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Homology
BLAST of mRNA_E-fasciculatus_F_contig1335.2514.1 vs. uniprot
Match: D7G7F7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7F7_ECTSI) HSP 1 Score: 525 bits (1352), Expect = 1.200e-181 Identity = 254/273 (93.04%), Postives = 262/273 (95.97%), Query Frame = 1
Query: 574 MSESKARSRRRRSKLKPGMCVKAFRLECERDARGTVNVEAHEVHTVIGEDDSFSESFINPDDGFFLRRDPLSYERRRIYERSSFNIQPPRQRLKAVETETDAQIIHVSDEPLEPKRFPPMKSTPGEGFRETNATEVIFGVDPSHGCPRPWVTPVAFRLIKEVWEQVTNAGGVFTADYDLSKSGWAMFHTIYICPAPGTAMYVQAFRVEPKAGQCCSSGWDHVDKPLFRSGGRLFKADFSPINVDVLDPVVFKPIRRLLNHPPTLTNVADAAWV 1392
MSESKA RRRRSKLKPGMC+KAFRLECERDARGTVNVEAHEVHTVIGEDD FSES+INPDDGFF RRDPLSYERRRIYERSSFNIQPPRQRLKA+ETETDAQIIHVSDEPLEPKRFPP++ TPGEGFRETNATEVIFGVDPSHGCPRPWVTPVAFRLIKEVWEQVTNAGGVFTADYDLSKSGWAMFHTIYICPAPGTAMYVQAFRVEPK QCCSSGW+HVD+PLFRSGGRLF ADFSPINVDVLDPVVFKPIRRLLN+PP LT ADAAWV
Sbjct: 1 MSESKAPLRRRRSKLKPGMCLKAFRLECERDARGTVNVEAHEVHTVIGEDDKFSESYINPDDGFF-RRDPLSYERRRIYERSSFNIQPPRQRLKALETETDAQIIHVSDEPLEPKRFPPLRKTPGEGFRETNATEVIFGVDPSHGCPRPWVTPVAFRLIKEVWEQVTNAGGVFTADYDLSKSGWAMFHTIYICPAPGTAMYVQAFRVEPKTVQCCSSGWNHVDRPLFRSGGRLFNADFSPINVDVLDPVVFKPIRRLLNNPPALTANADAAWV 272
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-02_000090.1 |
| Exons | 3 |
| Model size | 2020 |
| Cds size | 822 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1335.2514.1 >prot_E-fasciculatus_F_contig1335.2514.1 ID=prot_E-fasciculatus_F_contig1335.2514.1|Name=mRNA_E-fasciculatus_F_contig1335.2514.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=274bp
MSESKARSRRRRSKLKPGMCVKAFRLECERDARGTVNVEAHEVHTVIGED DSFSESFINPDDGFFLRRDPLSYERRRIYERSSFNIQPPRQRLKAVETET DAQIIHVSDEPLEPKRFPPMKSTPGEGFRETNATEVIFGVDPSHGCPRPW VTPVAFRLIKEVWEQVTNAGGVFTADYDLSKSGWAMFHTIYICPAPGTAM YVQAFRVEPKAGQCCSSGWDHVDKPLFRSGGRLFKADFSPINVDVLDPVV FKPIRRLLNHPPTLTNVADAAWV* back to topmRNA from alignment at E-fasciculatus_F_contig1335:9070..16007+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1335.2514.1 ID=mRNA_E-fasciculatus_F_contig1335.2514.1|Name=mRNA_E-fasciculatus_F_contig1335.2514.