEVMGLMLGHFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLK
QTGRPEV*
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mRNA from alignment at E-fasciculatus_F_contig13370:3461..3652+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13370.2526.1 ID=mRNA_E-fasciculatus_F_contig13370.2526.1|Name=mRNA_E-fasciculatus_F_contig13370.2526.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=192bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13370:3461..3652+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGCGAGCGGGCGTGCCGATGGAGGTGATGGGGCTAATGCTGGGGCACTT
CGTGGACGACTACACGGTGAACTGTATCGACGTGTTCGCGATGCCGCAGT
CGGGGACCGGCGTCAGCGTCGAGGCCGTCGACCCGGTGTTCCAGACCAAG
ATGCTCGACATGCTCAAGCAGACGGGGCGGCCGGAGGTATAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13370:3461..3652+

>mRNA_E-fasciculatus_F_contig13370.2526.1 ID=mRNA_E-fasciculatus_F_contig13370.2526.1|Name=mRNA_E-fasciculatus_F_contig13370.2526.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=348bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13370:3461..3652+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGTGATGGGGCTAATGCTGGGGCACTTCGTGGACGACTACACGGT
GAACTGTATCGACGTGTTCGCGATGCCGCAGTCGGGGACCGGCGTCAGCG
TCGAGGCCGTCGACCCGGTGTTCCAGACCAAGATGCTCGACATGCTCAAG
CAGACGGGGCGGCCGGAGGTATAAATGGAGGTGATGGGGCTAATGCTGGG
GCACTTCGTGGACGACTACACGGTGAACTGTATCGACGTGTTCGCGATGC
CGCAGTCGGGGACCGGCGTCAGCGTCGAGGCCGTCGACCCGGTGTTCCAG
ACCAAGATGCTCGACATGCTCAAGCAGACGGGGCGGCCGGAGGTATAA
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