mRNA_E-fasciculatus_F_contig13346.2509.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13346.2509.1
Unique NamemRNA_E-fasciculatus_F_contig13346.2509.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13346.2509.1 vs. uniprot
Match: D7G1T9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T9_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 8.130e-12
Identity = 54/121 (44.63%), Postives = 54/121 (44.63%), Query Frame = -2 
Query:    3 MSRIPSSGRRQSTMLPSSSGRGSRFQGLSGAAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPLLLHRAKWQQQNRGSL 365
            MSR  SSGRRQSTMLPSS GRGSRFQGLSGAAAVA                               SPASV                                QPLLLHRAKWQQQNR SL
Sbjct:  282 MSRNASSGRRQSTMLPSSGGRGSRFQGLSGAAAVAARRKSSMSVTAAGDGASAMGKSCGIDENAD-SPASVSSGRSSSDAAASPERSTPSAKGDSKQQSYKKKQPLLLHRAKWQQQNRASL 401
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BLAST of mRNA_E-fasciculatus_F_contig13346.2509.1 vs. uniprot
Match: A0A6H5KNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU8_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 7.250e-11
Identity = 52/121 (42.98%), Postives = 53/121 (43.80%), Query Frame = -2 
Query:    3 MSRIPSSGRRQSTMLPSSSGRGSRFQGLSGAAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPLLLHRAKWQQQNRGSL 365
            MSR  SSGRRQSTMLPSS GRGSRFQGLSGAAAVA                                PASV                                QPLLLHRAKWQQQNR S+
Sbjct:  432 MSRNASSGRRQSTMLPSSGGRGSRFQGLSGAAAVAARRSSNMSVMAAGDGASAMGNSCGIDENADF-PASVPSGRSSSDAAASPERSTPSAKGDGRQQSYKKKQPLLLHRAKWQQQNRASM 551
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13346.2509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1T9_ECTSI8.130e-1244.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNU8_9PHAE7.250e-1142.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13346contigE-fasciculatus_F_contig13346:96..461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927836.070002-CDS-E-fasciculatus_F_contig13346:95..4611622927836.070002-CDS-E-fasciculatus_F_contig13346:95..461Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13346 96..461 +
1695995716.0292299-CDS-E-fasciculatus_F_contig13346:95..4611695995716.0292299-CDS-E-fasciculatus_F_contig13346:95..461Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13346 96..461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13346.2509.1prot_E-fasciculatus_F_contig13346.2509.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13346 96..461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13346.2509.1

>prot_E-fasciculatus_F_contig13346.2509.1 ID=prot_E-fasciculatus_F_contig13346.2509.1|Name=mRNA_E-fasciculatus_F_contig13346.2509.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=122bp
DRLPRFCCCHLARWSSNGCFFLYNCCCLPPFAEGVERSGDAAASQDDLPE
ETDAGESTFSSLLLLPPPPLSFATSPAAVTDMLLLLAATAAAPDRPWNLE
PRPLLDGSMVDWRRPEEGILDM
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mRNA from alignment at E-fasciculatus_F_contig13346:96..461+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13346.2509.1 ID=mRNA_E-fasciculatus_F_contig13346.2509.1|Name=mRNA_E-fasciculatus_F_contig13346.2509.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=366bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13346:96..461+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACAGGCTGCCACGATTCTGTTGCTGCCACTTGGCGCGATGGAGCAGCAA
CGGCTGCTTCTTCTTGTACAACTGCTGCTGCTTGCCGCCCTTTGCGGAAG
GGGTTGAGCGCTCCGGAGACGCCGCCGCGTCGCAGGACGACCTGCCGGAG
GAAACGGACGCCGGAGAATCGACGTTCTCGTCGTTGTTGTTGCTGCCGCC
GCCGCCCTTATCGTTTGCGACGTCACCCGCGGCCGTCACGGACATGCTGC
TCCTCCTTGCCGCCACCGCAGCCGCGCCAGACAGGCCCTGGAACCTGGAG
CCGCGGCCACTGCTGGATGGCAGCATGGTGGACTGGCGGCGTCCAGAGGA
GGGGATTCTCGACATG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13346:96..461+

>mRNA_E-fasciculatus_F_contig13346.2509.1 ID=mRNA_E-fasciculatus_F_contig13346.2509.1|Name=mRNA_E-fasciculatus_F_contig13346.2509.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=732bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13346:96..461+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACAGGCTGCCACGATTCTGTTGCTGCCACTTGGCGCGATGGAGCAGCAA
CGGCTGCTTCTTCTTGTACAACTGCTGCTGCTTGCCGCCCTTTGCGGAAG
GGGTTGAGCGCTCCGGAGACGCCGCCGCGTCGCAGGACGACCTGCCGGAG
GAAACGGACGCCGGAGAATCGACGTTCTCGTCGTTGTTGTTGCTGCCGCC
GCCGCCCTTATCGTTTGCGACGTCACCCGCGGCCGTCACGGACATGCTGC
TCCTCCTTGCCGCCACCGCAGCCGCGCCAGACAGGCCCTGGAACCTGGAG
CCGCGGCCACTGCTGGATGGCAGCATGGTGGACTGGCGGCGTCCAGAGGA
GGGGATTCTCGACATGGACAGGCTGCCACGATTCTGTTGCTGCCACTTGG
CGCGATGGAGCAGCAACGGCTGCTTCTTCTTGTACAACTGCTGCTGCTTG
CCGCCCTTTGCGGAAGGGGTTGAGCGCTCCGGAGACGCCGCCGCGTCGCA
GGACGACCTGCCGGAGGAAACGGACGCCGGAGAATCGACGTTCTCGTCGT
TGTTGTTGCTGCCGCCGCCGCCCTTATCGTTTGCGACGTCACCCGCGGCC
GTCACGGACATGCTGCTCCTCCTTGCCGCCACCGCAGCCGCGCCAGACAG
GCCCTGGAACCTGGAGCCGCGGCCACTGCTGGATGGCAGCATGGTGGACT
GGCGGCGTCCAGAGGAGGGGATTCTCGACATG
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