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6938bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1335:9070..16007+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GCCTCGGGTTATTTGCCACAGAGACCAATCGGTGTGTTGCAGCACAGCAG
CAGTGTCAACCCGGACCACACCGAATGTCGTTACAGCAGTTTCAGATGCG
GACCGGTGGTCTCCCAAGCAAACTACTCTGTGCCTGTGTCGTCATTCCAA
GCCCGCCCGCGCGACTGCTGCTGTTCCGTCTGCTGTGTTTGTGCTGCTGT
GCTGTACTGCGGTCGTTACGCGACCAAGCATCACACACGGAGACAGACGT
GGAAGGAAGCAGGGTTGACATTCCACGCAGCTCGCAGATCAGACGATCGA
TCGGGATTCAACTTTTTGGGGCGCGTGAACATTTTTTGGCTGCGCCGCCC
TGTGCGCGGTGTCGGTCTGGAAGGGAGCCGTCTGTTTCAGTCCCACAGCA
GCAGCAGCAGCAGCGGTTTCACACGACACAACAACAATAGGCAAAGCGAC
GGCAGCCAAGAGGGAGCTGAGGGATGAGAAAGAAGCGTGTCGGTGAAGGG
TGCTGCATAGAGGTGAAGGCGCACAGCTACGGTGGAGTAGCCGTCTGGTC
CGCGGTGAGTGATGCTAGCCTGGTGCCAAGTGTTAGATCGATCGAGCCGG
ACACTCATCATGCAAACTGAAGGGAGATCACACATACATGTGTGTAAACA
TACATGTGTGTAATAACCTGTAACCTGTTGGATGGAGACGGGGAACAATT
TGAAGTTTCGGCGCATGAGGGATCCACGGATGGTGGTTGGTACCCGCAGT
TGAACTTTGCCCTTCATGGAGATTTGGACTGCGCTACCACCTTGGCCGGG
CGGGTTGGTTAGCGACACACGCAGACTCCTGCAGGTTGACCAAAGCTGCA
GTGGCTCTATGTTGCCTGATTTCTCATTTTCCCATTTTTCTGCTGCTGCA
AACAACATCAGAGCAACCTTCGGGGACCGATAGATTGTGCGGTTGCGCAC
GATATGCATACGCTCAATAGGCAGGAGGAGTTTGACCCTCATGAGTTCGC
CTCTGCATCTCGTTACATGGGCACTGTTGTTAAGAGTGCCGAGAGCTTCC
CACGCCAGTCAGACAACACAGCACAAGTATTTGCACGTGGACAAACAAAT
CTAGCTTCGCCCCAAAAGACCATGATGATGACGCCATGACGATACTTTCG
GGGGGATTCGGAAGGCAAAGGTGAAAAGAGAAACAGAGAAGGCTCCCTGC
ATGAGGGGACGGCATGCAGTCGCAGGTAGAGGACCGTAGAAGCTACAACA
GAGCGCGACGCCAATACCGTTTTCGGCACCTGTGCGTCGGAGCTGAGACA
GCGAGAACGCGAGACCCTACCGGGTGGAACGCGTGCAGAAAAATTAATTT
TGTGGTTCAGATGATACCCCGAAACGGTATCAGTGCCGCCGCATCTTGCC
TTTTATCGCATGATGCATGATGCATGATGCACGGATGCACGCAAGCAGCT
TATTGCCGGGGAGGAGAGTGGAGGCAAGCGAGGAAACAGCAGTAGTAGAT
CCGTTGCTGTTTTTTCTCTGCCATTCTCCTGCTCATTTTTGTTTCTCCCC
