mRNA_E-fasciculatus_F_contig1334.2505.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1334.2505.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI) HSP 1 Score: 186 bits (472), Expect = 1.320e-49 Identity = 104/159 (65.41%), Postives = 116/159 (72.96%), Query Frame = 1
Query: 166 GSAVVSGDAIKLAELVLVRSGF*PERALSILRGCVSLMEKEVEFSAMASPPVPSAQITPGRNRNSCLNALIVALDETCDGKSWYTSTKELQLASMEFCMACRNYQTMHLIVDTAIPRRLLATADAPPPHPKPLSMPDAGATAKSAPGDVKHADRSGIEE 642
GSAV SG A KLAELVLV S PERALSI R CVSL+EKE SA S P+ PG R+SCLNA++VAL ETCDGKSWYTSTKELQLAS+ FC ACRN+QT+HL VD IPRRLLA ADAPPP + ++ D A SA DV+HAD SGIEE
Sbjct: 71 GSAVASGAATKLAELVLVWSVSKPERALSIARTCVSLLEKEDAHSASGSSPLXXXSTAPGPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPASE-AAVSDTRAPTHSASCDVEHADSSGIEE 228
BLAST of mRNA_E-fasciculatus_F_contig1334.2505.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 192 bits (487), Expect = 4.380e-49 Identity = 99/153 (64.71%), Postives = 113/153 (73.86%), Query Frame = 1
Query: 106 DTSSLRKEDAGSGFLRPDEWGSAVVSGDAIKLAELVLVRSGF*PERALSILRGCVSLMEKEVEFSAMASPPVPSAQITPGRNRNSCLNALIVALDETCDGKSWYTSTKELQLASMEFCMACRNYQTMHLIVDTAIPRRLLATADAPPPHPKPL 564
DT ++ + D GSG PD+WG AV +GDA KLAELVLV SG PE ALS+LR CV L+E+E FS S P+ S T G R+SCL L VAL+ETCDGKSWYTSTKELQLAS+E CMACR+YQT+HL VD PRRLLA ADAP PHPK L
Sbjct: 51 DTYTVMEGDVGSGSASPDKWGLAVATGDATKLAELVLVWSGSRPEAALSLLRECVLLLEEEAAFSVPDSSPLQSPSCTLGPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRL 203
BLAST of mRNA_E-fasciculatus_F_contig1334.2505.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 174 bits (441), Expect = 2.590e-44 Identity = 87/123 (70.73%), Postives = 102/123 (82.93%), Query Frame = 1
Query: 190 AIKLAELVLVRSGF*PERALSILRGCVSLMEKEVEFSAMASPPVPSAQITPGRNRNSCLNALIVALDETCDGKSWYTSTKELQLASMEFCMACRNYQTMHLIVDTAIPRRLLATADAPPPHPK 558
A +LA+LVLV SG PE ALSIL+ CVSL+EKE FSA A P VP PG +R+SCLNAL++AL+ETC+G+SWYTSTKELQLAS+EFC+ACRNYQT+HL VD IPRRLLA ADAPPPHP+
Sbjct: 56 ATRLAQLVLVWSGSEPEPALSILKDCVSLLEKEFAFSAPAFPAVPLLPTMPGPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPE 178
BLAST of mRNA_E-fasciculatus_F_contig1334.2505.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 121 bits (304), Expect = 7.880e-26 Identity = 62/104 (59.62%), Postives = 75/104 (72.12%), Query Frame = 3
Query: 1086 CEEHGDNTVTVCAAFNQGIGNSVWPASLRRLALRVAFRQSLQGLGTWMPNLEALRLLDYDSDGAGSNAGLLRGIEWPRGLRHLTVLKGSSLDGVTVPSVVQVDF 1397
C+E N + + A F+Q IG+SV PA LRRL L FRQSLQGLGTWMPNLE L LL Y G G ++ LR IEWP+GLRHLT+L+G+S+DGV +P VQV F
Sbjct: 318 CDEFAGNGMVIFANFDQPIGSSVGPALLRRLVLGHMFRQSLQGLGTWMPNLEVLHLLHYHGSGLG-DSNFLREIEWPKGLRHLTLLEGTSIDGVDIPLAVQVLF 420
BLAST of mRNA_E-fasciculatus_F_contig1334.2505.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 114 bits (286), Expect = 2.500e-25 Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = 1
Query: 343 GRNRNSCLNALIVALDETCDGKSWYTSTKELQLASMEFCMACRNYQTMHLIVDTAIPRRLLATADAPPPHPKPL 564
G N CL++LIVAL+ETCDG SWYTSTKELQ AS+EFC+ACRNY MHL VD IPR LLA ADAPPPHPK L
Sbjct: 8 GLTHNPCLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRL 81
BLAST of mRNA_E-fasciculatus_F_contig1334.2505.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 115 bits (288), Expect = 2.840e-24 Identity = 56/74 (75.68%), Postives = 64/74 (86.49%), Query Frame = 1
Query: 343 GRNRNSCLNALIVALDETCDGKSWYTSTKELQLASMEFCMACRNYQTMHLIVDTAIPRRLLATADAPPPHPKPL 564
