mRNA_E-fasciculatus_F_contig1332.2495.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1332.2495.1
Unique NamemRNA_E-fasciculatus_F_contig1332.2495.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1332.2495.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 4.420e-46
Identity = 88/131 (67.18%), Postives = 90/131 (68.70%), Query Frame = 1 
Query:    1 WTPAFASLDDPFGFLHKLVHASDLTVCLDRYCAPDPSRRRQVQAFEV-----------------------------------PILNRASFEVQLLACVWLVAPGPPESSLAAWEDQQTQQGERQEEFDIGA 288
            WTPAFASLDDPFGFLHKLVHASDLTVCLDRYCAPD SRRRQVQAFEV                                   PILNRASFEV LLACVWLVAPGPPESS AAWEDQQTQQGER E+ + GA
Sbjct:  219 WTPAFASLDDPFGFLHKLVHASDLTVCLDRYCAPDSSRRRQVQAFEVLRPASAPFRLGRGCSSVQLPRMNCYVVVGFYVKKVPILNRASFEVHLLACVWLVAPGPPESSFAAWEDQQTQQGERLEDTEFGA 349
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1332.2495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKG1_9PHAE4.420e-4667.18VPS13_C domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1332contigE-fasciculatus_F_contig1332:11871..12548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.7
Seed ortholog evalue3.3e-46
Seed eggNOG ortholog2880.D8LBD2
Preferred nameVPS13B
KEGG koko:K19526
GOsGO:0005575,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0019898,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0044425,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927834.530683-CDS-E-fasciculatus_F_contig1332:11870..120081622927834.530683-CDS-E-fasciculatus_F_contig1332:11870..12008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1332 11871..12008 +
1695995715.2542956-CDS-E-fasciculatus_F_contig1332:11870..120081695995715.2542956-CDS-E-fasciculatus_F_contig1332:11870..12008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1332 11871..12008 +
1622927834.5465777-CDS-E-fasciculatus_F_contig1332:12393..125461622927834.5465777-CDS-E-fasciculatus_F_contig1332:12393..12546Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1332 12394..12546 +
1695995715.2655923-CDS-E-fasciculatus_F_contig1332:12393..125461695995715.2655923-CDS-E-fasciculatus_F_contig1332:12393..12546Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1332 12394..12546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1332.2495.1prot_E-fasciculatus_F_contig1332.2495.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1332 11871..12546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1332.2495.1

>prot_E-fasciculatus_F_contig1332.2495.1 ID=prot_E-fasciculatus_F_contig1332.2495.1|Name=mRNA_E-fasciculatus_F_contig1332.2495.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=97bp
WTPAFASLDDPFGFLHKLVHASDLTVCLDRYCAPDPSRRRQVQAFEVPIL
NRASFEVQLLACVWLVAPGPPESSLAAWEDQQTQQGERQEEFDIGAA
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mRNA from alignment at E-fasciculatus_F_contig1332:11871..12548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1332.2495.1 ID=mRNA_E-fasciculatus_F_contig1332.2495.1|Name=mRNA_E-fasciculatus_F_contig1332.2495.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=678bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1332:11871..12548+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGACGCCGGCGTTCGCCAGCCTCGATGACCCTTTCGGCTTCTTGCATAA
GCTTGTGCACGCCAGCGACTTGACCGTGTGTCTCGACCGCTACTGCGCTC
CAGACCCCTCGAGGAGAAGACAAGTCCAGGCCTTCGAGGTGCTCCGGCCG
GCTACAGCGCCGTTTAGTCTTGGTCGTGGCTGCAGTGGCGTACAAGTACC
TCGTAATGAATTGATGTTTTTGTTTTTTGCGTACGTGGAAAGGTGAAGCG
ATGGTGAGGCTTCAGCAGCCAAGCATGCCATCGGCATAACGGTCGATGCC
TCGCGCACAGATAGTGCTTCTCATGCTTATAGGATACGTTTTGCTCTTGG
CTCCTTTCCATCTTGTCGATCTTCTCGGACACCGAAATTGCTGTTCGTGC
CTCAAGTCTAAACAGCATCCTAGAAGTCCCCCCCCCGCGACACGTCGTAC
CTTGCGGGACCGCACGTGTTGTCTCTCTAAGCTGGCTCTTTTTTCTGCCT
GCGTGGCATTTTTTTCCCTGCAGGTACCCATCCTCAACCGCGCGTCCTTC
GAGGTCCAACTTCTAGCCTGCGTGTGGCTAGTCGCGCCGGGCCCGCCGGA
GTCCTCCTTAGCGGCGTGGGAAGACCAGCAAACGCAGCAAGGGGAAAGGC
AGGAGGAATTTGACATTGGCGCTGCGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1332:11871..12548+

>mRNA_E-fasciculatus_F_contig1332.2495.1 ID=mRNA_E-fasciculatus_F_contig1332.2495.1|Name=mRNA_E-fasciculatus_F_contig1332.2495.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1332:11871..12548+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGACGCCGGCGTTCGCCAGCCTCGATGACCCTTTCGGCTTCTTGCATAA
GCTTGTGCACGCCAGCGACTTGACCGTGTGTCTCGACCGCTACTGCGCTC
CAGACCCCTCGAGGAGAAGACAAGTCCAGGCCTTCGAGTGGACGCCGGCG
TTCGCCAGCCTCGATGACCCTTTCGGCTTCTTGCATAAGCTTGTGCACGC
CAGCGACTTGACCGTGTGTCTCGACCGCTACTGCGCTCCAGACCCCTCGA
GGAGAAGACAAGTCCAGGCCTTCGAGGTACCCATCCTCAACCGCGCGTCC
TTCGAGGTCCAACTTCTAGCCTGCGTGTGGCTAGTCGCGCCGGGCCCGCC
GGAGTCCTCCTTAGCGGCGTGGGAAGACCAGCAAACGCAGCAAGGGGAAA
GGCAGGAGGAATTTGACATTGGCGCTGCGGTACCCATCCTCAACCGCGCG
TCCTTCGAGGTCCAACTTCTAGCCTGCGTGTGGCTAGTCGCGCCGGGCCC
GCCGGAGTCCTCCTTAGCGGCGTGGGAAGACCAGCAAACGCAGCAAGGGG
AAAGGCAGGAGGAATTTGACATTGGCGCTGCG
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