GTGTTGACGTGTTGTCCATCGTTGTCGTCCAACCTGGAGGGGGACAGATG
ACGTACCGTATGTGACACAAGATACCACACCCCTTGAAGCTGTTTTCAAA
GCTCGATTCCTCCACAGAATAGAATGACTGGCAGCGCCGAAAACGGTGGT
GTTGAAGCGGTCTTGAAGAGCTGTCGATGACGTTTCTTTTCAGTTCTTCA
TCTTCTTCGTCGTGGAGTAATCGATATACTGTAGTCTAGCTTTGAAAATC
GGGGGAGTGGTACAAGTACAATGCCTTGTGTCACGTCGTCGGTGGCTGTA
TGTAGTCTAAATGCTGTATTGCGGCGGCGGCGTCCCTTTCTTTCCCCCCT
TTTTTTAATTAAAGAGGGCCTTTCCGAACTGGTACTGGCTACAATATGTA
GATTATTTTGTTCCTTGCTTCAAAAAATCTTTTGAATCCCAGGTGGAGAC
TGGATCGATCGGGGGCACGACCTTGTCCCTTCCCATCAAGCAAGAATATT
GACAGTTGACTCTTGCCGCACGACCGACCCAGCAATCACACACGTGACAC
GTAAGACCAGTCGGGGAAGTGTTGCGCAACTCACAATCCGTGAATTGTTA
AGCAAAACAGTCGTTGAGGGGCTTGTCTCCAACATCATATCACGTACAAT
AGTCTACCTTCTCCCCAGCCAAGCAAAAATAAACTCAGACAAAACGAGAG
TCAGACTTTTTTAATACAACGCCGAAAACGGTTTTACTTGTCAGAGACTG
CCCCACCTTCCACCCACGGCTCAGACAAACACCCCTCGCAGCCCTTAACT
TTGCCTGAGGCGTGGGTTCCTCTCCAGCTGCCGCAGACTTTTAGCGGAAA
CAGAGTAGGAGAACCACAAAGATGGTATCGCAGGGTACAGACTCGTCCGA
TGCTCATGCCACCACCACTAGACAGACCTGCTCCTCCGATGCGGGTGGTG
TGTGTCTACATGTATGTTCATGTGGTGATAGGACAGCGCTCGCTGTGGAA
CCGACAAGGACCGGGTGAAATCAGACAAGGAAATTGAACAACTCTTCTGC
CTACAACCAATCCAGGAGAACACACAGATGACGAGCTCACACAGATGATG
AGCTGGAGGTAACTCAAAAGGCTGGGAGGTGGTCCAAAAGTTGTCTTGCG
TTACTTACTCTCTATGGGCGCCACTCCTCTAGACAGCTATTGTGATTTGG
AATGCTGCTCAAAATTTCGCTGTGTGAGGGTGATTTTGCTAGGTTGAAGC
TGCTGCTGCTAGCTGCTACAAAGCTGCTAGCTGCTAGCTGCTGCTGAAGC
GCCATCTCTCTCTCTCTCTCTCTCTGGCTTGATCGAAACAAGATGCCACC
TGATGAGCGGCTGAGAGTTTGCTTGCAAAAAGACTTCAGCGTGTTTCTCT
CTGGTGACAACACAGCCACCAGATGCTCCTGGCACCTTGGATGATAGATA
GCAGCAGCAGCCAACCAAGCAACAAGAAAGGCAAGCGACGCGGGAACGGC
GCGCGCGAGTCTCTCAACCAATCAGCGGGGGGCAGTTGCCACTTCATGCC
GAAAAGTCTGAGCCTCCTCTTCGTTATTTTTTAAGACAATTTTGCCTGGA
GCAATTTTGTCTGAGAAAAACGAAATGTTTTCCCGAACCTCCCCAATATC
CCACCAGTATAACAAGACAATGCAGCCTACAACAGCGGGAGCTCAACAAA
GAAATAGACGTTGCGTTGCGGAGTCCCGACCTGGGCATGAATATATATTC
CAGTTGAAGACATGACGGGAATGCGTGAGTGTTGGTACGCCCAGATTTGT
TGCTGGGACCGTGGTGTCGAAGGCTGCAGCTGTAGTTGCGGTCCGAACAG