G R+SCLNA+IVAL+ET DGKSWYTSTKE QLAS+EFC+ACRN+QT+ L VD+ PRRLLA ADAPPPHPK L
Sbjct: 6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRL 79
BLAST of mRNA_E-fasciculatus_F_contig1334.2505.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 119 bits (297), Expect = 4.540e-24 Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 1
Query: 337 TPGRNRNSCLNALIVALDETCDGKSWYTSTKELQLASMEFCMACRNYQTMHLIVDTAIPRRLLATADAPPPHPKPLS 567
+PG N+CLNA+ VAL ET DGKSWYTSTKELQLAS+EFCMACR YQT+HLIVD IPR LLA AD PP HPK LS
Sbjct: 28 SPGPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLS 104
BLAST of mRNA_E-fasciculatus_F_contig1334.2505.1 vs. uniprot
Match: D8LCG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG0_ECTSI) HSP 1 Score: 105 bits (262), Expect = 1.910e-23 Identity = 56/88 (63.64%), Postives = 64/88 (72.73%), Query Frame = 3
Query: 1128 FNQGIGNSVWPASLRRLALRVAFRQSLQGLGTWMPNLEALRLLDYDSDGAGSNAGLLRGIEWPRGLRHLTVLKGSSLDGVTVPSVVQV 1391
FNQ IG S WP SLRRL L FRQSLQGLGTWMPNLE+LRLL++ D N LLR IEWP+GL LTV K SSL+ V +P+ V+V
Sbjct: 7 FNQRIGRSAWPPSLRRLTLGHKFRQSLQGLGTWMPNLESLRLLEWYVD--LQNDSLLRRIEWPKGLLQLTVFKESSLEDVGIPAPVEV 92
BLAST of mRNA_E-fasciculatus_F_contig1334.2505.1 vs. uniprot
Match: D7FTA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA7_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 6.250e-18 Identity = 51/103 (49.51%), Postives = 61/103 (59.22%), Query Frame = 3
Query: 270 LFNGEGG*VFSYGFSTRSFSSDYARTQSQLVLERPHRCFGRDVRREELVHVDQGATASVHGVLHGV*KLPDDALDS*HSNPTKAAGHCRCATPAPEAPIYAGR 578
L GEGG VFS F SF+ T +QLVLE PH C R VRREELVH++ A A + G LHGV D ALDS ++ T+AA C C P PEA ++ R
Sbjct: 3 LIVGEGGCVFSSRFFFPSFALLCPWTHAQLVLEGPHGCLERGVRREELVHINHRAAAGILGALHGVKTPSDVALDSRRTHATQAARCCGCPLPGPEATVWDTR 105
BLAST of mRNA_E-fasciculatus_F_contig1334.2505.1 vs. uniprot
Match: D7FTA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA8_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 1.490e-17 Identity = 48/76 (63.16%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 130 DAGSGFLRPDEWGSAVVSGDAIKLAELVLVRSGF*PERALSILRGCVSLMEKEVEFSAMASPPVPSAQITPGRNRN 357
DAGSG RPD WGSAV SGDA LAELVL+ G P ALSILR CV+++EKEV SA S P+PS Q + GRN N
Sbjct: 4 DAGSGSARPDAWGSAVASGDATGLAELVLLWCGVLPHPALSILRRCVAVLEKEVALSAPTSSPLPSPQTSRGRNFN 79 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1334.2505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1334.2505.1 >prot_E-fasciculatus_F_contig1334.2505.1 ID=prot_E-fasciculatus_F_contig1334.2505.1|Name=mRNA_E-fasciculatus_F_contig1334.2505.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=140bp MEKEVEFSAMASPPVPSAQITPGRNRNSCLNALIVALDETCDGKSWYTSTback to top mRNA from alignment at E-fasciculatus_F_contig1334:857..6527+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1334.2505.1 ID=mRNA_E-fasciculatus_F_contig1334.2505.1|Name=mRNA_E-fasciculatus_F_contig1334.2505.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5671bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1334:857..6527+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1334:857..6527+ >mRNA_E-fasciculatus_F_contig1334.2505.1 ID=mRNA_E-fasciculatus_F_contig1334.2505.1|Name=mRNA_E-fasciculatus_F_contig1334.2505.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1334:857..6527+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |