mRNA_E-fasciculatus_F_contig13346.2510.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13346.2510.1
Unique NamemRNA_E-fasciculatus_F_contig13346.2510.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13346.2510.1 vs. uniprot
Match: D7G1T9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T9_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.370e-19
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 GDGGGNAAVPPPALLVLAAVPLFCFLKRWRIQRLVADQEGTASISGSDDEAQS 159
            GDG GN AVPPPALLVLAAVPLFCFLKRWRIQRLVADQEGT SISGSDDE Q+
Sbjct:  127 GDG-GNGAVPPPALLVLAAVPLFCFLKRWRIQRLVADQEGT-SISGSDDEGQT 177
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BLAST of mRNA_E-fasciculatus_F_contig13346.2510.1 vs. uniprot
Match: A0A6H5KNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU8_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.580e-15
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 GDGGGNAAVPPPALLVLAAVPLFCFLKRWRIQRLVADQEGTASISGSDDEAQS 159
            GDG GN AVPPPALLVLAAVPLFCF+KR RIQRLVADQEGT SISGS+ E Q+
Sbjct:  280 GDG-GNGAVPPPALLVLAAVPLFCFIKRRRIQRLVADQEGT-SISGSNYEGQT 330
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13346.2510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1T9_ECTSI1.370e-1990.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNU8_9PHAE1.580e-1583.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13346contigE-fasciculatus_F_contig13346:1045..2439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927836.154481-CDS-E-fasciculatus_F_contig13346:1045..12231622927836.154481-CDS-E-fasciculatus_F_contig13346:1045..1223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13346 1046..1223 -
1695995716.0522473-CDS-E-fasciculatus_F_contig13346:1045..12231695995716.0522473-CDS-E-fasciculatus_F_contig13346:1045..1223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13346 1046..1223 -
1622927836.1749504-CDS-E-fasciculatus_F_contig13346:2341..24391622927836.1749504-CDS-E-fasciculatus_F_contig13346:2341..2439Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13346 2342..2439 -
1695995716.0620635-CDS-E-fasciculatus_F_contig13346:2341..24391695995716.0620635-CDS-E-fasciculatus_F_contig13346:2341..2439Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13346 2342..2439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13346.2510.1prot_E-fasciculatus_F_contig13346.2510.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13346 1046..2439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13346.2510.1

>prot_E-fasciculatus_F_contig13346.2510.1 ID=prot_E-fasciculatus_F_contig13346.2510.1|Name=mRNA_E-fasciculatus_F_contig13346.2510.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
GDGGGNAAVPPPALLVLAAVPLFCFLKRWRIQRLVADQEGTASISGSDDE
AQSDKEEEEVVEDAWWGKGAVDDEKKKTKMGDGVGDSNAEER
