mRNA_E-fasciculatus_F_contig13359.2519.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13359.2519.1
Unique NamemRNA_E-fasciculatus_F_contig13359.2519.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13359.2519.1 vs. uniprot
Match: D7FQP7_ECTSI (S-layer domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP7_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.050e-18
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:   88 LACGTCGGPQCASKKRRGLHCCIDDIIQTCDPCSRPGAQAPCIID 222
            LACGTCGGP+CAS KR GL CCIDDII+TCDPC+RPG + PC+ID
Sbjct:    2 LACGTCGGPECASNKRDGLDCCIDDIIRTCDPCARPGTRPPCVID 46
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13359.2519.1 vs. uniprot
Match: D7FJ60_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ60_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 6.810e-5
Identity = 28/59 (47.46%), Postives = 31/59 (52.54%), Query Frame = 1 
Query:   58 QNGNGTVCCPLACGTCGGPQCASKK-RRGLH---CCIDDIIQTCDPCSRPGAQAPCIID 222
            ++ NG VCCP ACG CGG  C       GL    CC  DII +   CS     APCIID
Sbjct:   60 ESANGDVCCPTACGFCGGEACTEAAVNAGLDDGDCCFGDIIVSGASCSE-NQMAPCIID 117
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13359.2519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQP7_ECTSI1.050e-1877.78S-layer domain-containing protein n=1 Tax=Ectocarp... [more]
D7FJ60_ECTSI6.810e-547.46WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13359contigE-fasciculatus_F_contig13359:1630..3670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionpB602L
Ec32 orthologEc-03_005390.3
Exons3
Model size270
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13359.2519.1prot_E-fasciculatus_F_contig13359.2519.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13359 1630..3670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927836.8684864-CDS-E-fasciculatus_F_contig13359:1629..17161622927836.8684864-CDS-E-fasciculatus_F_contig13359:1629..1716Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13359 1630..1716 +
1695995716.368468-CDS-E-fasciculatus_F_contig13359:1629..17161695995716.368468-CDS-E-fasciculatus_F_contig13359:1629..1716Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13359 1630..1716 +
1622927836.8793807-CDS-E-fasciculatus_F_contig13359:1936..20721622927836.8793807-CDS-E-fasciculatus_F_contig13359:1936..2072Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13359 1937..2072 +
1695995716.3766422-CDS-E-fasciculatus_F_contig13359:1936..20721695995716.3766422-CDS-E-fasciculatus_F_contig13359:1936..2072Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13359 1937..2072 +
1622927836.8982172-CDS-E-fasciculatus_F_contig13359:3623..36701622927836.8982172-CDS-E-fasciculatus_F_contig13359:3623..3670Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13359 3624..3670 +
1695995716.384917-CDS-E-fasciculatus_F_contig13359:3623..36701695995716.384917-CDS-E-fasciculatus_F_contig13359:3623..3670Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13359 3624..3670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13359.2519.1

>prot_E-fasciculatus_F_contig13359.2519.1 ID=prot_E-fasciculatus_F_contig13359.2519.1|Name=mRNA_E-fasciculatus_F_contig13359.2519.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=90bp
TPAQPTCAPYHPGMQGNVGQNGNGTVCCPLACGTCGGPQCASKKRRGLHC
CIDDIIQTCDPCSRPGAQAPCIIDAETGPTPAPTTAPTTA
back to top

mRNA from alignment at E-fasciculatus_F_contig13359:1630..3670+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13359.2519.1 ID=mRNA_E-fasciculatus_F_contig13359.2519.1|Name=mRNA_E-fasciculatus_F_contig13359.2519.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2041bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13359:1630..3670+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACACCGGCCCAACCGACGTGCGCCCCCTACCACCCGGGCATGCAAGGAAA
CGTCGGCCAGAACGGCAATGGCACAGTCTGCTGCCCGGTGAGGCTGCAGC
CCCTATCTGAGTGTTGCACAATGTCAAGCTGCAGGCCAATGGTGACGGGT
CAAGGCAGTCCACTCGCAAACTCGCTGCTTCATTTGCATGATTAACTTGT
GGATCGCTTGGAATCCTTCGTTGCTTACCTAAGGGCCACTTCGTTGCTAT
CGACACCTCTTACTCGCGCCGCCTTTCGCGTGCTCGAATACGCGTTTCTG
CCAACAGCTCGCGTGCGGCACGTGCGGTGGCCCACAATGTGCCTCGAAGA
AGCGCCGCGGACTCCACTGTTGCATCGATGACATAATCCAAACGTGCGAC
CCGTGCTCTAGACCAGGCGCCCAGGCCCCGTGCATCATCGACGGTGAGTT
GTGCCATCGCAAACATCACAACCAAACAACGAAGGGAATTGATGCGAACT
GCCAAGACCCGCGTTGTATCCGAAGTAGTTGCGTGCTGGCTTCGATTTGT
TTCCACATATCCTCCTGCCGAGGTACTTCAGGCTGAGTTGTGATGCCGTC
GAGATCATGATTGACCAAATTTTCTCGCATGATGATTCATCTCTACTCAG
CTCAACAGCTACAAATATCTTGTCTGTCTAATCGTGCTCTATCTGCTCCC
ATGTAGATGCCCACCTTCCAACTTCATGTGATCGTGGGAATACGTCGAAT
ATATTCAAAATTGCACCGGTTGCAACTCACCCCGATACTAATCAAACACC
TGTCGTCAAACACACTCTCTTGTCGGACCCCTCCGACACCCACGAATCGT
GTACGGCCCGGTCTCTTCTGTGCAGCGGGGACGGACCCCACGCCAGAACC
GACACCTGAGCCGACTCCCAATACAGACAATGAGACCTGCGATATCTACA
CCGACATCCAGGGGCTCGTCGGGACCAATGACAATGGCACCGTCTGCTGT
CCGGTGAGCGTCCTTATCAAACAAACTGTCAACTGCCATGTACCGTTTGC
TACCAGACAAGCGCCAAAGCTCGTGTACGTCGCCGTGTCAAATTGGTGAT
GGTAGCTAATCGAGTGTGCCTTTCGCGCTGCTGAACATATCGAGACCAAC
CGACATCCCCTTCGACATTCCCCGTTCCCAACAACAGCTCGAATGCGGCA
CGTGTGGTGGTGGCCCAGAATGTGCCTCGAACCAGCGTCGCGGACGCATC
GGGCGTCGCAGACGCAACTGTTGCATCGATGACATCATCCGAACGTGTGA
TCCGTGCTCCAGACCTGGCGCCCAGGCCCCGTGCATCATCGTTGGTGAGT
GCTCCCACCGAGAGCAAGCACCACCGAGCAATGAGTGAAGAGTGTCATGC
CGGCTGCCTTAGACAGGCTGCCTTAAAAACGCTTTGCATCTCAAGGGTGT
GATTGCTGGCTTGGAAAGAAATTCCACCGCTGGCGAGTCTCGTATCTATG
GTTGTAAATGTTTGTGCAGTTTATGACCTGCTGCTCGTGCAAAACTTTCG
ACGTTGCTCGCTGCCGTCCTACCTCGTGCCGGTATGGTTAGCTAGGTACA
ACAGTCTCCTACAAGGTTAAAGCCATGTGTCCTCTTCCCGAGGTACCTCC
GGCTTGGCTGTGATGCATGCGAGGGAACGCCGTCGGGTTTGCGGTAGAAT
CAATGCAAACCAGACGCCCCAATAGACCACCCCCACTGCTTTGGCTGTGC
CTTAGCTCGCCCTTCTGATGATTGATTTCCATGTTTTGTCTCCGCACTCG
TTCAACATATATCTGTTGTTCCCATGGAGGTCCACATCTTCCACCGTCAT
GATATCTTGCTCGTGCATAATAATGTGCACCGATTTTGCCCCGATACTGA
TCAAACGCCGCCTGTCACATGCTTGACGCAACCATTCCCCTTGTGGGACC
CTTCCGACAACGACTCATTCGTACGGCCCTGTCTGCTCACGCAGCGGAGA
CGGGGCCGACTCCCGCACCGACTACAGCGCCGACTACTGCC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13359:1630..3670+

>mRNA_E-fasciculatus_F_contig13359.2519.1 ID=mRNA_E-fasciculatus_F_contig13359.2519.1|Name=mRNA_E-fasciculatus_F_contig13359.2519.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=540bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13359:1630..3670+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACACCGGCCCAACCGACGTGCGCCCCCTACCACCCGGGCATGCAAGGAAA
CGTCGGCCAGAACGGCAATGGCACAGTCTGCTGCCCGACACCGGCCCAAC
CGACGTGCGCCCCCTACCACCCGGGCATGCAAGGAAACGTCGGCCAGAAC
GGCAATGGCACAGTCTGCTGCCCGCTCGCGTGCGGCACGTGCGGTGGCCC
ACAATGTGCCTCGAAGAAGCGCCGCGGACTCCACTGTTGCATCGATGACA
TAATCCAAACGTGCGACCCGTGCTCTAGACCAGGCGCCCAGGCCCCGTGC
ATCATCGACGCTCGCGTGCGGCACGTGCGGTGGCCCACAATGTGCCTCGA
AGAAGCGCCGCGGACTCCACTGTTGCATCGATGACATAATCCAAACGTGC
GACCCGTGCTCTAGACCAGGCGCCCAGGCCCCGTGCATCATCGACGCGGA
GACGGGGCCGACTCCCGCACCGACTACAGCGCCGACTACTGCCCGGAGAC
GGGGCCGACTCCCGCACCGACTACAGCGCCGACTACTGCC
back to top