mRNA_E-fasciculatus_F_contig13346.2511.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13346.2511.1
Unique NamemRNA_E-fasciculatus_F_contig13346.2511.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13346.2511.1 vs. uniprot
Match: A0A6H5KNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 9.780e-16
Identity = 95/107 (88.79%), Postives = 96/107 (89.72%), Query Frame = -2 
Query:    3 GAMFSHPGAYGAMMLPPEALKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHPLCSGEPDKIDGLLSEAREAKEAEDALRAEAAILRERKAVLDGD 323
            GAMFSHPGAYGAMMLP      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  HPLCSGEP KIDGL+SEAREAKEAE ALRAEAAILRERKAVLD D
Sbjct:   31 GAMFSHPGAYGAMMLP---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLCSGEPGKIDGLVSEAREAKEAEGALRAEAAILRERKAVLDAD 134
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13346.2511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNU8_9PHAE9.780e-1688.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13346contigE-fasciculatus_F_contig13346:2882..3568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size688
Cds size687
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927836.1140473-CDS-E-fasciculatus_F_contig13346:2881..35681622927836.1140473-CDS-E-fasciculatus_F_contig13346:2881..3568Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13346 2882..3568 +
1695995716.0383828-CDS-E-fasciculatus_F_contig13346:2881..35681695995716.0383828-CDS-E-fasciculatus_F_contig13346:2881..3568Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13346 2882..3568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13346.2511.1prot_E-fasciculatus_F_contig13346.2511.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13346 2882..3568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13346.2511.1

>prot_E-fasciculatus_F_contig13346.2511.1 ID=prot_E-fasciculatus_F_contig13346.2511.1|Name=mRNA_E-fasciculatus_F_contig13346.2511.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=229bp
MSPSSTAFLSRKIAASARRASSASFASRASDKRPSILSGSPEQRGCCCFC
WVLAVAASLLLLPPPLLMLLDLASSRRRRLLPAKNPDLSASGGSIMAPYA
PGWENMAPAFSAAAADAAAAEVAAAGAGSSFSSFFFLLRFHIMAEPTRAA
AAALVCLFSSWLTWIRALPSLHGECVCIMRPKVHKLLETAQRTRALGDQA
GKRVSASRDRLCAFVFAIRWAGSKLRSVR
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mRNA from alignment at E-fasciculatus_F_contig13346:2882..3568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13346.2511.1 ID=mRNA_E-fasciculatus_F_contig13346.2511.1|Name=mRNA_E-fasciculatus_F_contig13346.2511.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=687bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13346:2882..3568+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCCCGTCCAGCACGGCCTTCCTCTCGCGCAAAATCGCCGCTTCCGC