CCCGCTAGAAATATCTGGGTCCATACCATTTTCGATCCATTCCTGCACGC
GCTGTCACAGATCCGCTCCCCCAATTTTTTAGTGTGAGCCATGTATCTAG
TATTTTTAATTTGGGGGATTTGAGTCTATGACGGTGCGTGGAAGAAGTTG
ACGGTGAATGGTATGGTGCAGATTTGCCGATTATTCGGACCGCAGCTCGC
TGAAGCCTTCGACGGCACGCCCCCAGCAACAGATTTTTGCGTATCGACGC
GCATGCCGCTCTTCCATAACGTCCTCTGGAATACATGGCCATGTCGGGGC
TCTGCTAGCCGGAAGGTCGTTTTTGGAGGGCATCTTGGCTAAGACCAGAG
CAAAGACCAGGTGGGCAAGACCCCCAATAATTTGGCCTTGCTGTGCTGAC
AGCAACGAGCAACAAACCATATGTTGTCGTGCGAGATCCTAATGGCTGCC
ATTGCCCTATCCTAGCGTCGACGAAGAAACAGCCACATACGTAGGTCACA
CTGTGCGAGTTTGCGTGTCGCGCTGAAGCACCGATGGTTGTAGGTAAGGG
AAGAGATCCCATTTGGTGTTCCACAGTAAGGCCGTAGAAAATCGGCTTCA
AGGGATATGGAAAGCGCAGCGCGTCCCAGGCTGTACCTGCACGTGAACAA
GTTGTGTACCCACACGACGTCTAGTTTAGAGCGTGATACGCCTGAGTCGG
CTGGGGTATGTGCTGTGGGTGACAGTGAGCGTCCCAATCCGACGACGAAA
GGACGAAAAAATAAGTGGACAACTCGAACGGAGAAACCAAAATATTTGAC
GATGCCATGGTCGAAGCAAACCTTTTTGACATTCTTCTCTCCCTTCAACA
TGCGTAAACTCTGCGTGCATGCTAAATTGCTTCCTCACTATCAGGGAAAA
CGTCGGGTTGCTACTGATGGGTACGCACGGACAAGAAACAATAGTTTTGA
GTACTGGCCCCTGGTGGTATGGAAACGAGAATGTTCTCTGTGGGCAAAAA
GTATAGATCCCTTGTTGGCGGAGGGATACGCCATATCGACGGCAGAAAAA
TCACGGGGCTATTGTTTCGATAATGGCCACGGTCACCATTTTTTGCGCGT
TCGAGTGGCCCGCGGGCTTTTCCGTCCTTGTTCTACCCTTTGGCCTTTGT
GCAGGGTCTTGCGCTCACTGTCACCCACAGCTTGCGCCCAGCCCAAACCA
GGTGCACAACAGATCAGCGTAGTAATCCGCTTGTTGCACTAGGTGCAAAG
ACGGCAAACGTCCAACATATTGCAAAGTCTTTCGCTGCACGGTGCAGCCT
GAGGCACATGCACCAAACACCGAAAGACTCAACCTTGCACCAAAAACCGA
AACTGGAATATTCTGAGCGAGTTCTTAAGCTCAAGCTCACCCTGGCCAAG
ATGTCTGTTGGCTGAATCGAGACGTGGCGAGGATGCAGAACGGCCCAGCT
GCTGTTGCATTAGGAGTGTACATGATAAACACTCCCACAAGATATTTGAT
AGATAGCAGCATAGTCTATGGGCAACGAGCAACGACGAAAAACACTCATA
TCCTCAACCTACAAATAGCTCGCCAGGACGAGCTATTCTATCAGTCTCAG
CAGTTTCTTCATCGTGATGAAAATGAACAGGTTTCAGGCTACACCACACA
TGTCGGAGTCCAAGGCACGGTCGCGAAGGCGGCGATCGAAGTTGAAACCA
GGGATGTGTGTCAAGGCTTTCCGGCTGGAGTGTGAACGGGACGCAAGGGG
GACCGTGAACGTCGAGGCGCACGAAGTCCACACAGTGATCGGAGAAGACG
ACAGTTTTTCGGAGTCGTTCATCAACCCGGACGACGGCTTCTTTCTTCGC
CGAGATCCGCTGTCGTACGAGAGGAGGAGGATATACGAGCGGTCGTCGTT