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mRNA from alignment at E-fasciculatus_F_contig13346:1045..2439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13346.2510.1 ID=mRNA_E-fasciculatus_F_contig13346.2510.1|Name=mRNA_E-fasciculatus_F_contig13346.2510.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1395bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13346:1045..2439- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGACGGCGGTGGCAACGCCGCCGTTCCGCCGCCCGCGCTGCTGGTGCT
GGCCGCGGTGCCGCTGTTCTGCTTCCTCAAGCGCTGGCGAATCCAGAGGT
GAGCCACAAGTCGCGGCCAACGCTTTGTTTTGCACTCGTATCTATACATA
GCAAGCGGAGTCCTCTGTCCTCTGTCTTGTGCATACAAAATTACTTTGAT
GAACGGTCGGTCCTCACCTGTCGCCAGGTCCGGCACTGCTGTGGACTAAA
ACGCGAACATTAAATACAACACGGCTATCTGTACAGCCGATGTTCGAAGG
GTCGTTCAACAACAGTCTCGATCATGTTTTTTCGCAGGATGTGGTGCTCA
TGATGGCAGGAGCACTTTTGGTGCCAGATGCTTTTTTTATACTCAGCTCG
TCCCCAAGAACAGGATATCCTTGCCAAAGTTGTCCCACCCATTTCGGGGA
GAGTATCCCAACCCCAACTCATGCCGCGTTGCATCCAGGCGACGTGACTT
GCCATGAGAAGCCTGTGCATATGACACGCAATTGCCGTAAGAGTACCGGT
CATCGCACACGCCCCTACACAGACCTACAACGCTCGATTGCTCCCAAGCA
AAGAATAGGTTGTGACAACCGGCCGTAGGGCCACAAGGGAATTCTCTGCG
AGACACTGCCAAATCCACCTCTTTACCTTTTTAGGAGTATGAATATACGG
AAACCACTGGAAGACTGCCCGTTGGAGATATGACCACAGCCAATAGGGAT
GCGCTGAATTCGTCACCTTGTCGTAGTGGGTGCCCTGTTATTGTTTGTGG
AGTCATGTACATGAAATCGAGACAATGAGATTTTTGTCATGATTACGGGA
GTTGCGATAACCCGCAATACCACAGACGGCAGCAGCCAGAGAACTGACTG
GCCGTAAGCTTGACCGGCGCTTGTGCGACTCGTGTGTCTCCGAAATCGTA
GATGCGAGAACGGACGGTATATGCTCATGTACATAGCCGCACAGACAGCC
GCCGATGTGTCCCGCTCTCATATGCGTGATTGGTCGTGTTTGTCGAACCC
CCTCCGGGCGCATACTGAACGCTCCGAGTTCCACCTCTTTCAACGCCAAG
CGAGAGCCTCCCCCATTGTAAAGCTTCTATACTAGAGCGCCGTGTCCATC
TTCACTCGTCTGCGCTCCCCCTAAGTTAACCCTGTGCGGCAATTTCCCCC
GTCTCCTTGGGTGCAGGCTCGTGGCAGACCAAGAGGGCACCGCCAGCATC
AGCGGCAGCGATGACGAGGCCCAGTCGGACAAGGAAGAAGAGGAGGTCGT
TGAGGACGCCTGGTGGGGGAAAGGGGCGGTGGACGACGAGAAGAAGAAGA
CGAAGATGGGAGACGGTGTCGGGGACAGCAACGCCGAGGAGAGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13346:1045..2439-

>mRNA_E-fasciculatus_F_contig13346.2510.1 ID=mRNA_E-fasciculatus_F_contig13346.2510.1|Name=mRNA_E-fasciculatus_F_contig13346.2510.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13346:1045..2439- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGACGGCGGTGGCAACGCCGCCGTTCCGCCGCCCGCGCTGCTGGTGCT
GGCCGCGGTGCCGCTGTTCTGCTTCCTCAAGCGCTGGCGAATCCAGAGGG
AGACGGCGGTGGCAACGCCGCCGTTCCGCCGCCCGCGCTGCTGGTGCTGG
CCGCGGTGCCGCTGTTCTGCTTCCTCAAGCGCTGGCGAATCCAGAGGCTC
GTGGCAGACCAAGAGGGCACCGCCAGCATCAGCGGCAGCGATGACGAGGC
CCAGTCGGACAAGGAAGAAGAGGAGGTCGTTGAGGACGCCTGGTGGGGGA
AAGGGGCGGTGGACGACGAGAAGAAGAAGACGAAGATGGGAGACGGTGTC
GGGGACAGCAACGCCGAGGAGAGGGCTCGTGGCAGACCAAGAGGGCACCG
CCAGCATCAGCGGCAGCGATGACGAGGCCCAGTCGGACAAGGAAGAAGAG
GAGGTCGTTGAGGACGCCTGGTGGGGGAAAGGGGCGGTGGACGACGAGAA
GAAGAAGACGAAGATGGGAGACGGTGTCGGGGACAGCAACGCCGAGGAGA
GG
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