GCGGAGGGCGTCTTCCGCCTCTTTCGCCTCCCGCGCCTCCGACAAGAGGC
CGTCGATCTTGTCGGGTTCTCCCGAGCAGAGAGGGTGCTGCTGCTTCTGC
TGGGTGCTTGCGGTTGCGGCATCGCTGCTGCTGCTGCCGCCGCCGCTGCT
GATGCTGCTGGATTTGGCCTCCTCTCGCCGCCGCCGCCTCCTTCCCGCGA
AGAATCCGGACTTGAGCGCCTCCGGCGGGAGCATCATGGCGCCGTATGCC
CCCGGGTGGGAGAACATGGCGCCAGCATTCTCGGCTGCTGCTGCTGATGC
TGCTGCCGCCGAGGTGGCTGCGGCAGGAGCTGGGTCGAGCTTCTCCTCCT
TCTTCTTCTTGCTGCGCTTCCACATCATGGCCGAGCCGACGCGCGCTGCT
GCCGCAGCGCTCGTGTGTCTCTTTTCCTCCTGGTTGACTTGGATTCGTGC
GTTACCGTCTCTTCACGGCGAGTGTGTGTGTATCATGCGACCAAAGGTGC
ACAAGTTGCTTGAGACCGCACAGAGGACGAGGGCCCTCGGGGATCAGGCC
GGTAAGCGTGTTTCAGCCAGCCGCGATCGATTGTGCGCGTTCGTCTTTGC
AATCCGCTGGGCAGGCTCCAAGCTTCGGTCTGTCCGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13346:2882..3568+

>mRNA_E-fasciculatus_F_contig13346.2511.1 ID=mRNA_E-fasciculatus_F_contig13346.2511.1|Name=mRNA_E-fasciculatus_F_contig13346.2511.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1374bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13346:2882..3568+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCCCGTCCAGCACGGCCTTCCTCTCGCGCAAAATCGCCGCTTCCGC
GCGGAGGGCGTCTTCCGCCTCTTTCGCCTCCCGCGCCTCCGACAAGAGGC
CGTCGATCTTGTCGGGTTCTCCCGAGCAGAGAGGGTGCTGCTGCTTCTGC
TGGGTGCTTGCGGTTGCGGCATCGCTGCTGCTGCTGCCGCCGCCGCTGCT
GATGCTGCTGGATTTGGCCTCCTCTCGCCGCCGCCGCCTCCTTCCCGCGA
AGAATCCGGACTTGAGCGCCTCCGGCGGGAGCATCATGGCGCCGTATGCC
CCCGGGTGGGAGAACATGGCGCCAGCATTCTCGGCTGCTGCTGCTGATGC
TGCTGCCGCCGAGGTGGCTGCGGCAGGAGCTGGGTCGAGCTTCTCCTCCT
TCTTCTTCTTGCTGCGCTTCCACATCATGGCCGAGCCGACGCGCGCTGCT
GCCGCAGCGCTCGTGTGTCTCTTTTCCTCCTGGTTGACTTGGATTCGTGC
GTTACCGTCTCTTCACGGCGAGTGTGTGTGTATCATGCGACCAAAGGTGC
ACAAGTTGCTTGAGACCGCACAGAGGACGAGGGCCCTCGGGGATCAGGCC
GGTAAGCGTGTTTCAGCCAGCCGCGATCGATTGTGCGCGTTCGTCTTTGC
AATCCGCTGGGCAGGCTCCAAGCTTCGGTCTGTCCGCATGTCCCCGTCCA
GCACGGCCTTCCTCTCGCGCAAAATCGCCGCTTCCGCGCGGAGGGCGTCT
TCCGCCTCTTTCGCCTCCCGCGCCTCCGACAAGAGGCCGTCGATCTTGTC
GGGTTCTCCCGAGCAGAGAGGGTGCTGCTGCTTCTGCTGGGTGCTTGCGG
TTGCGGCATCGCTGCTGCTGCTGCCGCCGCCGCTGCTGATGCTGCTGGAT
TTGGCCTCCTCTCGCCGCCGCCGCCTCCTTCCCGCGAAGAATCCGGACTT
GAGCGCCTCCGGCGGGAGCATCATGGCGCCGTATGCCCCCGGGTGGGAGA
ACATGGCGCCAGCATTCTCGGCTGCTGCTGCTGATGCTGCTGCCGCCGAG
GTGGCTGCGGCAGGAGCTGGGTCGAGCTTCTCCTCCTTCTTCTTCTTGCT
GCGCTTCCACATCATGGCCGAGCCGACGCGCGCTGCTGCCGCAGCGCTCG
TGTGTCTCTTTTCCTCCTGGTTGACTTGGATTCGTGCGTTACCGTCTCTT
CACGGCGAGTGTGTGTGTATCATGCGACCAAAGGTGCACAAGTTGCTTGA
GACCGCACAGAGGACGAGGGCCCTCGGGGATCAGGCCGGTAAGCGTGTTT
CAGCCAGCCGCGATCGATTGTGCGCGTTCGTCTTTGCAATCCGCTGGGCA
GGCTCCAAGCTTCGGTCTGTCCGC
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