CAATATACAACCTCCACGTCAGCGCTTGAAGGCTGTCGAGACGGAAACTG
ACGCGCAAATCATCCACGTCAGCGACGAGCCACTCGAACCGAAGAGGTTT
CCCCCAATGAAATCAACTCCGGGGGAGGGGTTTCGCGAAACAAACGCCAC
CGAGGTGATATTCGGGGTTGATCCAAGCCACGGATGCCCTCGCCCATGGG
TGACTCCGGTGGCCTTCCGGCTGATCAAGGTGGGTGTAGTGCATGGAGGA
AGGTGTGCCGGGGTATGCATGCACATCCGACCTGTCCCCCGGCTGCTTCG
CTACTTTAATCCATCTTGGGAATGAAAGTGTACCACAGAATGCCGTAATC
AAAGTCGACGGGGTCGGGTGTCGTCGTTACCGTGTGTGTGCTGTGTGCAA
CCCGTACAAGCGAGTTCAGCATTAATGCTGCGAGGGGCTTCCTGCGTCCC
TCTCATGTTCTGTCTTGAATCCGTCTTCCTGGTTGACGGTTGGACCACAC
AAATACCTGCAGAACTGATTCAAGACAGAACATGAGAGGGACGCAGGAAG
CCCCTCGTACTGTAGTGCAGCGGTGACCTAGTCTACATCAGTACCCCAGC
ACACGAGATACATCTGGTTGCCGCTGACTCTCCCCGCCAATCTCCCCTCT
GACGTCGATATCTCCTCGCAGGAAGTGTGGGAGCAGGTGACCAATGCCGG
GGGCGTGTTCACAGCGGACTACGACTTGAGCAAGTCAGGCTGGGCGATGT
TCCACACAATTTACATCTGTCCGGCGCCCGGCACGGCGATGTACGTGCAG
GCATTCAGAGTTGAGCCGAAGGCGGGCCAGTGTTGCAGTTCGGGGTGGGA
CCACGTGGACAAGCCGTTGTTTCGCTCTGGGGGGAGGTTGTTCAAAGCGG
ACTTTTCTCCCATCAACGTGGACGTTCTAGACCCGGTGGTATTCAAACCC
ATCCGGCGACTTCTTAACCATCCGCCGACTCTGACCAACGTTGCGGACGC
AGCGTGGGTGTAGTGTTGTGGGTGGCGCTAGGAATAAGGTGTCTATAGGA
GACTTCCCATCATCTCGTGTTTTGACCGATTGTTGGGCAGGTTAACGTAT
CCCGAGGGCTGAAGATTGCTAACAATGTCGTCCGTCGAGAATTGTAGTGG
TATGTTGTGCATTGCCGAGTTTTTCAGTAGTCTTCACACGTCCTCTCGGC
CCCCAGCATGCCAAAAAACGACTATAACAATATTAATATTTTGCCATGTA
TTTTTCGTTCAGTTTGTTTTTCAACGTTGTCCAGAACGTGCGGGGAAGCC
GCGCGTGGATGTGTGGGGGTGGGTATGGGTTGGAGTTGGGTTGAGTTGGG
TTCGGTGGGGTTGGTTCAACCCCTAACCAACCCTCTGATGCTTTGTCGAA
CTTGCAGGTCAAGACAGGTCGTTAGGGTAGGGTTTTTTCGAGGGTTGAGG
CCGTACGGGTTTCGCACCCTGCCGACCGCTATGCATACAAGAGTTTGGGT
GTTACAAGGTCTTGGCTTGACGGTTTTTTAGCTCACGCCACAGAGATGTT
TACTGCGCGCAAGGGGCCTTAAAAGTCATTGCATTCCGCAGCTTGTACAA
GGGCACGGATAGTTTCATCATCTTCATGGGTTGACGGC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1335:9070..16007+ >mRNA_E-fasciculatus_F_contig1335.2514.1 ID=mRNA_E-fasciculatus_F_contig1335.2514.1|Name=mRNA_E-fasciculatus_F_contig1335.2514.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1644bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1335:9070..16007+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGTCGGAGTCCAAGGCACGGTCGCGAAGGCGGCGATCGAAGTTGAAACC AGGGATGTGTGTCAAGGCTTTCCGGCTGGAGTGTGAACGGGACGCAAGGG GGACCGTGAACGTCGAGGCGCACGAAGTCCACACAGTGATCGGAGAAGAC GACAGTTTTTCGGAGTCGTTCATCAACCCGGACGACGGCTTCTTTCTTCG CCGAGATCCGCTGTCGTACGAGAGGAGGAGGATATACGAGCGGTCGTCGT TCAATATACAACCTCCACGTCAGCGCTTGAAGGCTGTCGAGACGGAAACT GACGCGCAAATCATCCACGTCAGCGACGAGCCACTCGAACCGAAGAGGTT TCCCCCAATGAAATCAACTCCGGGGGAGGGGTTTCGCGAAACAAACGCCA CCGAGGTGATATTCGGGGTTGATCCAAGCCACGGATGCCCTCGCCCATGG GTGACTCCGGTGGCCTTCCGGCTGATCAAGATGTCGGAGTCCAAGGCACG GTCGCGAAGGCGGCGATCGAAGTTGAAACCAGGGATGTGTGTCAAGGCTT TCCGGCTGGAGTGTGAACGGGACGCAAGGGGGACCGTGAACGTCGAGGCG CACGAAGTCCACACAGTGATCGGAGAAGACGACAGTTTTTCGGAGTCGTT CATCAACCCGGACGACGGCTTCTTTCTTCGCCGAGATCCGCTGTCGTACG AGAGGAGGAGGATATACGAGCGGTCGTCGTTCAATATACAACCTCCACGT CAGCGCTTGAAGGCTGTCGAGACGGAAACTGACGCGCAAATCATCCACGT CAGCGACGAGCCACTCGAACCGAAGAGGTTTCCCCCAATGAAATCAACTC CGGGGGAGGGGTTTCGCGAAACAAACGCCACCGAGGTGATATTCGGGGTT GATCCAAGCCACGGATGCCCTCGCCCATGGGTGACTCCGGTGGCCTTCCG GCTGATCAAGGAAGTGTGGGAGCAGGTGACCAATGCCGGGGGCGTGTTCA CAGCGGACTACGACTTGAGCAAGTCAGGCTGGGCGATGTTCCACACAATT TACATCTGTCCGGCGCCCGGCACGGCGATGTACGTGCAGGCATTCAGAGT TGAGCCGAAGGCGGGCCAGTGTTGCAGTTCGGGGTGGGACCACGTGGACA AGCCGTTGTTTCGCTCTGGGGGGAGGTTGTTCAAAGCGGACTTTTCTCCC ATCAACGTGGACGTTCTAGACCCGGTGGTATTCAAACCCATCCGGCGACT TCTTAACCATCCGCCGACTCTGACCAACGTTGCGGACGCAGCGTGGGTGT AGGAAGTGTGGGAGCAGGTGACCAATGCCGGGGGCGTGTTCACAGCGGAC TACGACTTGAGCAAGTCAGGCTGGGCGATGTTCCACACAATTTACATCTG TCCGGCGCCCGGCACGGCGATGTACGTGCAGGCATTCAGAGTTGAGCCGA AGGCGGGCCAGTGTTGCAGTTCGGGGTGGGACCACGTGGACAAGCCGTTG TTTCGCTCTGGGGGGAGGTTGTTCAAAGCGGACTTTTCTCCCATCAACGT GGACGTTCTAGACCCGGTGGTATTCAAACCCATCCGGCGACTTCTTAACC ATCCGCCGACTCTGACCAACGTTGCGGACGCAGCGTGGGTGTAG back to top
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