mRNA_E-fasciculatus_F_contig13351.2515.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13351.2515.1
Unique NamemRNA_E-fasciculatus_F_contig13351.2515.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13351.2515.1 vs. uniprot
Match: A0A6H5L179_9PHAE (Aurora kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L179_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 6.310e-70
Identity = 162/234 (69.23%), Postives = 170/234 (72.65%), Query Frame = 1 
Query:   19 GGSCIDTNSSTCSSFFSEGYLAQAVGVGPAEPT-AGADPAWRGRGGAATAVDPPRGENRTPLPDRGRRAGASIPGLGEAFRNGDGDLEVRFCDGVMVVVDAKAKWMRVERHRQXXXXXXXXXXXXXXXLLCSGPPYPVEPTTTRSVTYDLGKHAAGRRKETRXXXXXXXXXXSRESGERMPRDVKDRMKVLPRFIAILKDAPTPARARGGRPKDVASAERSGEAGRRHSRHSRR 717
            GG C+D N STCS  FSEG LAQAVGV PAE T A A  A RGRGG A A  PPR E+R PLPDRGRR GASIPG+GEAFRNGDGDLEV FCDGVMVVVDAKAKWMRVER + XXXXXXXXXXXX      +G   P   TTTRSVTYDLGKHAAGRR E R          SRE GER+PRDVK+RMK LPRFIAILKD   P  AR GR KD ASAER+GE  RR  R   R
Sbjct: 1460 GGPCLDPNPSTCS-LFSEGNLAQAVGVRPAETTVAPAGAARRGRGGKAAAATPPRDEDRRPLPDRGRRGGASIPGVGEAFRNGDGDLEVLFCDGVMVVVDAKAKWMRVERRQXXXXXXXXXXXXX------TGSGRPTPSTTTRSVTYDLGKHAAGRRTEARGIGG------SRELGERLPRDVKNRMKALPRFIAILKDDGPPP-ARDGRQKDGASAERTGEVSRRRPRRGAR 1679
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BLAST of mRNA_E-fasciculatus_F_contig13351.2515.1 vs. uniprot
Match: D7FZ88_ECTSI (Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ88_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 3.340e-59
Identity = 146/223 (65.47%), Postives = 154/223 (69.06%), Query Frame = 1 
Query:   19 GGSCIDTNSSTCSSFFSEGYLAQAVGVGPAEPTAGADPAWRGRGGAATAVDP-PRGENRTPLPDRGRRAGASIPGLGEAFRNGDGDLEVRFCDGVMVVVDAKAKWMRVERHRQXXXXXXXXXXXXXXXLLCSGPPYPVEPTTTRSVTYDLGKHAAGRRKETRXXXXXXXXXXSRESGERMPRDVKDRMKVLPRFIAILKDAPTPARARGGRPKDVASAERSGE 684
            GG  +D N STCSSF SEG LAQAVGV PAEPT   +                PR E+  PLPDRGRR GASIPG+GEA RNGDGDLEVRFCDGVMVVVDAKAKWMRVER   XXXXXXXXX         SG P P +  TTRSVTYDLGKHAAGRRKE R          SRE GERMPRDVKDRMK LPRFIA+LKD   P  AR GRPKD ASA+ +GE
Sbjct: 1163 GGPRLDPNPSTCSSF-SEGNLAQAVGVLPAEPTTPPNXXXXXXXXXXXXXXXXPRDEDLRPLPDRGRRGGASIPGVGEACRNGDGDLEVRFCDGVMVVVDAKAKWMRVERRXXXXXXXXXXXPPHPG----SGAPIPSK--TTRSVTYDLGKHAAGRRKEARGVGG------SRELGERMPRDVKDRMKALPRFIAMLKDDGPPP-ARDGRPKDAASAQGTGE 1371
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13351.2515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L179_9PHAE6.310e-7069.23Aurora kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FZ88_ECTSI3.340e-5965.47Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13351contigE-fasciculatus_F_contig13351:2424..3626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue8.1e-25
Seed eggNOG ortholog2880.D7FZ88
KEGG koko:K06660,ko:K08863
KEGG Pathwayko04068,ko04111,ko04113,map04068,map04111,map04113
EggNOG free text desc.regulation of centriole replication
EggNOG OGsKOG0575@1,KOG0575@2759
EC2.7.11.21
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size739
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13351.2515.1prot_E-fasciculatus_F_contig13351.2515.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13351 2431..2862 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927836.5756807-UTR-E-fasciculatus_F_contig13351:2423..24301622927836.5756807-UTR-E-fasciculatus_F_contig13351:2423..2430Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13351 2424..2430 -
1695995716.238785-UTR-E-fasciculatus_F_contig13351:2423..24301695995716.238785-UTR-E-fasciculatus_F_contig13351:2423..2430Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13351 2424..2430 -
1622927836.634466-UTR-E-fasciculatus_F_contig13351:2862..28831622927836.634466-UTR-E-fasciculatus_F_contig13351:2862..2883Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13351 2863..2883 -
1695995716.256876-UTR-E-fasciculatus_F_contig13351:2862..28831695995716.256876-UTR-E-fasciculatus_F_contig13351:2862..2883Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13351 2863..2883 -
1622927836.646674-UTR-E-fasciculatus_F_contig13351:3347..36261622927836.646674-UTR-E-fasciculatus_F_contig13351:3347..3626Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13351 3348..3626 -
1695995716.264819-UTR-E-fasciculatus_F_contig13351:3347..36261695995716.264819-UTR-E-fasciculatus_F_contig13351:3347..3626Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13351 3348..3626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927836.608255-CDS-E-fasciculatus_F_contig13351:2430..28621622927836.608255-CDS-E-fasciculatus_F_contig13351:2430..2862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13351 2431..2862 -
1695995716.2488427-CDS-E-fasciculatus_F_contig13351:2430..28621695995716.2488427-CDS-E-fasciculatus_F_contig13351:2430..2862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13351 2431..2862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13351.2515.1

>prot_E-fasciculatus_F_contig13351.2515.1 ID=prot_E-fasciculatus_F_contig13351.2515.1|Name=mRNA_E-fasciculatus_F_contig13351.2515.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=144bp
MVVVDAKAKWMRVERHRQQQQQQKDQRGSHHHSLLCSGPPYPVEPTTTRS
VTYDLGKHAAGRRKETRSGGGGGGGGGSRESGERMPRDVKDRMKVLPRFI
AILKDAPTPARARGGRPKDVASAERSGEAGRRHSRHSRREAGP*
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mRNA from alignment at E-fasciculatus_F_contig13351:2424..3626-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13351.2515.1 ID=mRNA_E-fasciculatus_F_contig13351.2515.1|Name=mRNA_E-fasciculatus_F_contig13351.2515.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1203bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13351:2424..3626- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGGAGCAAGAAGAGGAGGGGGGTCGTGTATCGATACGAACTCGTCAAC
TTGTTCCTCGTTCTTCTCCGAGGGCTACCTAGCCCAAGCAGTCGGGGTGG
GGCCAGCAGAACCAACCGCCGGCGCCGACCCGGCGTGGCGGGGCCGCGGG
GGCGCGGCCACTGCGGTTGACCCACCCCGTGGCGAGAATCGCACACCGCT
ACCCGACCGGGGGCGACGTGCGGGCGCCAGCATTCCCGGGCTGGGAGAGG
CGTTCAGGAACGGAGACGGCGACCTTGAGGTAAGGCGTTGGGGGGCATGT
ATGCGTGAATACCTTCAACCTATTTATTTTGTTTTGGCACGTCCTGCAGT
CCTTGTAAACTGGTCGGGGTATTGTTGCGTTGTTGCGAACGGGCGGGTAG
TCTTTCCGCGACTGTATATGTTGTGAAGTTGCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTGTTGCTGCTCATGTGGGCTTGTACGTTGTTGAC
GCTGGTTGATCACGCGATAGTTTTGCTTGTCGGGGCTTTGAGTCGCGAAG
GTGGGGCGGGCGCAGCGGCGCCTTTGTACCGCTGCAAGGATGTCGCCCTG
CCTTTCGTGTCACACTGATGGCGATGCAGAACCTGTGATGCCAGCCAGCA
CAACAAAAAGCACCACCTCAACGTATCCCCAACCCTTCCACGATAGACCG
ACCACTTGTAAAACTATCCTCTCACGGAACAACGGCGCGGCAGGTGCGGT
TCTGTGACGGCGTGATGGTCGTTGTGGACGCTAAGGCCAAGTGGATGCGG
GTAGAACGACACCGGCAGCAGCAGCAGCAGCAGAAGGATCAGCGTGGGAG
CCACCACCACTCCTTGCTGTGCAGCGGTCCCCCCTACCCCGTCGAGCCTA
CGACGACCCGAAGCGTAACGTACGATCTCGGGAAACACGCCGCTGGGCGG
AGAAAAGAAACCCGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCCG
GGAGTCGGGTGAGCGCATGCCCCGGGACGTGAAGGACAGGATGAAAGTGC
TGCCGCGCTTCATTGCTATCCTTAAGGATGCTCCCACGCCGGCAAGAGCA
AGAGGCGGGCGGCCGAAAGACGTGGCTTCTGCTGAGCGGAGTGGGGAGGC
TGGCAGACGGCATTCTCGGCATTCTCGGCGTGAGGCGGGGCCGTGATGTA
GAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13351:2424..3626-

>mRNA_E-fasciculatus_F_contig13351.2515.1 ID=mRNA_E-fasciculatus_F_contig13351.2515.1|Name=mRNA_E-fasciculatus_F_contig13351.2515.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=864bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13351:2424..3626- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTCGTTGTGGACGCTAAGGCCAAGTGGATGCGGGTAGAACGACACCG
GCAGCAGCAGCAGCAGCAGAAGGATCAGCGTGGGAGCCACCACCACTCCT
TGCTGTGCAGCGGTCCCCCCTACCCCGTCGAGCCTACGACGACCCGAAGC
GTAACGTACGATCTCGGGAAACACGCCGCTGGGCGGAGAAAAGAAACCCG
CAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCCGGGAGTCGGGTGAGC
GCATGCCCCGGGACGTGAAGGACAGGATGAAAGTGCTGCCGCGCTTCATT
GCTATCCTTAAGGATGCTCCCACGCCGGCAAGAGCAAGAGGCGGGCGGCC
GAAAGACGTGGCTTCTGCTGAGCGGAGTGGGGAGGCTGGCAGACGGCATT
CTCGGCATTCTCGGCGTGAGGCGGGGCCGTGAATGGTCGTTGTGGACGCT
AAGGCCAAGTGGATGCGGGTAGAACGACACCGGCAGCAGCAGCAGCAGCA
GAAGGATCAGCGTGGGAGCCACCACCACTCCTTGCTGTGCAGCGGTCCCC
CCTACCCCGTCGAGCCTACGACGACCCGAAGCGTAACGTACGATCTCGGG
AAACACGCCGCTGGGCGGAGAAAAGAAACCCGCAGCGGCGGCGGCGGCGG
CGGCGGCGGCGGCAGCCGGGAGTCGGGTGAGCGCATGCCCCGGGACGTGA
AGGACAGGATGAAAGTGCTGCCGCGCTTCATTGCTATCCTTAAGGATGCT
CCCACGCCGGCAAGAGCAAGAGGCGGGCGGCCGAAAGACGTGGCTTCTGC
TGAGCGGAGTGGGGAGGCTGGCAGACGGCATTCTCGGCATTCTCGGCGTG
AGGCGGGGCCGTGA
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